data_wwPDB_remediated_restraints_file_for_PDB_entry_2gzy # This wwPDB archive file contains, for PDB entry 2gzy: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_2gzy _Entry.Title "wwPDB remediated NMR restraints for PDB entry 2gzy" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 2gzy" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_2gzy _Assembly.ID 1 _Assembly.Name 2gzy _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 11385.0782 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 Thioredoxin 1 $Thioredoxin A . no . . . . . . rr_2gzy 1 stop_ save_ save_Thioredoxin _Entity.Sf_category entity _Entity.Sf_framecode Thioredoxin _Entity.Entry_ID rr_2gzy _Entity.ID 1 _Entity.Name Thioredoxin _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; MAIVKATDQSFSAETSEGVV LADFWAPWCGPCKMIAPVLE ELDQEMGDKLKIVKIDVDEN QETAGKYGVMSIPTLLVLKD GEVVETSVGFKPKEALQELV NKHL ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 104 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 11385.0782 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . MET . rr_2gzy 1 2 . ALA . rr_2gzy 1 3 . ILE . rr_2gzy 1 4 . VAL . rr_2gzy 1 5 . LYS . rr_2gzy 1 6 . ALA . rr_2gzy 1 7 . THR . rr_2gzy 1 8 . ASP . rr_2gzy 1 9 . GLN . rr_2gzy 1 10 . SER . rr_2gzy 1 11 . PHE . rr_2gzy 1 12 . SER . rr_2gzy 1 13 . ALA . rr_2gzy 1 14 . GLU . rr_2gzy 1 15 . THR . rr_2gzy 1 16 . SER . rr_2gzy 1 17 . GLU . rr_2gzy 1 18 . GLY . rr_2gzy 1 19 . VAL . rr_2gzy 1 20 . VAL . rr_2gzy 1 21 . LEU . rr_2gzy 1 22 . ALA . rr_2gzy 1 23 . ASP . rr_2gzy 1 24 . PHE . rr_2gzy 1 25 . TRP . rr_2gzy 1 26 . ALA . rr_2gzy 1 27 . PRO . rr_2gzy 1 28 . TRP . rr_2gzy 1 29 . CYS . rr_2gzy 1 30 . GLY . rr_2gzy 1 31 . PRO . rr_2gzy 1 32 . CYS . rr_2gzy 1 33 . LYS . rr_2gzy 1 34 . MET . rr_2gzy 1 35 . ILE . rr_2gzy 1 36 . ALA . rr_2gzy 1 37 . PRO . rr_2gzy 1 38 . VAL . rr_2gzy 1 39 . LEU . rr_2gzy 1 40 . GLU . rr_2gzy 1 41 . GLU . rr_2gzy 1 42 . LEU . rr_2gzy 1 43 . ASP . rr_2gzy 1 44 . GLN . rr_2gzy 1 45 . GLU . rr_2gzy 1 46 . MET . rr_2gzy 1 47 . GLY . rr_2gzy 1 48 . ASP . rr_2gzy 1 49 . LYS . rr_2gzy 1 50 . LEU . rr_2gzy 1 51 . LYS . rr_2gzy 1 52 . ILE . rr_2gzy 1 53 . VAL . rr_2gzy 1 54 . LYS . rr_2gzy 1 55 . ILE . rr_2gzy 1 56 . ASP . rr_2gzy 1 57 . VAL . rr_2gzy 1 58 . ASP . rr_2gzy 1 59 . GLU . rr_2gzy 1 60 . ASN . rr_2gzy 1 61 . GLN . rr_2gzy 1 62 . GLU . rr_2gzy 1 63 . THR . rr_2gzy 1 64 . ALA . rr_2gzy 1 65 . GLY . rr_2gzy 1 66 . LYS . rr_2gzy 1 67 . TYR . rr_2gzy 1 68 . GLY . rr_2gzy 1 69 . VAL . rr_2gzy 1 70 . MET . rr_2gzy 1 71 . SER . rr_2gzy 1 72 . ILE . rr_2gzy 1 73 . PRO . rr_2gzy 1 74 . THR . rr_2gzy 1 75 . LEU . rr_2gzy 1 76 . LEU . rr_2gzy 1 77 . VAL . rr_2gzy 1 78 . LEU . rr_2gzy 1 79 . LYS . rr_2gzy 1 80 . ASP . rr_2gzy 1 81 . GLY . rr_2gzy 1 82 . GLU . rr_2gzy 1 83 . VAL . rr_2gzy 1 84 . VAL . rr_2gzy 1 85 . GLU . rr_2gzy 1 86 . THR . rr_2gzy 1 87 . SER . rr_2gzy 1 88 . VAL . rr_2gzy 1 89 . GLY . rr_2gzy 1 90 . PHE . rr_2gzy 1 91 . LYS . rr_2gzy 1 92 . PRO . rr_2gzy 1 93 . LYS . rr_2gzy 1 94 . GLU . rr_2gzy 1 95 . ALA . rr_2gzy 1 96 . LEU . rr_2gzy 1 97 . GLN . rr_2gzy 1 98 . GLU . rr_2gzy 1 99 . LEU . rr_2gzy 1 100 . VAL . rr_2gzy 1 101 . ASN . rr_2gzy 1 102 . LYS . rr_2gzy 1 103 . HIS . rr_2gzy 1 104 . LEU . rr_2gzy 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . MET 1 1 rr_2gzy 1 . ALA 2 2 rr_2gzy 1 . ILE 3 3 rr_2gzy 1 . VAL 4 4 rr_2gzy 1 . LYS 5 5 rr_2gzy 1 . ALA 6 6 rr_2gzy 1 . THR 7 7 rr_2gzy 1 . ASP 8 8 rr_2gzy 1 . GLN 9 9 rr_2gzy 1 . SER 10 10 rr_2gzy 1 . PHE 11 11 rr_2gzy 1 . SER 12 12 rr_2gzy 1 . ALA 13 13 rr_2gzy 1 . GLU 14 14 rr_2gzy 1 . THR 15 15 rr_2gzy 1 . SER 16 16 rr_2gzy 1 . GLU 17 17 rr_2gzy 1 . GLY 18 18 rr_2gzy 1 . VAL 19 19 rr_2gzy 1 . VAL 20 20 rr_2gzy 1 . LEU 21 21 rr_2gzy 1 . ALA 22 22 rr_2gzy 1 . ASP 23 23 rr_2gzy 1 . PHE 24 24 rr_2gzy 1 . TRP 25 25 rr_2gzy 1 . ALA 26 26 rr_2gzy 1 . PRO 27 27 rr_2gzy 1 . TRP 28 28 rr_2gzy 1 . CYS 29 29 rr_2gzy 1 . GLY 30 30 rr_2gzy 1 . PRO 31 31 rr_2gzy 1 . CYS 32 32 rr_2gzy 1 . LYS 33 33 rr_2gzy 1 . MET 34 34 rr_2gzy 1 . ILE 35 35 rr_2gzy 1 . ALA 36 36 rr_2gzy 1 . PRO 37 37 rr_2gzy 1 . VAL 38 38 rr_2gzy 1 . LEU 39 39 rr_2gzy 1 . GLU 40 40 rr_2gzy 1 . GLU 41 41 rr_2gzy 1 . LEU 42 42 rr_2gzy 1 . ASP 43 43 rr_2gzy 1 . GLN 44 44 rr_2gzy 1 . GLU 45 45 rr_2gzy 1 . MET 46 46 rr_2gzy 1 . GLY 47 47 rr_2gzy 1 . ASP 48 48 rr_2gzy 1 . LYS 49 49 rr_2gzy 1 . LEU 50 50 rr_2gzy 1 . LYS 51 51 rr_2gzy 1 . ILE 52 52 rr_2gzy 1 . VAL 53 53 rr_2gzy 1 . LYS 54 54 rr_2gzy 1 . ILE 55 55 rr_2gzy 1 . ASP 56 56 rr_2gzy 1 . VAL 57 57 rr_2gzy 1 . ASP 58 58 rr_2gzy 1 . GLU 59 59 rr_2gzy 1 . ASN 60 60 rr_2gzy 1 . GLN 61 61 rr_2gzy 1 . GLU 62 62 rr_2gzy 1 . THR 63 63 rr_2gzy 1 . ALA 64 64 rr_2gzy 1 . GLY 65 65 rr_2gzy 1 . LYS 66 66 rr_2gzy 1 . TYR 67 67 rr_2gzy 1 . GLY 68 68 rr_2gzy 1 . VAL 69 69 rr_2gzy 1 . MET 70 70 rr_2gzy 1 . SER 71 71 rr_2gzy 1 . ILE 72 72 rr_2gzy 1 . PRO 73 73 rr_2gzy 1 . THR 74 74 rr_2gzy 1 . LEU 75 75 rr_2gzy 1 . LEU 76 76 rr_2gzy 1 . VAL 77 77 rr_2gzy 1 . LEU 78 78 rr_2gzy 1 . LYS 79 79 rr_2gzy 1 . ASP 80 80 rr_2gzy 1 . GLY 81 81 rr_2gzy 1 . GLU 82 82 rr_2gzy 1 . VAL 83 83 rr_2gzy 1 . VAL 84 84 rr_2gzy 1 . GLU 85 85 rr_2gzy 1 . THR 86 86 rr_2gzy 1 . SER 87 87 rr_2gzy 1 . VAL 88 88 rr_2gzy 1 . GLY 89 89 rr_2gzy 1 . PHE 90 90 rr_2gzy 1 . LYS 91 91 rr_2gzy 1 . PRO 92 92 rr_2gzy 1 . LYS 93 93 rr_2gzy 1 . GLU 94 94 rr_2gzy 1 . ALA 95 95 rr_2gzy 1 . LEU 96 96 rr_2gzy 1 . GLN 97 97 rr_2gzy 1 . GLU 98 98 rr_2gzy 1 . LEU 99 99 rr_2gzy 1 . VAL 100 100 rr_2gzy 1 . ASN 101 101 rr_2gzy 1 . LYS 102 102 rr_2gzy 1 . HIS 103 103 rr_2gzy 1 . LEU 104 104 rr_2gzy 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_2gzy _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 20 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_2gzy _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 2gzy.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_2gzy 1 1 2gzy.mr . . AMBER 2 distance NOE simple 0 rr_2gzy 1 1 2gzy.mr . . AMBER 3 distance "hydrogen bond" simple 0 rr_2gzy 1 1 2gzy.mr . . AMBER 4 "dihedral angle" "Not applicable" "Not applicable" 0 rr_2gzy 1 1 2gzy.mr . . AMBER 5 stereochemistry chirality "Not applicable" 0 rr_2gzy 1 1 2gzy.mr . . AMBER 6 "dihedral angle" "Not applicable" "Not applicable" 0 rr_2gzy 1 1 2gzy.mr . . "MR format" 7 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_2gzy 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2gzy _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER ELECTRON TRANSPORT 12-MAY-06 2GZY *TITLE SOLUTION STRUCTURES OF THE REDUCED FORM OF THIOREDOXIN FROM *TITLE 2 BACILLUS SUBTILIS *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: THIOREDOXIN; *COMPND 3 CHAIN: A; *COMPND 4 SYNONYM: TRX; *COMPND 5 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; *SOURCE 3 ORGANISM_COMMON: BACTERIA; *SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 5 EXPRESSION_SYSTEM_COMMON: BACTERIA; *SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; *SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21A *KEYWDS ALPHA/BETA *EXPDTA NMR, 20 STRUCTURES *AUTHOR H.XU, X.ZHANG, J.CHEN, C.JIN *REVDAT 1 13-FEB-07 2GZY 0 ; save_