data_wwPDB_remediated_restraints_file_for_PDB_entry_2gvp # This wwPDB archive file contains, for PDB entry 2gvp: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_2gvp _Entry.Title "wwPDB remediated NMR restraints for PDB entry 2gvp" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 2gvp" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_2gvp _Assembly.ID 1 _Assembly.Name 2gvp _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 19680.1886 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "SCO1 protein homolog mitochondrial" 1 $SCO1_protein_homolog__mitochondrial A . no . . . . . . rr_2gvp 1 stop_ save_ save_SCO1_protein_homolog__mitochondrial _Entity.Sf_category entity _Entity.Sf_framecode SCO1_protein_homolog__mitochondrial _Entity.Entry_ID rr_2gvp _Entity.ID 1 _Entity.Name SCO1_protein_homolog__mitochondrial _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; SFTGKPLLGGPFSLTTHTGE RKTDKDYLGQWLLIYFGFTH CPDVCPEELEKMIQVVDEID SITTLPDLTPLFISIDPERD TKEAIANYVKEFSPKLVGLT GTREEVDQVARAYRVYYSPG PKDEDEDYIVDHTIIMYLIG PDGEFLDYFGQNKRKGEIAA SIATHMRPYRKKS ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 173 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 19680.1886 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . SER . rr_2gvp 1 2 . PHE . rr_2gvp 1 3 . THR . rr_2gvp 1 4 . GLY . rr_2gvp 1 5 . LYS . rr_2gvp 1 6 . PRO . rr_2gvp 1 7 . LEU . rr_2gvp 1 8 . LEU . rr_2gvp 1 9 . GLY . rr_2gvp 1 10 . GLY . rr_2gvp 1 11 . PRO . rr_2gvp 1 12 . PHE . rr_2gvp 1 13 . SER . rr_2gvp 1 14 . LEU . rr_2gvp 1 15 . THR . rr_2gvp 1 16 . THR . rr_2gvp 1 17 . HIS . rr_2gvp 1 18 . THR . rr_2gvp 1 19 . GLY . rr_2gvp 1 20 . GLU . rr_2gvp 1 21 . ARG . rr_2gvp 1 22 . LYS . rr_2gvp 1 23 . THR . rr_2gvp 1 24 . ASP . rr_2gvp 1 25 . LYS . rr_2gvp 1 26 . ASP . rr_2gvp 1 27 . TYR . rr_2gvp 1 28 . LEU . rr_2gvp 1 29 . GLY . rr_2gvp 1 30 . GLN . rr_2gvp 1 31 . TRP . rr_2gvp 1 32 . LEU . rr_2gvp 1 33 . LEU . rr_2gvp 1 34 . ILE . rr_2gvp 1 35 . TYR . rr_2gvp 1 36 . PHE . rr_2gvp 1 37 . GLY . rr_2gvp 1 38 . PHE . rr_2gvp 1 39 . THR . rr_2gvp 1 40 . HIS . rr_2gvp 1 41 . CYS . rr_2gvp 1 42 . PRO . rr_2gvp 1 43 . ASP . rr_2gvp 1 44 . VAL . rr_2gvp 1 45 . CYS . rr_2gvp 1 46 . PRO . rr_2gvp 1 47 . GLU . rr_2gvp 1 48 . GLU . rr_2gvp 1 49 . LEU . rr_2gvp 1 50 . GLU . rr_2gvp 1 51 . LYS . rr_2gvp 1 52 . MET . rr_2gvp 1 53 . ILE . rr_2gvp 1 54 . GLN . rr_2gvp 1 55 . VAL . rr_2gvp 1 56 . VAL . rr_2gvp 1 57 . ASP . rr_2gvp 1 58 . GLU . rr_2gvp 1 59 . ILE . rr_2gvp 1 60 . ASP . rr_2gvp 1 61 . SER . rr_2gvp 1 62 . ILE . rr_2gvp 1 63 . THR . rr_2gvp 1 64 . THR . rr_2gvp 1 65 . LEU . rr_2gvp 1 66 . PRO . rr_2gvp 1 67 . ASP . rr_2gvp 1 68 . LEU . rr_2gvp 1 69 . THR . rr_2gvp 1 70 . PRO . rr_2gvp 1 71 . LEU . rr_2gvp 1 72 . PHE . rr_2gvp 1 73 . ILE . rr_2gvp 1 74 . SER . rr_2gvp 1 75 . ILE . rr_2gvp 1 76 . ASP . rr_2gvp 1 77 . PRO . rr_2gvp 1 78 . GLU . rr_2gvp 1 79 . ARG . rr_2gvp 1 80 . ASP . rr_2gvp 1 81 . THR . rr_2gvp 1 82 . LYS . rr_2gvp 1 83 . GLU . rr_2gvp 1 84 . ALA . rr_2gvp 1 85 . ILE . rr_2gvp 1 86 . ALA . rr_2gvp 1 87 . ASN . rr_2gvp 1 88 . TYR . rr_2gvp 1 89 . VAL . rr_2gvp 1 90 . LYS . rr_2gvp 1 91 . GLU . rr_2gvp 1 92 . PHE . rr_2gvp 1 93 . SER . rr_2gvp 1 94 . PRO . rr_2gvp 1 95 . LYS . rr_2gvp 1 96 . LEU . rr_2gvp 1 97 . VAL . rr_2gvp 1 98 . GLY . rr_2gvp 1 99 . LEU . rr_2gvp 1 100 . THR . rr_2gvp 1 101 . GLY . rr_2gvp 1 102 . THR . rr_2gvp 1 103 . ARG . rr_2gvp 1 104 . GLU . rr_2gvp 1 105 . GLU . rr_2gvp 1 106 . VAL . rr_2gvp 1 107 . ASP . rr_2gvp 1 108 . GLN . rr_2gvp 1 109 . VAL . rr_2gvp 1 110 . ALA . rr_2gvp 1 111 . ARG . rr_2gvp 1 112 . ALA . rr_2gvp 1 113 . TYR . rr_2gvp 1 114 . ARG . rr_2gvp 1 115 . VAL . rr_2gvp 1 116 . TYR . rr_2gvp 1 117 . TYR . rr_2gvp 1 118 . SER . rr_2gvp 1 119 . PRO . rr_2gvp 1 120 . GLY . rr_2gvp 1 121 . PRO . rr_2gvp 1 122 . LYS . rr_2gvp 1 123 . ASP . rr_2gvp 1 124 . GLU . rr_2gvp 1 125 . ASP . rr_2gvp 1 126 . GLU . rr_2gvp 1 127 . ASP . rr_2gvp 1 128 . TYR . rr_2gvp 1 129 . ILE . rr_2gvp 1 130 . VAL . rr_2gvp 1 131 . ASP . rr_2gvp 1 132 . HIS . rr_2gvp 1 133 . THR . rr_2gvp 1 134 . ILE . rr_2gvp 1 135 . ILE . rr_2gvp 1 136 . MET . rr_2gvp 1 137 . TYR . rr_2gvp 1 138 . LEU . rr_2gvp 1 139 . ILE . rr_2gvp 1 140 . GLY . rr_2gvp 1 141 . PRO . rr_2gvp 1 142 . ASP . rr_2gvp 1 143 . GLY . rr_2gvp 1 144 . GLU . rr_2gvp 1 145 . PHE . rr_2gvp 1 146 . LEU . rr_2gvp 1 147 . ASP . rr_2gvp 1 148 . TYR . rr_2gvp 1 149 . PHE . rr_2gvp 1 150 . GLY . rr_2gvp 1 151 . GLN . rr_2gvp 1 152 . ASN . rr_2gvp 1 153 . LYS . rr_2gvp 1 154 . ARG . rr_2gvp 1 155 . LYS . rr_2gvp 1 156 . GLY . rr_2gvp 1 157 . GLU . rr_2gvp 1 158 . ILE . rr_2gvp 1 159 . ALA . rr_2gvp 1 160 . ALA . rr_2gvp 1 161 . SER . rr_2gvp 1 162 . ILE . rr_2gvp 1 163 . ALA . rr_2gvp 1 164 . THR . rr_2gvp 1 165 . HIS . rr_2gvp 1 166 . MET . rr_2gvp 1 167 . ARG . rr_2gvp 1 168 . PRO . rr_2gvp 1 169 . TYR . rr_2gvp 1 170 . ARG . rr_2gvp 1 171 . LYS . rr_2gvp 1 172 . LYS . rr_2gvp 1 173 . SER . rr_2gvp 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . SER 1 1 rr_2gvp 1 . PHE 2 2 rr_2gvp 1 . THR 3 3 rr_2gvp 1 . GLY 4 4 rr_2gvp 1 . LYS 5 5 rr_2gvp 1 . PRO 6 6 rr_2gvp 1 . LEU 7 7 rr_2gvp 1 . LEU 8 8 rr_2gvp 1 . GLY 9 9 rr_2gvp 1 . GLY 10 10 rr_2gvp 1 . PRO 11 11 rr_2gvp 1 . PHE 12 12 rr_2gvp 1 . SER 13 13 rr_2gvp 1 . LEU 14 14 rr_2gvp 1 . THR 15 15 rr_2gvp 1 . THR 16 16 rr_2gvp 1 . HIS 17 17 rr_2gvp 1 . THR 18 18 rr_2gvp 1 . GLY 19 19 rr_2gvp 1 . GLU 20 20 rr_2gvp 1 . ARG 21 21 rr_2gvp 1 . LYS 22 22 rr_2gvp 1 . THR 23 23 rr_2gvp 1 . ASP 24 24 rr_2gvp 1 . LYS 25 25 rr_2gvp 1 . ASP 26 26 rr_2gvp 1 . TYR 27 27 rr_2gvp 1 . LEU 28 28 rr_2gvp 1 . GLY 29 29 rr_2gvp 1 . GLN 30 30 rr_2gvp 1 . TRP 31 31 rr_2gvp 1 . LEU 32 32 rr_2gvp 1 . LEU 33 33 rr_2gvp 1 . ILE 34 34 rr_2gvp 1 . TYR 35 35 rr_2gvp 1 . PHE 36 36 rr_2gvp 1 . GLY 37 37 rr_2gvp 1 . PHE 38 38 rr_2gvp 1 . THR 39 39 rr_2gvp 1 . HIS 40 40 rr_2gvp 1 . CYS 41 41 rr_2gvp 1 . PRO 42 42 rr_2gvp 1 . ASP 43 43 rr_2gvp 1 . VAL 44 44 rr_2gvp 1 . CYS 45 45 rr_2gvp 1 . PRO 46 46 rr_2gvp 1 . GLU 47 47 rr_2gvp 1 . GLU 48 48 rr_2gvp 1 . LEU 49 49 rr_2gvp 1 . GLU 50 50 rr_2gvp 1 . LYS 51 51 rr_2gvp 1 . MET 52 52 rr_2gvp 1 . ILE 53 53 rr_2gvp 1 . GLN 54 54 rr_2gvp 1 . VAL 55 55 rr_2gvp 1 . VAL 56 56 rr_2gvp 1 . ASP 57 57 rr_2gvp 1 . GLU 58 58 rr_2gvp 1 . ILE 59 59 rr_2gvp 1 . ASP 60 60 rr_2gvp 1 . SER 61 61 rr_2gvp 1 . ILE 62 62 rr_2gvp 1 . THR 63 63 rr_2gvp 1 . THR 64 64 rr_2gvp 1 . LEU 65 65 rr_2gvp 1 . PRO 66 66 rr_2gvp 1 . ASP 67 67 rr_2gvp 1 . LEU 68 68 rr_2gvp 1 . THR 69 69 rr_2gvp 1 . PRO 70 70 rr_2gvp 1 . LEU 71 71 rr_2gvp 1 . PHE 72 72 rr_2gvp 1 . ILE 73 73 rr_2gvp 1 . SER 74 74 rr_2gvp 1 . ILE 75 75 rr_2gvp 1 . ASP 76 76 rr_2gvp 1 . PRO 77 77 rr_2gvp 1 . GLU 78 78 rr_2gvp 1 . ARG 79 79 rr_2gvp 1 . ASP 80 80 rr_2gvp 1 . THR 81 81 rr_2gvp 1 . LYS 82 82 rr_2gvp 1 . GLU 83 83 rr_2gvp 1 . ALA 84 84 rr_2gvp 1 . ILE 85 85 rr_2gvp 1 . ALA 86 86 rr_2gvp 1 . ASN 87 87 rr_2gvp 1 . TYR 88 88 rr_2gvp 1 . VAL 89 89 rr_2gvp 1 . LYS 90 90 rr_2gvp 1 . GLU 91 91 rr_2gvp 1 . PHE 92 92 rr_2gvp 1 . SER 93 93 rr_2gvp 1 . PRO 94 94 rr_2gvp 1 . LYS 95 95 rr_2gvp 1 . LEU 96 96 rr_2gvp 1 . VAL 97 97 rr_2gvp 1 . GLY 98 98 rr_2gvp 1 . LEU 99 99 rr_2gvp 1 . THR 100 100 rr_2gvp 1 . GLY 101 101 rr_2gvp 1 . THR 102 102 rr_2gvp 1 . ARG 103 103 rr_2gvp 1 . GLU 104 104 rr_2gvp 1 . GLU 105 105 rr_2gvp 1 . VAL 106 106 rr_2gvp 1 . ASP 107 107 rr_2gvp 1 . GLN 108 108 rr_2gvp 1 . VAL 109 109 rr_2gvp 1 . ALA 110 110 rr_2gvp 1 . ARG 111 111 rr_2gvp 1 . ALA 112 112 rr_2gvp 1 . TYR 113 113 rr_2gvp 1 . ARG 114 114 rr_2gvp 1 . VAL 115 115 rr_2gvp 1 . TYR 116 116 rr_2gvp 1 . TYR 117 117 rr_2gvp 1 . SER 118 118 rr_2gvp 1 . PRO 119 119 rr_2gvp 1 . GLY 120 120 rr_2gvp 1 . PRO 121 121 rr_2gvp 1 . LYS 122 122 rr_2gvp 1 . ASP 123 123 rr_2gvp 1 . GLU 124 124 rr_2gvp 1 . ASP 125 125 rr_2gvp 1 . GLU 126 126 rr_2gvp 1 . ASP 127 127 rr_2gvp 1 . TYR 128 128 rr_2gvp 1 . ILE 129 129 rr_2gvp 1 . VAL 130 130 rr_2gvp 1 . ASP 131 131 rr_2gvp 1 . HIS 132 132 rr_2gvp 1 . THR 133 133 rr_2gvp 1 . ILE 134 134 rr_2gvp 1 . ILE 135 135 rr_2gvp 1 . MET 136 136 rr_2gvp 1 . TYR 137 137 rr_2gvp 1 . LEU 138 138 rr_2gvp 1 . ILE 139 139 rr_2gvp 1 . GLY 140 140 rr_2gvp 1 . PRO 141 141 rr_2gvp 1 . ASP 142 142 rr_2gvp 1 . GLY 143 143 rr_2gvp 1 . GLU 144 144 rr_2gvp 1 . PHE 145 145 rr_2gvp 1 . LEU 146 146 rr_2gvp 1 . ASP 147 147 rr_2gvp 1 . TYR 148 148 rr_2gvp 1 . PHE 149 149 rr_2gvp 1 . GLY 150 150 rr_2gvp 1 . GLN 151 151 rr_2gvp 1 . ASN 152 152 rr_2gvp 1 . LYS 153 153 rr_2gvp 1 . ARG 154 154 rr_2gvp 1 . LYS 155 155 rr_2gvp 1 . GLY 156 156 rr_2gvp 1 . GLU 157 157 rr_2gvp 1 . ILE 158 158 rr_2gvp 1 . ALA 159 159 rr_2gvp 1 . ALA 160 160 rr_2gvp 1 . SER 161 161 rr_2gvp 1 . ILE 162 162 rr_2gvp 1 . ALA 163 163 rr_2gvp 1 . THR 164 164 rr_2gvp 1 . HIS 165 165 rr_2gvp 1 . MET 166 166 rr_2gvp 1 . ARG 167 167 rr_2gvp 1 . PRO 168 168 rr_2gvp 1 . TYR 169 169 rr_2gvp 1 . ARG 170 170 rr_2gvp 1 . LYS 171 171 rr_2gvp 1 . LYS 172 172 rr_2gvp 1 . SER 173 173 rr_2gvp 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_2gvp _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 1 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_2gvp _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 2gvp.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_2gvp 1 1 2gvp.mr . . AMBER 2 distance NOE simple 0 rr_2gvp 1 1 2gvp.mr . . AMBER 3 "dihedral angle" "Not applicable" "Not applicable" 0 rr_2gvp 1 1 2gvp.mr . . "MR format" 4 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_2gvp 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2gvp _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER TRANSPORT PROTEIN 03-MAY-06 2GVP *TITLE SOLUTION STRUCTURE OF HUMAN APO SCO1 *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: SCO1 PROTEIN HOMOLOG, MITOCHONDRIAL; *COMPND 3 CHAIN: A; *COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (RESIDUES 132-301); *COMPND 5 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; *SOURCE 3 ORGANISM_COMMON: HUMAN; *SOURCE 4 GENE: SCO1, SCOD1; *SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; *SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3 GOLD; *SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; *SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETG-30A *KEYWDS THIOREDOXIN-LIKE FOLD, METALLOPROTEIN, STRUCTURAL GENOMICS, *KEYWDS 2 STRUCTURAL PROTEOMICS IN EUROPE, SPINE *EXPDTA NMR, MINIMIZED AVERAGE STRUCTURE *AUTHOR L.BANCI, I.BERTINI, V.CALDERONE, S.CIOFI-BAFFONI, S.MANGANI, *AUTHOR 2 P.PAULMAA, M.MARTINELLI, S.WANG, STRUCTURAL PROTEOMICS IN *AUTHOR 3 EUROPE (SPINE) *REVDAT 1 06-JUN-06 2GVP 0 ; save_