data_wwPDB_remediated_restraints_file_for_PDB_entry_2jup # This wwPDB archive file contains, for PDB entry 2jup: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_2jup _Entry.Title "wwPDB remediated NMR restraints for PDB entry 2jup" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 2jup" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_2jup _Assembly.ID 1 _Assembly.Name 2jup _Assembly.Number_of_components 2 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "not present" _Assembly.Molecular_mass 5242.7929 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "Transcription elongation regulator 1" 1 $Transcription_elongation_regulator_1 A . no . . . . . . rr_2jup 1 2 "Formin 1" 2 $Formin_1 B . no . . . . . . rr_2jup 1 stop_ save_ save_Transcription_elongation_regulator_1 _Entity.Sf_category entity _Entity.Sf_framecode Transcription_elongation_regulator_1 _Entity.Entry_ID rr_2jup _Entity.ID 1 _Entity.Name Transcription_elongation_regulator_1 _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; GATAVSEWTEYKTADGKTYY YNNRTLESTWEKPQELK ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 37 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 4358.7095 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . GLY . rr_2jup 1 2 . ALA . rr_2jup 1 3 . THR . rr_2jup 1 4 . ALA . rr_2jup 1 5 . VAL . rr_2jup 1 6 . SER . rr_2jup 1 7 . GLU . rr_2jup 1 8 . TRP . rr_2jup 1 9 . THR . rr_2jup 1 10 . GLU . rr_2jup 1 11 . TYR . rr_2jup 1 12 . LYS . rr_2jup 1 13 . THR . rr_2jup 1 14 . ALA . rr_2jup 1 15 . ASP . rr_2jup 1 16 . GLY . rr_2jup 1 17 . LYS . rr_2jup 1 18 . THR . rr_2jup 1 19 . TYR . rr_2jup 1 20 . TYR . rr_2jup 1 21 . TYR . rr_2jup 1 22 . ASN . rr_2jup 1 23 . ASN . rr_2jup 1 24 . ARG . rr_2jup 1 25 . THR . rr_2jup 1 26 . LEU . rr_2jup 1 27 . GLU . rr_2jup 1 28 . SER . rr_2jup 1 29 . THR . rr_2jup 1 30 . TRP . rr_2jup 1 31 . GLU . rr_2jup 1 32 . LYS . rr_2jup 1 33 . PRO . rr_2jup 1 34 . GLN . rr_2jup 1 35 . GLU . rr_2jup 1 36 . LEU . rr_2jup 1 37 . LYS . rr_2jup 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . GLY 1 1 rr_2jup 1 . ALA 2 2 rr_2jup 1 . THR 3 3 rr_2jup 1 . ALA 4 4 rr_2jup 1 . VAL 5 5 rr_2jup 1 . SER 6 6 rr_2jup 1 . GLU 7 7 rr_2jup 1 . TRP 8 8 rr_2jup 1 . THR 9 9 rr_2jup 1 . GLU 10 10 rr_2jup 1 . TYR 11 11 rr_2jup 1 . LYS 12 12 rr_2jup 1 . THR 13 13 rr_2jup 1 . ALA 14 14 rr_2jup 1 . ASP 15 15 rr_2jup 1 . GLY 16 16 rr_2jup 1 . LYS 17 17 rr_2jup 1 . THR 18 18 rr_2jup 1 . TYR 19 19 rr_2jup 1 . TYR 20 20 rr_2jup 1 . TYR 21 21 rr_2jup 1 . ASN 22 22 rr_2jup 1 . ASN 23 23 rr_2jup 1 . ARG 24 24 rr_2jup 1 . THR 25 25 rr_2jup 1 . LEU 26 26 rr_2jup 1 . GLU 27 27 rr_2jup 1 . SER 28 28 rr_2jup 1 . THR 29 29 rr_2jup 1 . TRP 30 30 rr_2jup 1 . GLU 31 31 rr_2jup 1 . LYS 32 32 rr_2jup 1 . PRO 33 33 rr_2jup 1 . GLN 34 34 rr_2jup 1 . GLU 35 35 rr_2jup 1 . LEU 36 36 rr_2jup 1 . LYS 37 37 rr_2jup 1 stop_ save_ save_Formin_1 _Entity.Sf_category entity _Entity.Sf_framecode Formin_1 _Entity.Entry_ID rr_2jup _Entity.ID 2 _Entity.Name Formin_1 _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID B _Entity.Polymer_seq_one_letter_code GPPLIPPPP _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 9 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 2 _Entity.Formula_weight 884.0834 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . GLY . rr_2jup 2 2 . PRO . rr_2jup 2 3 . PRO . rr_2jup 2 4 . LEU . rr_2jup 2 5 . ILE . rr_2jup 2 6 . PRO . rr_2jup 2 7 . PRO . rr_2jup 2 8 . PRO . rr_2jup 2 9 . PRO . rr_2jup 2 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . GLY 1 1 rr_2jup 2 . PRO 2 2 rr_2jup 2 . PRO 3 3 rr_2jup 2 . LEU 4 4 rr_2jup 2 . ILE 5 5 rr_2jup 2 . PRO 6 6 rr_2jup 2 . PRO 7 7 rr_2jup 2 . PRO 8 8 rr_2jup 2 . PRO 9 9 rr_2jup 2 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_2jup _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 10 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_2jup _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 2jup.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_2jup 1 1 2jup.mr . . unknown 2 peak "Not applicable" "Not applicable" 0 rr_2jup 1 1 2jup.mr . . "MR format" 3 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_2jup 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2jup _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER TRANSCRIPTION 01-SEP-07 2JUP *TITLE FBP28WW2 DOMAIN IN COMPLEX WITH THE PPLIPPPP PEPTIDE *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: TRANSCRIPTION ELONGATION REGULATOR 1; *COMPND 3 CHAIN: W; *COMPND 4 FRAGMENT: WW 2 DOMAIN, SEQUENCE DATABASE RESIDUES 430-466; *COMPND 5 SYNONYM: TATA BOX-BINDING PROTEIN- ASSOCIATED FACTOR 2S, *COMPND 6 TRANSCRIPTION FACTOR CA150, P144, FORMIN- BINDING PROTEIN *COMPND 7 28, FBP 28; *COMPND 8 ENGINEERED: YES; *COMPND 9 MOL_ID: 2; *COMPND 10 MOLECULE: FORMIN-1; *COMPND 11 CHAIN: P; *COMPND 12 FRAGMENT: SEQUENCE DATABASE RESIDUES, 881-888; *COMPND 13 SYNONYM: LIMB DEFORMITY PROTEIN; *COMPND 14 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; *SOURCE 3 ORGANISM_COMMON: MOUSE; *SOURCE 4 GENE: TCERG1, TAF2S; *SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; *SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PETM30; *SOURCE 8 MOL_ID: 2; *SOURCE 9 SYNTHETIC: YES; *SOURCE 10 OTHER_DETAILS: THE AUTHORS STATE THAT THE PEPTIDE WAS *SOURCE 11 CHEMICALLY SYNTHESIZED AND THE SEQUENCE CORRESPONDS TO THE *SOURCE 12 MOUSE FORMIN PROTEIN. *KEYWDS FBP28WW DOMAIN, PPLIPPPP PEPTIDE, NMR, ALTERNATIVE SPLICING, *KEYWDS 2 COILED COIL, NUCLEUS, POLYMORPHISM, REPRESSOR, *KEYWDS 3 TRANSCRIPTION, TRANSCRIPTION REGULATION, ACTIN-BINDING, *KEYWDS 4 CELL JUNCTION, CYTOPLASM, MEMBRANE, PHOSPHORYLATION *EXPDTA NMR, 10 STRUCTURES *AUTHOR X.RAMIREZ-ESPAIN, L.RUIZ, P.MARTIN-MALPARTIDA, H.OSCHKINAT, *AUTHOR 2 M.J.MACIAS *REVDAT 1 06-NOV-07 2JUP 0 ; save_