data_wwPDB_remediated_restraints_file_for_PDB_entry_2kft # This wwPDB archive file contains, for PDB entry 2kft: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_2kft _Entry.Title "wwPDB remediated NMR restraints for PDB entry 2kft" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 2kft" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_2kft _Assembly.ID 1 _Assembly.Name 2kft _Assembly.Number_of_components 4 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 2 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 8428.2105 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "Autoimmune regulator" 1 $Autoimmune_regulator A . no . . . . . . rr_2kft 1 2 "Histone H3" 3 $Histone_H3 B . no . . . . . . rr_2kft 1 3 "ZINC ION" 2 $ZINC_ION C . no . . . . . . rr_2kft 1 4 "ZINC ION" 2 $ZINC_ION D . no . . . . . . rr_2kft 1 stop_ save_ save_Autoimmune_regulator _Entity.Sf_category entity _Entity.Sf_framecode Autoimmune_regulator _Entity.Entry_ID rr_2kft _Entity.ID 1 _Entity.Name Autoimmune_regulator _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; GSKNEDECAVCRDGGELICC DGCPRAFHLACLSPPLREIP SGTWRCSSCLQATVQE ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 56 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 6003.718 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . GLY . rr_2kft 1 2 . SER . rr_2kft 1 3 . LYS . rr_2kft 1 4 . ASN . rr_2kft 1 5 . GLU . rr_2kft 1 6 . ASP . rr_2kft 1 7 . GLU . rr_2kft 1 8 . CYS . rr_2kft 1 9 . ALA . rr_2kft 1 10 . VAL . rr_2kft 1 11 . CYS . rr_2kft 1 12 . ARG . rr_2kft 1 13 . ASP . rr_2kft 1 14 . GLY . rr_2kft 1 15 . GLY . rr_2kft 1 16 . GLU . rr_2kft 1 17 . LEU . rr_2kft 1 18 . ILE . rr_2kft 1 19 . CYS . rr_2kft 1 20 . CYS . rr_2kft 1 21 . ASP . rr_2kft 1 22 . GLY . rr_2kft 1 23 . CYS . rr_2kft 1 24 . PRO . rr_2kft 1 25 . ARG . rr_2kft 1 26 . ALA . rr_2kft 1 27 . PHE . rr_2kft 1 28 . HIS . rr_2kft 1 29 . LEU . rr_2kft 1 30 . ALA . rr_2kft 1 31 . CYS . rr_2kft 1 32 . LEU . rr_2kft 1 33 . SER . rr_2kft 1 34 . PRO . rr_2kft 1 35 . PRO . rr_2kft 1 36 . LEU . rr_2kft 1 37 . ARG . rr_2kft 1 38 . GLU . rr_2kft 1 39 . ILE . rr_2kft 1 40 . PRO . rr_2kft 1 41 . SER . rr_2kft 1 42 . GLY . rr_2kft 1 43 . THR . rr_2kft 1 44 . TRP . rr_2kft 1 45 . ARG . rr_2kft 1 46 . CYS . rr_2kft 1 47 . SER . rr_2kft 1 48 . SER . rr_2kft 1 49 . CYS . rr_2kft 1 50 . LEU . rr_2kft 1 51 . GLN . rr_2kft 1 52 . ALA . rr_2kft 1 53 . THR . rr_2kft 1 54 . VAL . rr_2kft 1 55 . GLN . rr_2kft 1 56 . GLU . rr_2kft 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . GLY 1 1 rr_2kft 1 . SER 2 2 rr_2kft 1 . LYS 3 3 rr_2kft 1 . ASN 4 4 rr_2kft 1 . GLU 5 5 rr_2kft 1 . ASP 6 6 rr_2kft 1 . GLU 7 7 rr_2kft 1 . CYS 8 8 rr_2kft 1 . ALA 9 9 rr_2kft 1 . VAL 10 10 rr_2kft 1 . CYS 11 11 rr_2kft 1 . ARG 12 12 rr_2kft 1 . ASP 13 13 rr_2kft 1 . GLY 14 14 rr_2kft 1 . GLY 15 15 rr_2kft 1 . GLU 16 16 rr_2kft 1 . LEU 17 17 rr_2kft 1 . ILE 18 18 rr_2kft 1 . CYS 19 19 rr_2kft 1 . CYS 20 20 rr_2kft 1 . ASP 21 21 rr_2kft 1 . GLY 22 22 rr_2kft 1 . CYS 23 23 rr_2kft 1 . PRO 24 24 rr_2kft 1 . ARG 25 25 rr_2kft 1 . ALA 26 26 rr_2kft 1 . PHE 27 27 rr_2kft 1 . HIS 28 28 rr_2kft 1 . LEU 29 29 rr_2kft 1 . ALA 30 30 rr_2kft 1 . CYS 31 31 rr_2kft 1 . LEU 32 32 rr_2kft 1 . SER 33 33 rr_2kft 1 . PRO 34 34 rr_2kft 1 . PRO 35 35 rr_2kft 1 . LEU 36 36 rr_2kft 1 . ARG 37 37 rr_2kft 1 . GLU 38 38 rr_2kft 1 . ILE 39 39 rr_2kft 1 . PRO 40 40 rr_2kft 1 . SER 41 41 rr_2kft 1 . GLY 42 42 rr_2kft 1 . THR 43 43 rr_2kft 1 . TRP 44 44 rr_2kft 1 . ARG 45 45 rr_2kft 1 . CYS 46 46 rr_2kft 1 . SER 47 47 rr_2kft 1 . SER 48 48 rr_2kft 1 . CYS 49 49 rr_2kft 1 . LEU 50 50 rr_2kft 1 . GLN 51 51 rr_2kft 1 . ALA 52 52 rr_2kft 1 . THR 53 53 rr_2kft 1 . VAL 54 54 rr_2kft 1 . GLN 55 55 rr_2kft 1 . GLU 56 56 rr_2kft 1 stop_ save_ save_ZINC_ION _Entity.Sf_category entity _Entity.Sf_framecode ZINC_ION _Entity.Entry_ID rr_2kft _Entity.ID 2 _Entity.Name ZINC_ION _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_chirality yes _Entity.Nstd_linkage no _Entity.Nonpolymer_comp_ID ZN _Entity.Nonpolymer_comp_label $chem_comp_ZN _Entity.Number_of_monomers 1 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 2 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . ZN . rr_2kft 2 stop_ save_ save_Histone_H3 _Entity.Sf_category entity _Entity.Sf_framecode Histone_H3 _Entity.Entry_ID rr_2kft _Entity.ID 3 _Entity.Name Histone_H3 _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID B _Entity.Polymer_seq_one_letter_code ; ARTKQTARKSTGGKAPRKQL C ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 21 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 3 _Entity.Formula_weight 2293.7325 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . ALA . rr_2kft 3 2 . ARG . rr_2kft 3 3 . THR . rr_2kft 3 4 . LYS . rr_2kft 3 5 . GLN . rr_2kft 3 6 . THR . rr_2kft 3 7 . ALA . rr_2kft 3 8 . ARG . rr_2kft 3 9 . LYS . rr_2kft 3 10 . SER . rr_2kft 3 11 . THR . rr_2kft 3 12 . GLY . rr_2kft 3 13 . GLY . rr_2kft 3 14 . LYS . rr_2kft 3 15 . ALA . rr_2kft 3 16 . PRO . rr_2kft 3 17 . ARG . rr_2kft 3 18 . LYS . rr_2kft 3 19 . GLN . rr_2kft 3 20 . LEU . rr_2kft 3 21 . CYS . rr_2kft 3 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . ALA 1 1 rr_2kft 3 . ARG 2 2 rr_2kft 3 . THR 3 3 rr_2kft 3 . LYS 4 4 rr_2kft 3 . GLN 5 5 rr_2kft 3 . THR 6 6 rr_2kft 3 . ALA 7 7 rr_2kft 3 . ARG 8 8 rr_2kft 3 . LYS 9 9 rr_2kft 3 . SER 10 10 rr_2kft 3 . THR 11 11 rr_2kft 3 . GLY 12 12 rr_2kft 3 . GLY 13 13 rr_2kft 3 . LYS 14 14 rr_2kft 3 . ALA 15 15 rr_2kft 3 . PRO 16 16 rr_2kft 3 . ARG 17 17 rr_2kft 3 . LYS 18 18 rr_2kft 3 . GLN 19 19 rr_2kft 3 . LEU 20 20 rr_2kft 3 . CYS 21 21 rr_2kft 3 stop_ save_ save_chem_comp_ZN _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_ZN _Chem_comp.Entry_ID rr_2kft _Chem_comp.ID ZN _Chem_comp.Name "ZINC ION" _Chem_comp.Type non-polymer _Chem_comp.PDB_code ZN _Chem_comp.Formal_charge 2 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula Zn _Chem_comp.Formula_weight 65.38 save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_2kft _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 20 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_2kft _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 2kft.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_2kft 1 1 2kft.mr . . NMRView 2 peak "Not applicable" "Not applicable" 0 rr_2kft 1 1 2kft.mr . . NMRView 3 peak "Not applicable" "Not applicable" 0 rr_2kft 1 1 2kft.mr . . NMRView 4 peak "Not applicable" "Not applicable" 0 rr_2kft 1 1 2kft.mr . . NMRView 5 peak "Not applicable" "Not applicable" 0 rr_2kft 1 1 2kft.mr . . NMRView 6 "chemical shift" "Not applicable" "Not applicable" 0 rr_2kft 1 1 2kft.mr . . NMRView 7 peak "Not applicable" "Not applicable" 0 rr_2kft 1 1 2kft.mr . . "MR format" 8 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_2kft 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2kft _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER TRANSCRIPTION/PROTEIN BINDING 27-FEB-09 2KFT *TITLE NMR SOLUTION STRUCTURE OF THE FIRST PHD FINGER DOMAIN OF *TITLE 2 HUMAN AUTOIMMUNE REGULATOR (AIRE) IN COMPLEX WITH HISTONE *TITLE 3 H3(1-20CYS) PEPTIDE *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: AUTOIMMUNE REGULATOR; *COMPND 3 CHAIN: A; *COMPND 4 FRAGMENT: AIRE PHD-TYPE 1 ZINC FINGER; *COMPND 5 SYNONYM: AUTOIMMUNE POLYENDOCRINOPATHY CANDIDIASIS *COMPND 6 ECTODERMAL DYSTROPHY PROTEIN, APECED PROTEIN; *COMPND 7 ENGINEERED: YES; *COMPND 8 MOL_ID: 2; *COMPND 9 MOLECULE: HISTONE H3; *COMPND 10 CHAIN: B; *COMPND 11 FRAGMENT: HISTONE H3 1-20CYS N-TERMINAL DOMAIN; *COMPND 12 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; *SOURCE 3 ORGANISM_COMMON: HUMAN; *SOURCE 4 ORGANISM_TAXID: 9606; *SOURCE 5 GENE: AIRE, APECED; *SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; *SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); *SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-4T3; *SOURCE 10 MOL_ID: 2; *SOURCE 11 SYNTHETIC: YES *KEYWDS PHD FINGER, HISTONE CODE, AIRE, APECED, TRANSCRIPTION, *KEYWDS 2 ALTERNATIVE SPLICING, CYTOPLASM, DISEASE MUTATION, DNA- *KEYWDS 3 BINDING, METAL-BINDING, NUCLEUS, PHOSPHOPROTEIN, *KEYWDS 4 POLYMORPHISM, TRANSCRIPTION REGULATION, ZINC, ZINC-FINGER, *KEYWDS 5 CHROMOSOMAL PROTEIN, NUCLEOSOME CORE, TRANSCRIPTION/PROTEIN *KEYWDS 6 BINDING COMPLEX *EXPDTA SOLUTION NMR *NUMMDL 20 *AUTHOR S.CHAKRAVARTY, L.ZENG, M.ZHOU *REVDAT 1 28-APR-09 2KFT 0 ; save_