data_wwPDB_remediated_restraints_file_for_PDB_entry_2kfo # This wwPDB archive file contains, for PDB entry 2kfo: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_2kfo _Entry.Title "wwPDB remediated NMR restraints for PDB entry 2kfo" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 2kfo" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_2kfo _Assembly.ID 1 _Assembly.Name 2kfo _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 13361.7582 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "Major prion protein" 1 $Major_prion_protein A . no . . . . . . rr_2kfo 1 stop_ save_ save_Major_prion_protein _Entity.Sf_category entity _Entity.Sf_framecode Major_prion_protein _Entity.Entry_ID rr_2kfo _Entity.ID 1 _Entity.Name Major_prion_protein _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; GSVVGGLGGYMLGSAMSRPM IHFGNDWEDRYYRENMYRYP NQVYYRPADQYSNQNNFVHD CVNITIKQHTVTTTTKGENF TETDVKMMERVVEQMCVTQY QKESQAYYDGRRSS ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 114 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 13361.7582 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . GLY . rr_2kfo 1 2 . SER . rr_2kfo 1 3 . VAL . rr_2kfo 1 4 . VAL . rr_2kfo 1 5 . GLY . rr_2kfo 1 6 . GLY . rr_2kfo 1 7 . LEU . rr_2kfo 1 8 . GLY . rr_2kfo 1 9 . GLY . rr_2kfo 1 10 . TYR . rr_2kfo 1 11 . MET . rr_2kfo 1 12 . LEU . rr_2kfo 1 13 . GLY . rr_2kfo 1 14 . SER . rr_2kfo 1 15 . ALA . rr_2kfo 1 16 . MET . rr_2kfo 1 17 . SER . rr_2kfo 1 18 . ARG . rr_2kfo 1 19 . PRO . rr_2kfo 1 20 . MET . rr_2kfo 1 21 . ILE . rr_2kfo 1 22 . HIS . rr_2kfo 1 23 . PHE . rr_2kfo 1 24 . GLY . rr_2kfo 1 25 . ASN . rr_2kfo 1 26 . ASP . rr_2kfo 1 27 . TRP . rr_2kfo 1 28 . GLU . rr_2kfo 1 29 . ASP . rr_2kfo 1 30 . ARG . rr_2kfo 1 31 . TYR . rr_2kfo 1 32 . TYR . rr_2kfo 1 33 . ARG . rr_2kfo 1 34 . GLU . rr_2kfo 1 35 . ASN . rr_2kfo 1 36 . MET . rr_2kfo 1 37 . TYR . rr_2kfo 1 38 . ARG . rr_2kfo 1 39 . TYR . rr_2kfo 1 40 . PRO . rr_2kfo 1 41 . ASN . rr_2kfo 1 42 . GLN . rr_2kfo 1 43 . VAL . rr_2kfo 1 44 . TYR . rr_2kfo 1 45 . TYR . rr_2kfo 1 46 . ARG . rr_2kfo 1 47 . PRO . rr_2kfo 1 48 . ALA . rr_2kfo 1 49 . ASP . rr_2kfo 1 50 . GLN . rr_2kfo 1 51 . TYR . rr_2kfo 1 52 . SER . rr_2kfo 1 53 . ASN . rr_2kfo 1 54 . GLN . rr_2kfo 1 55 . ASN . rr_2kfo 1 56 . ASN . rr_2kfo 1 57 . PHE . rr_2kfo 1 58 . VAL . rr_2kfo 1 59 . HIS . rr_2kfo 1 60 . ASP . rr_2kfo 1 61 . CYS . rr_2kfo 1 62 . VAL . rr_2kfo 1 63 . ASN . rr_2kfo 1 64 . ILE . rr_2kfo 1 65 . THR . rr_2kfo 1 66 . ILE . rr_2kfo 1 67 . LYS . rr_2kfo 1 68 . GLN . rr_2kfo 1 69 . HIS . rr_2kfo 1 70 . THR . rr_2kfo 1 71 . VAL . rr_2kfo 1 72 . THR . rr_2kfo 1 73 . THR . rr_2kfo 1 74 . THR . rr_2kfo 1 75 . THR . rr_2kfo 1 76 . LYS . rr_2kfo 1 77 . GLY . rr_2kfo 1 78 . GLU . rr_2kfo 1 79 . ASN . rr_2kfo 1 80 . PHE . rr_2kfo 1 81 . THR . rr_2kfo 1 82 . GLU . rr_2kfo 1 83 . THR . rr_2kfo 1 84 . ASP . rr_2kfo 1 85 . VAL . rr_2kfo 1 86 . LYS . rr_2kfo 1 87 . MET . rr_2kfo 1 88 . MET . rr_2kfo 1 89 . GLU . rr_2kfo 1 90 . ARG . rr_2kfo 1 91 . VAL . rr_2kfo 1 92 . VAL . rr_2kfo 1 93 . GLU . rr_2kfo 1 94 . GLN . rr_2kfo 1 95 . MET . rr_2kfo 1 96 . CYS . rr_2kfo 1 97 . VAL . rr_2kfo 1 98 . THR . rr_2kfo 1 99 . GLN . rr_2kfo 1 100 . TYR . rr_2kfo 1 101 . GLN . rr_2kfo 1 102 . LYS . rr_2kfo 1 103 . GLU . rr_2kfo 1 104 . SER . rr_2kfo 1 105 . GLN . rr_2kfo 1 106 . ALA . rr_2kfo 1 107 . TYR . rr_2kfo 1 108 . TYR . rr_2kfo 1 109 . ASP . rr_2kfo 1 110 . GLY . rr_2kfo 1 111 . ARG . rr_2kfo 1 112 . ARG . rr_2kfo 1 113 . SER . rr_2kfo 1 114 . SER . rr_2kfo 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . GLY 1 1 rr_2kfo 1 . SER 2 2 rr_2kfo 1 . VAL 3 3 rr_2kfo 1 . VAL 4 4 rr_2kfo 1 . GLY 5 5 rr_2kfo 1 . GLY 6 6 rr_2kfo 1 . LEU 7 7 rr_2kfo 1 . GLY 8 8 rr_2kfo 1 . GLY 9 9 rr_2kfo 1 . TYR 10 10 rr_2kfo 1 . MET 11 11 rr_2kfo 1 . LEU 12 12 rr_2kfo 1 . GLY 13 13 rr_2kfo 1 . SER 14 14 rr_2kfo 1 . ALA 15 15 rr_2kfo 1 . MET 16 16 rr_2kfo 1 . SER 17 17 rr_2kfo 1 . ARG 18 18 rr_2kfo 1 . PRO 19 19 rr_2kfo 1 . MET 20 20 rr_2kfo 1 . ILE 21 21 rr_2kfo 1 . HIS 22 22 rr_2kfo 1 . PHE 23 23 rr_2kfo 1 . GLY 24 24 rr_2kfo 1 . ASN 25 25 rr_2kfo 1 . ASP 26 26 rr_2kfo 1 . TRP 27 27 rr_2kfo 1 . GLU 28 28 rr_2kfo 1 . ASP 29 29 rr_2kfo 1 . ARG 30 30 rr_2kfo 1 . TYR 31 31 rr_2kfo 1 . TYR 32 32 rr_2kfo 1 . ARG 33 33 rr_2kfo 1 . GLU 34 34 rr_2kfo 1 . ASN 35 35 rr_2kfo 1 . MET 36 36 rr_2kfo 1 . TYR 37 37 rr_2kfo 1 . ARG 38 38 rr_2kfo 1 . TYR 39 39 rr_2kfo 1 . PRO 40 40 rr_2kfo 1 . ASN 41 41 rr_2kfo 1 . GLN 42 42 rr_2kfo 1 . VAL 43 43 rr_2kfo 1 . TYR 44 44 rr_2kfo 1 . TYR 45 45 rr_2kfo 1 . ARG 46 46 rr_2kfo 1 . PRO 47 47 rr_2kfo 1 . ALA 48 48 rr_2kfo 1 . ASP 49 49 rr_2kfo 1 . GLN 50 50 rr_2kfo 1 . TYR 51 51 rr_2kfo 1 . SER 52 52 rr_2kfo 1 . ASN 53 53 rr_2kfo 1 . GLN 54 54 rr_2kfo 1 . ASN 55 55 rr_2kfo 1 . ASN 56 56 rr_2kfo 1 . PHE 57 57 rr_2kfo 1 . VAL 58 58 rr_2kfo 1 . HIS 59 59 rr_2kfo 1 . ASP 60 60 rr_2kfo 1 . CYS 61 61 rr_2kfo 1 . VAL 62 62 rr_2kfo 1 . ASN 63 63 rr_2kfo 1 . ILE 64 64 rr_2kfo 1 . THR 65 65 rr_2kfo 1 . ILE 66 66 rr_2kfo 1 . LYS 67 67 rr_2kfo 1 . GLN 68 68 rr_2kfo 1 . HIS 69 69 rr_2kfo 1 . THR 70 70 rr_2kfo 1 . VAL 71 71 rr_2kfo 1 . THR 72 72 rr_2kfo 1 . THR 73 73 rr_2kfo 1 . THR 74 74 rr_2kfo 1 . THR 75 75 rr_2kfo 1 . LYS 76 76 rr_2kfo 1 . GLY 77 77 rr_2kfo 1 . GLU 78 78 rr_2kfo 1 . ASN 79 79 rr_2kfo 1 . PHE 80 80 rr_2kfo 1 . THR 81 81 rr_2kfo 1 . GLU 82 82 rr_2kfo 1 . THR 83 83 rr_2kfo 1 . ASP 84 84 rr_2kfo 1 . VAL 85 85 rr_2kfo 1 . LYS 86 86 rr_2kfo 1 . MET 87 87 rr_2kfo 1 . MET 88 88 rr_2kfo 1 . GLU 89 89 rr_2kfo 1 . ARG 90 90 rr_2kfo 1 . VAL 91 91 rr_2kfo 1 . VAL 92 92 rr_2kfo 1 . GLU 93 93 rr_2kfo 1 . GLN 94 94 rr_2kfo 1 . MET 95 95 rr_2kfo 1 . CYS 96 96 rr_2kfo 1 . VAL 97 97 rr_2kfo 1 . THR 98 98 rr_2kfo 1 . GLN 99 99 rr_2kfo 1 . TYR 100 100 rr_2kfo 1 . GLN 101 101 rr_2kfo 1 . LYS 102 102 rr_2kfo 1 . GLU 103 103 rr_2kfo 1 . SER 104 104 rr_2kfo 1 . GLN 105 105 rr_2kfo 1 . ALA 106 106 rr_2kfo 1 . TYR 107 107 rr_2kfo 1 . TYR 108 108 rr_2kfo 1 . ASP 109 109 rr_2kfo 1 . GLY 110 110 rr_2kfo 1 . ARG 111 111 rr_2kfo 1 . ARG 112 112 rr_2kfo 1 . SER 113 113 rr_2kfo 1 . SER 114 114 rr_2kfo 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_2kfo _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 20 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_2kfo _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 2kfo.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_2kfo 1 1 2kfo.mr . . STAR 2 "chemical shift" "Not applicable" "Not applicable" 0 rr_2kfo 1 1 2kfo.mr . . "MR format" 3 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_2kfo 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2kfo _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER UNKNOWN FUNCTION 24-FEB-09 2KFO *TITLE MOUSE PRION PROTEIN (121-231) WITH MUTATION V166A *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: MAJOR PRION PROTEIN; *COMPND 3 CHAIN: A; *COMPND 4 SYNONYM: PRP, PRP27-30, PRP33-35C; *COMPND 5 ENGINEERED: YES; *COMPND 6 MUTATION: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; *SOURCE 3 ORGANISM_COMMON: MOUSE; *SOURCE 4 ORGANISM_TAXID: 10090; *SOURCE 5 GENE: PRN-P, PRNP, PRP; *SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; *SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PRSETA *KEYWDS MOUSE PRION PROTEIN, MUTATION V166A, LONG-RANGE EFFECT, CELL *KEYWDS 2 MEMBRANE, GLYCOPROTEIN, GOLGI APPARATUS, GPI-ANCHOR, *KEYWDS 3 HYDROXYLATION, LIPOPROTEIN, MEMBRANE, POLYMORPHISM, PRION, *KEYWDS 4 UNKNOWN FUNCTION *EXPDTA SOLUTION NMR *NUMMDL 20 *AUTHOR B.CHRISTEN, S.HORNEMANN, F.F.DAMBERGER, K.WUTHRICH *REVDAT 1 16-JUN-09 2KFO 0 ; save_