data_wwPDB_remediated_restraints_file_for_PDB_entry_2lcm # This wwPDB archive file contains, for PDB entry 2lcm: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389-396. ####################### # Entry information # ####################### save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_2lcm _Entry.Title 'wwPDB remediated NMR restraints for PDB entry 2lcm' _Entry.Version_type original _Entry.NMR_STAR_version 3.1.0.8 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details 'Contains the remediated restraint lists and coordinates for PDB entry 2lcm' _Entry.PDB_coordinate_file_version 3.20 loop_ _Related_entries.Database_name _Related_entries.Database_accession_code _Related_entries.Relationship _Related_entries.Entry_ID PDB 2lcm 'Master copy' rr_2lcm stop_ save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_2lcm _Assembly.ID 1 _Assembly.Name 2lcm _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'not present' _Assembly.Molecular_mass 3350.2837 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 'Voltage dependent N type calcium channel subunit alpha 1B' 1 $Voltage_dependent_N_type_calcium_channel_subunit_alpha_1B A . no . . . . . . rr_2lcm 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save_Voltage_dependent_N_type_calcium_channel_subunit_alpha_1B _Entity.Sf_category entity _Entity.Sf_framecode Voltage_dependent_N_type_calcium_channel_subunit_alpha_1B _Entity.Entry_ID rr_2lcm _Entity.ID 1 _Entity.Name Voltage_dependent_N_type_calcium_channel_subunit_alpha_1B _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; KDINTIKSLRVLRVLRPLKT IKRLPKLK ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 28 _Entity.Paramagnetic no _Entity.Thiol_state 'not present' _Entity.Parent_entity_ID 1 _Entity.Formula_weight 3350.2837 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . LYS . rr_2lcm 1 2 . ASP . rr_2lcm 1 3 . ILE . rr_2lcm 1 4 . ASN . rr_2lcm 1 5 . THR . rr_2lcm 1 6 . ILE . rr_2lcm 1 7 . LYS . rr_2lcm 1 8 . SER . rr_2lcm 1 9 . LEU . rr_2lcm 1 10 . ARG . rr_2lcm 1 11 . VAL . rr_2lcm 1 12 . LEU . rr_2lcm 1 13 . ARG . rr_2lcm 1 14 . VAL . rr_2lcm 1 15 . LEU . rr_2lcm 1 16 . ARG . rr_2lcm 1 17 . PRO . rr_2lcm 1 18 . LEU . rr_2lcm 1 19 . LYS . rr_2lcm 1 20 . THR . rr_2lcm 1 21 . ILE . rr_2lcm 1 22 . LYS . rr_2lcm 1 23 . ARG . rr_2lcm 1 24 . LEU . rr_2lcm 1 25 . PRO . rr_2lcm 1 26 . LYS . rr_2lcm 1 27 . LEU . rr_2lcm 1 28 . LYS . rr_2lcm 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . LYS 1 1 rr_2lcm 1 . ASP 2 2 rr_2lcm 1 . ILE 3 3 rr_2lcm 1 . ASN 4 4 rr_2lcm 1 . THR 5 5 rr_2lcm 1 . ILE 6 6 rr_2lcm 1 . LYS 7 7 rr_2lcm 1 . SER 8 8 rr_2lcm 1 . LEU 9 9 rr_2lcm 1 . ARG 10 10 rr_2lcm 1 . VAL 11 11 rr_2lcm 1 . LEU 12 12 rr_2lcm 1 . ARG 13 13 rr_2lcm 1 . VAL 14 14 rr_2lcm 1 . LEU 15 15 rr_2lcm 1 . ARG 16 16 rr_2lcm 1 . PRO 17 17 rr_2lcm 1 . LEU 18 18 rr_2lcm 1 . LYS 19 19 rr_2lcm 1 . THR 20 20 rr_2lcm 1 . ILE 21 21 rr_2lcm 1 . LYS 22 22 rr_2lcm 1 . ARG 23 23 rr_2lcm 1 . LEU 24 24 rr_2lcm 1 . PRO 25 25 rr_2lcm 1 . LYS 26 26 rr_2lcm 1 . LEU 27 27 rr_2lcm 1 . LYS 28 28 rr_2lcm 1 stop_ save_ ############################## # Structure determinations # ############################## ########################## # Conformer statistics # ########################## save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_2lcm _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 20 save_ ########################### # Constraint Statistics # ########################### save_constraint_statistics _Constraint_stat_list.Sf_framecode constraint_statistics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_2lcm _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 2lcm.mr . . 'MR format' 1 comment 'Not applicable' 'Not applicable' 0 rr_2lcm 1 1 2lcm.mr . . DYANA/DIANA 2 distance 'hydrogen bond' simple 26 rr_2lcm 1 1 2lcm.mr . . 'MR format' 3 'nomenclature mapping' 'Not applicable' 'Not applicable' 0 rr_2lcm 1 stop_ save_ save_DYANA/DIANA_distance_constraints_2 _Gen_dist_constraint_list.Sf_category general_distance_constraints _Gen_dist_constraint_list.Sf_framecode DYANA/DIANA_distance_constraints_2 _Gen_dist_constraint_list.Entry_ID rr_2lcm _Gen_dist_constraint_list.ID 1 _Gen_dist_constraint_list.Constraint_type 'hydrogen bond' _Gen_dist_constraint_list.Details 'Generated by Wattos' _Gen_dist_constraint_list.Constraint_file_ID 1 _Gen_dist_constraint_list.Block_ID 2 loop_ _Gen_dist_constraint_software.Software_ID _Gen_dist_constraint_software.Software_label _Gen_dist_constraint_software.Method_ID _Gen_dist_constraint_software.Method_label _Gen_dist_constraint_software.Entry_ID _Gen_dist_constraint_software.Gen_dist_constraint_list_ID . . . . rr_2lcm 1 stop_ loop_ _Gen_dist_constraint.ID _Gen_dist_constraint.Member_ID _Gen_dist_constraint.Member_logic_code _Gen_dist_constraint.Assembly_atom_ID_1 _Gen_dist_constraint.Entity_assembly_ID_1 _Gen_dist_constraint.Entity_ID_1 _Gen_dist_constraint.Comp_index_ID_1 _Gen_dist_constraint.Seq_ID_1 _Gen_dist_constraint.Comp_ID_1 _Gen_dist_constraint.Atom_ID_1 _Gen_dist_constraint.Atom_type_1 _Gen_dist_constraint.Atom_isotope_number_1 _Gen_dist_constraint.Resonance_ID_1 _Gen_dist_constraint.Assembly_atom_ID_2 _Gen_dist_constraint.Entity_assembly_ID_2 _Gen_dist_constraint.Entity_ID_2 _Gen_dist_constraint.Comp_index_ID_2 _Gen_dist_constraint.Seq_ID_2 _Gen_dist_constraint.Comp_ID_2 _Gen_dist_constraint.Atom_ID_2 _Gen_dist_constraint.Atom_type_2 _Gen_dist_constraint.Atom_isotope_number_2 _Gen_dist_constraint.Resonance_ID_2 _Gen_dist_constraint.Intensity_val _Gen_dist_constraint.Intensity_lower_val_err _Gen_dist_constraint.Intensity_upper_val_err _Gen_dist_constraint.Distance_val _Gen_dist_constraint.Distance_lower_bound_val _Gen_dist_constraint.Distance_upper_bound_val _Gen_dist_constraint.Contribution_fractional_val _Gen_dist_constraint.Spectral_peak_ID _Gen_dist_constraint.Spectral_peak_list_ID _Gen_dist_constraint.PDB_record_ID_1 _Gen_dist_constraint.PDB_model_num_1 _Gen_dist_constraint.PDB_strand_ID_1 _Gen_dist_constraint.PDB_ins_code_1 _Gen_dist_constraint.PDB_residue_no_1 _Gen_dist_constraint.PDB_residue_name_1 _Gen_dist_constraint.PDB_atom_name_1 _Gen_dist_constraint.PDB_record_ID_2 _Gen_dist_constraint.PDB_model_num_2 _Gen_dist_constraint.PDB_strand_ID_2 _Gen_dist_constraint.PDB_ins_code_2 _Gen_dist_constraint.PDB_residue_no_2 _Gen_dist_constraint.PDB_residue_name_2 _Gen_dist_constraint.PDB_atom_name_2 _Gen_dist_constraint.Auth_entity_assembly_ID_1 _Gen_dist_constraint.Auth_asym_ID_1 _Gen_dist_constraint.Auth_chain_ID_1 _Gen_dist_constraint.Auth_seq_ID_1 _Gen_dist_constraint.Auth_comp_ID_1 _Gen_dist_constraint.Auth_atom_ID_1 _Gen_dist_constraint.Auth_alt_ID_1 _Gen_dist_constraint.Auth_atom_name_1 _Gen_dist_constraint.Auth_entity_assembly_ID_2 _Gen_dist_constraint.Auth_asym_ID_2 _Gen_dist_constraint.Auth_chain_ID_2 _Gen_dist_constraint.Auth_seq_ID_2 _Gen_dist_constraint.Auth_comp_ID_2 _Gen_dist_constraint.Auth_atom_ID_2 _Gen_dist_constraint.Auth_alt_ID_2 _Gen_dist_constraint.Auth_atom_name_2 _Gen_dist_constraint.Entry_ID _Gen_dist_constraint.Gen_dist_constraint_list_ID 1 1 . . 1 1 2 2 ASP O O . . . 1 1 6 6 ILE H H . . . . . . . 2.0 . . . . . A . 2 ASP O . . A . 6 ILE H . . . 2 ASP O . . . . . 6 ILE H . . rr_2lcm 1 2 1 . . 1 1 2 2 ASP O O . . . 1 1 6 6 ILE N N . . . . . . . 3.0 . . . . . A . 2 ASP O . . A . 6 ILE N . . . 2 ASP O . . . . . 6 ILE N . . rr_2lcm 1 3 1 . . 1 1 4 4 ASN O O . . . 1 1 8 8 SER H H . . . . . . . 2.0 . . . . . A . 4 ASN O . . A . 8 SER H . . . 4 ASN O . . . . . 8 SER H . . rr_2lcm 1 4 1 . . 1 1 4 4 ASN O O . . . 1 1 8 8 SER N N . . . . . . . 3.0 . . . . . A . 4 ASN O . . A . 8 SER N . . . 4 ASN O . . . . . 8 SER N . . rr_2lcm 1 5 1 . . 1 1 6 6 ILE O O . . . 1 1 10 10 ARG H H . . . . . . . 2.0 . . . . . A . 6 ILE O . . A . 10 ARG H . . . 6 ILE O . . . . . 10 ARG H . . rr_2lcm 1 6 1 . . 1 1 6 6 ILE O O . . . 1 1 10 10 ARG N N . . . . . . . 3.0 . . . . . A . 6 ILE O . . A . 10 ARG N . . . 6 ILE O . . . . . 10 ARG N . . rr_2lcm 1 7 1 . . 1 1 8 8 SER O O . . . 1 1 12 12 LEU H H . . . . . . . 2.0 . . . . . A . 8 SER O . . A . 12 LEU H . . . 8 SER O . . . . . 12 LEU H . . rr_2lcm 1 8 1 . . 1 1 8 8 SER O O . . . 1 1 12 12 LEU N N . . . . . . . 3.0 . . . . . A . 8 SER O . . A . 12 LEU N . . . 8 SER O . . . . . 12 LEU N . . rr_2lcm 1 9 1 . . 1 1 10 10 ARG O O . . . 1 1 14 14 VAL H H . . . . . . . 2.0 . . . . . A . 10 ARG O . . A . 14 VAL H . . . 10 ARG O . . . . . 14 VAL H . . rr_2lcm 1 10 1 . . 1 1 10 10 ARG O O . . . 1 1 14 14 VAL N N . . . . . . . 3.0 . . . . . A . 10 ARG O . . A . 14 VAL N . . . 10 ARG O . . . . . 14 VAL N . . rr_2lcm 1 11 1 . . 1 1 11 11 VAL O O . . . 1 1 15 15 LEU H H . . . . . . . 2.0 . . . . . A . 11 VAL O . . A . 15 LEU H . . . 11 VAL O . . . . . 15 LEU H . . rr_2lcm 1 12 1 . . 1 1 11 11 VAL O O . . . 1 1 15 15 LEU N N . . . . . . . 3.0 . . . . . A . 11 VAL O . . A . 15 LEU N . . . 11 VAL O . . . . . 15 LEU N . . rr_2lcm 1 13 1 . . 1 1 12 12 LEU O O . . . 1 1 16 16 ARG H H . . . . . . . 2.0 . . . . . A . 12 LEU O . . A . 16 ARG H . . . 12 LEU O . . . . . 16 ARG H . . rr_2lcm 1 14 1 . . 1 1 12 12 LEU O O . . . 1 1 16 16 ARG N N . . . . . . . 3.0 . . . . . A . 12 LEU O . . A . 16 ARG N . . . 12 LEU O . . . . . 16 ARG N . . rr_2lcm 1 15 1 . . 1 1 14 14 VAL O O . . . 1 1 18 18 LEU H H . . . . . . . 2.0 . . . . . A . 14 VAL O . . A . 18 LEU H . . . 14 VAL O . . . . . 18 LEU H . . rr_2lcm 1 16 1 . . 1 1 14 14 VAL O O . . . 1 1 18 18 LEU N N . . . . . . . 3.0 . . . . . A . 14 VAL O . . A . 18 LEU N . . . 14 VAL O . . . . . 18 LEU N . . rr_2lcm 1 17 1 . . 1 1 16 16 ARG O O . . . 1 1 20 20 THR H H . . . . . . . 2.0 . . . . . A . 16 ARG O . . A . 20 THR H . . . 16 ARG O . . . . . 20 THR H . . rr_2lcm 1 18 1 . . 1 1 16 16 ARG O O . . . 1 1 20 20 THR N N . . . . . . . 3.0 . . . . . A . 16 ARG O . . A . 20 THR N . . . 16 ARG O . . . . . 20 THR N . . rr_2lcm 1 19 1 . . 1 1 17 17 PRO O O . . . 1 1 21 21 ILE H H . . . . . . . 2.0 . . . . . A . 17 PRO O . . A . 21 ILE H . . . 17 PRO O . . . . . 21 ILE H . . rr_2lcm 1 20 1 . . 1 1 17 17 PRO O O . . . 1 1 21 21 ILE N N . . . . . . . 3.0 . . . . . A . 17 PRO O . . A . 21 ILE N . . . 17 PRO O . . . . . 21 ILE N . . rr_2lcm 1 21 1 . . 1 1 18 18 LEU O O . . . 1 1 22 22 LYS H H . . . . . . . 2.0 . . . . . A . 18 LEU O . . A . 22 LYS H . . . 18 LEU O . . . . . 22 LYS H . . rr_2lcm 1 22 1 . . 1 1 18 18 LEU O O . . . 1 1 22 22 LYS N N . . . . . . . 3.0 . . . . . A . 18 LEU O . . A . 22 LYS N . . . 18 LEU O . . . . . 22 LYS N . . rr_2lcm 1 23 1 . . 1 1 19 19 LYS O O . . . 1 1 23 23 ARG H H . . . . . . . 2.0 . . . . . A . 19 LYS O . . A . 23 ARG H . . . 19 LYS O . . . . . 23 ARG H . . rr_2lcm 1 24 1 . . 1 1 19 19 LYS O O . . . 1 1 23 23 ARG N N . . . . . . . 3.0 . . . . . A . 19 LYS O . . A . 23 ARG N . . . 19 LYS O . . . . . 23 ARG N . . rr_2lcm 1 25 1 . . 1 1 22 22 LYS O O . . . 1 1 26 26 LYS H H . . . . . . . 2.0 . . . . . A . 22 LYS O . . A . 26 LYS H . . . 22 LYS O . . . . . 26 LYS H . . rr_2lcm 1 26 1 . . 1 1 22 22 LYS O O . . . 1 1 26 26 LYS N N . . . . . . . 3.0 . . . . . A . 22 LYS O . . A . 26 LYS N . . . 22 LYS O . . . . . 26 LYS N . . rr_2lcm 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2lcm _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details 'Generated by Wattos' _Org_constr_file_comment.Comment '*HEADER MEMBRANE PROTEIN 02-MAY-11 2LCM *TITLE NMR STRUCTURE OF S3-4 PEPTIDE *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: VOLTAGE-DEPENDENT N-TYPE CALCIUM CHANNEL SUBUNIT ALPHA-1B; *COMPND 3 CHAIN: A; *COMPND 4 FRAGMENT: S4 OF REPEAT III RESIDUES 1242-1269; *COMPND 5 SYNONYM: BRAIN CALCIUM CHANNEL III, BIII, CALCIUM CHANNEL, L TYPE, *COMPND 6 ALPHA-1 POLYPEPTIDE ISOFORM 5, VOLTAGE-GATED CALCIUM CHANNEL SUBUNIT *COMPND 7 ALPHA CAV2.2; *COMPND 8 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 SYNTHETIC: YES; *SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; *SOURCE 4 ORGANISM_COMMON: HUMAN; *SOURCE 5 ORGANISM_TAXID: 9606 *KEYWDS VOLTAGE SENSOR PEPTIDE, MEMBRANE PROTEIN *EXPDTA SOLUTION NMR *NUMMDL 20 *AUTHOR B.DOUZI, H.DARBON, M.DE WAAR *REVDAT 1 14-MAR-12 2LCM 0' save_