data_wwPDB_remediated_restraints_file_for_PDB_entry_2n09 # This wwPDB archive file contains, for PDB entry 2n09: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389-396. ####################### # Entry information # ####################### save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_2n09 _Entry.Title 'wwPDB remediated NMR restraints for PDB entry 2n09' _Entry.Version_type original _Entry.NMR_STAR_version 3.1.0.8 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details 'Contains the remediated restraint lists and coordinates for PDB entry 2n09' _Entry.PDB_coordinate_file_version 3.20 loop_ _Related_entries.Database_name _Related_entries.Database_accession_code _Related_entries.Relationship _Related_entries.Entry_ID PDB 2n09 'Master copy' rr_2n09 stop_ save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_2n09 _Assembly.ID 1 _Assembly.Name 2n09 _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'not present' _Assembly.Molecular_mass 1271.3482 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 'Short hydrophobic peptide with cyclic constraints' 1 $Short_hydrophobic_peptide_with_cyclic_constraints A . no . . . . . . rr_2n09 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save_Short_hydrophobic_peptide_with_cyclic_constraints _Entity.Sf_category entity _Entity.Sf_framecode Short_hydrophobic_peptide_with_cyclic_constraints _Entity.Entry_ID rr_2n09 _Entity.ID 1 _Entity.Name Short_hydrophobic_peptide_with_cyclic_constraints _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code HAEGTFTSDFFX _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer yes _Entity.Nstd_chirality yes _Entity.Nstd_linkage yes _Entity.Number_of_monomers 12 _Entity.Paramagnetic no _Entity.Thiol_state 'not present' _Entity.Parent_entity_ID 1 _Entity.Formula_weight 1271.3482 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . HIS . rr_2n09 1 2 . ABA . rr_2n09 1 3 . GLU . rr_2n09 1 4 . GLY . rr_2n09 1 5 . THR . rr_2n09 1 6 . PHE . rr_2n09 1 7 . THR . rr_2n09 1 8 . SER . rr_2n09 1 9 . ASP . rr_2n09 1 10 . PHE . rr_2n09 1 11 . PHE . rr_2n09 1 12 . NH2 . rr_2n09 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . HIS 1 1 rr_2n09 1 . ABA 2 2 rr_2n09 1 . GLU 3 3 rr_2n09 1 . GLY 4 4 rr_2n09 1 . THR 5 5 rr_2n09 1 . PHE 6 6 rr_2n09 1 . THR 7 7 rr_2n09 1 . SER 8 8 rr_2n09 1 . ASP 9 9 rr_2n09 1 . PHE 10 10 rr_2n09 1 . PHE 11 11 rr_2n09 1 . NH2 12 12 rr_2n09 1 stop_ save_ ################################# # Polymer residues and ligands # ################################# save_chem_comp_ABA _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_ABA _Chem_comp.Entry_ID rr_2n09 _Chem_comp.ID ABA _Chem_comp.Name 'ALPHA-AMINOBUTYRIC ACID' _Chem_comp.Type 'L-peptide linking' _Chem_comp.PDB_code ABA _Chem_comp.Std_deriv_one_letter_code A _Chem_comp.Std_deriv_three_letter_code Ala _Chem_comp.Std_deriv_PDB_code ALA _Chem_comp.Std_deriv_chem_comp_name ALANINE _Chem_comp.Formal_charge 0 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula 'C4 H7 N O' _Chem_comp.Formula_weight 85.1054 loop_ _Chem_comp_common_name.Name _Chem_comp_common_name.Type _Chem_comp_common_name.Entry_ID _Chem_comp_common_name.Comp_ID '(2R)-2-aminobutanoic acid' name rr_2n09 ABA stop_ save_ save_chem_comp_NH2 _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_NH2 _Chem_comp.Entry_ID rr_2n09 _Chem_comp.ID NH2 _Chem_comp.Name 'AMINO GROUP' _Chem_comp.Type non-polymer _Chem_comp.PDB_code NH2 _Chem_comp.Formal_charge 0 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula 'H2 N' _Chem_comp.Formula_weight 16.0225 save_ ############################## # Structure determinations # ############################## ########################## # Conformer statistics # ########################## save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_2n09 _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 10 save_ ########################### # Constraint Statistics # ########################### save_constraint_statistics _Constraint_stat_list.Sf_framecode constraint_statistics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_2n09 _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 2n09.mr . . 'MR format' 1 comment 'Not applicable' 'Not applicable' 0 rr_2n09 1 1 2n09.mr . . XPLOR/CNS 2 distance NOE simple 46 rr_2n09 1 1 2n09.mr . . XPLOR/CNS 3 distance 'hydrogen bond' simple 10 rr_2n09 1 1 2n09.mr . . 'MR format' 4 'nomenclature mapping' 'Not applicable' 'Not applicable' 0 rr_2n09 1 stop_ save_ save_CNS/XPLOR_distance_constraints_2 _Gen_dist_constraint_list.Sf_category general_distance_constraints _Gen_dist_constraint_list.Sf_framecode CNS/XPLOR_distance_constraints_2 _Gen_dist_constraint_list.Entry_ID rr_2n09 _Gen_dist_constraint_list.ID 1 _Gen_dist_constraint_list.Constraint_type NOE _Gen_dist_constraint_list.Details 'Generated by Wattos' _Gen_dist_constraint_list.Constraint_file_ID 1 _Gen_dist_constraint_list.Block_ID 2 loop_ _Gen_dist_constraint_software.Software_ID _Gen_dist_constraint_software.Software_label _Gen_dist_constraint_software.Method_ID _Gen_dist_constraint_software.Method_label _Gen_dist_constraint_software.Entry_ID _Gen_dist_constraint_software.Gen_dist_constraint_list_ID . . . . rr_2n09 1 stop_ loop_ _Gen_dist_constraint.ID _Gen_dist_constraint.Member_ID _Gen_dist_constraint.Member_logic_code _Gen_dist_constraint.Assembly_atom_ID_1 _Gen_dist_constraint.Entity_assembly_ID_1 _Gen_dist_constraint.Entity_ID_1 _Gen_dist_constraint.Comp_index_ID_1 _Gen_dist_constraint.Seq_ID_1 _Gen_dist_constraint.Comp_ID_1 _Gen_dist_constraint.Atom_ID_1 _Gen_dist_constraint.Atom_type_1 _Gen_dist_constraint.Atom_isotope_number_1 _Gen_dist_constraint.Resonance_ID_1 _Gen_dist_constraint.Assembly_atom_ID_2 _Gen_dist_constraint.Entity_assembly_ID_2 _Gen_dist_constraint.Entity_ID_2 _Gen_dist_constraint.Comp_index_ID_2 _Gen_dist_constraint.Seq_ID_2 _Gen_dist_constraint.Comp_ID_2 _Gen_dist_constraint.Atom_ID_2 _Gen_dist_constraint.Atom_type_2 _Gen_dist_constraint.Atom_isotope_number_2 _Gen_dist_constraint.Resonance_ID_2 _Gen_dist_constraint.Intensity_val _Gen_dist_constraint.Intensity_lower_val_err _Gen_dist_constraint.Intensity_upper_val_err _Gen_dist_constraint.Distance_val _Gen_dist_constraint.Distance_lower_bound_val _Gen_dist_constraint.Distance_upper_bound_val _Gen_dist_constraint.Contribution_fractional_val _Gen_dist_constraint.Spectral_peak_ID _Gen_dist_constraint.Spectral_peak_list_ID _Gen_dist_constraint.PDB_record_ID_1 _Gen_dist_constraint.PDB_model_num_1 _Gen_dist_constraint.PDB_strand_ID_1 _Gen_dist_constraint.PDB_ins_code_1 _Gen_dist_constraint.PDB_residue_no_1 _Gen_dist_constraint.PDB_residue_name_1 _Gen_dist_constraint.PDB_atom_name_1 _Gen_dist_constraint.PDB_record_ID_2 _Gen_dist_constraint.PDB_model_num_2 _Gen_dist_constraint.PDB_strand_ID_2 _Gen_dist_constraint.PDB_ins_code_2 _Gen_dist_constraint.PDB_residue_no_2 _Gen_dist_constraint.PDB_residue_name_2 _Gen_dist_constraint.PDB_atom_name_2 _Gen_dist_constraint.Auth_entity_assembly_ID_1 _Gen_dist_constraint.Auth_asym_ID_1 _Gen_dist_constraint.Auth_chain_ID_1 _Gen_dist_constraint.Auth_seq_ID_1 _Gen_dist_constraint.Auth_comp_ID_1 _Gen_dist_constraint.Auth_atom_ID_1 _Gen_dist_constraint.Auth_alt_ID_1 _Gen_dist_constraint.Auth_atom_name_1 _Gen_dist_constraint.Auth_entity_assembly_ID_2 _Gen_dist_constraint.Auth_asym_ID_2 _Gen_dist_constraint.Auth_chain_ID_2 _Gen_dist_constraint.Auth_seq_ID_2 _Gen_dist_constraint.Auth_comp_ID_2 _Gen_dist_constraint.Auth_atom_ID_2 _Gen_dist_constraint.Auth_alt_ID_2 _Gen_dist_constraint.Auth_atom_name_2 _Gen_dist_constraint.Entry_ID _Gen_dist_constraint.Gen_dist_constraint_list_ID 1 1 OR . 1 1 3 3 GLU H H . . . 1 1 2 2 ABA HB2 H . . . . . 0.0 0.0 6.0 . . . . . A . 3 GLU H . . A . 2 AIB HB2 . . . 3 . HN . . . . . 2 . HB* . . rr_2n09 1 1 2 OR . 1 1 3 3 GLU H H . . . 1 1 2 2 ABA HB3 H . . . . . 0.0 0.0 6.0 . . . . . A . 3 GLU H . . A . 2 AIB HB3 . . . 3 . HN . . . . . 2 . HB* . . rr_2n09 1 2 1 OR . 1 1 4 4 GLY H H . . . 1 1 2 2 ABA HB2 H . . . . . 0.0 0.0 6.0 . . . . . A . 4 GLY H . . A . 2 AIB HB2 . . . 4 . HN . . . . . 2 . HB* . . rr_2n09 1 2 2 OR . 1 1 2 2 ABA HB3 H . . . 1 1 4 4 GLY H H . . . . . 0.0 0.0 6.0 . . . . . A . 2 AIB HB3 . . A . 4 GLY H . . . 2 . HB* . . . . . 4 . HN . . rr_2n09 1 3 1 . . 1 1 4 4 GLY H H . . . 1 1 3 3 GLU HA H . . . . . 0.0 0.0 3.5 . . . . . A . 4 GLY H . . A . 3 GLU HA . . . 4 . HN . . . . . 3 . HA . . rr_2n09 1 4 1 . . 1 1 3 3 GLU HA H . . . 1 1 5 5 THR H H . . . . . 0.0 0.0 6.0 . . . . . A . 3 GLU HA . . A . 5 THR H . . . 3 . HA . . . . . 5 . HN . . rr_2n09 1 5 1 . . 1 1 4 4 GLY H H . . . 1 1 3 3 GLU HB2 H . . . . . 0.0 0.0 6.0 . . . . . A . 4 GLY H . . A . 3 GLU HB2 . . . 4 . HN . . . . . 3 . HB1 . . rr_2n09 1 6 1 . . 1 1 4 4 GLY H H . . . 1 1 3 3 GLU HB3 H . . . . . 0.0 0.0 6.0 . . . . . A . 4 GLY H . . A . 3 GLU HB3 . . . 4 . HN . . . . . 3 . HB2 . . rr_2n09 1 7 1 OR . 1 1 4 4 GLY H H . . . 1 1 3 3 GLU HG2 H . . . . . 0.0 0.0 6.0 . . . . . A . 4 GLY H . . A . 3 GLU HG2 . . . 4 . HN . . . . . 3 . HG* . . rr_2n09 1 7 2 OR . 1 1 4 4 GLY H H . . . 1 1 3 3 GLU HG3 H . . . . . 0.0 0.0 6.0 . . . . . A . 4 GLY H . . A . 3 GLU HG3 . . . 4 . HN . . . . . 3 . HG* . . rr_2n09 1 8 1 . . 1 1 5 5 THR H H . . . 1 1 4 4 GLY HA2 H . . . . . 0.0 0.0 3.5 . . . . . A . 5 THR H . . A . 4 GLY HA2 . . . 5 . HN . . . . . 4 . HA1 . . rr_2n09 1 9 1 . . 1 1 4 4 GLY H H . . . 1 1 5 5 THR H H . . . . . 0.0 0.0 5.0 . . . . . A . 4 GLY H . . A . 5 THR H . . . 4 . HN . . . . . 5 . HN . . rr_2n09 1 10 1 . . 1 1 5 5 THR HA H . . . 1 1 6 6 PHE H H . . . . . 0.0 0.0 2.7 . . . . . A . 5 THR HA . . A . 6 PHE H . . . 5 . HA . . . . . 6 . HN . . rr_2n09 1 11 1 . . 1 1 5 5 THR HA H . . . 1 1 7 7 THR H H . . . . . 0.0 0.0 5.0 . . . . . A . 5 THR HA . . A . 7 THR H . . . 5 . HA . . . . . 7 . HN . . rr_2n09 1 12 1 . . 1 1 5 5 THR H H . . . 1 1 6 6 PHE H H . . . . . 0.0 0.0 5.0 . . . . . A . 5 THR H . . A . 6 PHE H . . . 5 . HN . . . . . 6 . HN . . rr_2n09 1 13 1 . . 1 1 5 5 THR H H . . . 1 1 7 7 THR H H . . . . . 0.0 0.0 6.0 . . . . . A . 5 THR H . . A . 7 THR H . . . 5 . HN . . . . . 7 . HN . . rr_2n09 1 14 1 . . 1 1 6 6 PHE H H . . . 1 1 6 6 PHE HB2 H . . . . . 0.0 0.0 2.7 . . . . . A . 6 PHE H . . A . 6 PHE HB2 . . . 6 . HN . . . . . 6 . HB1 . . rr_2n09 1 15 1 . . 1 1 6 6 PHE H H . . . 1 1 6 6 PHE HB3 H . . . . . 0.0 0.0 5.0 . . . . . A . 6 PHE H . . A . 6 PHE HB3 . . . 6 . HN . . . . . 6 . HB2 . . rr_2n09 1 16 1 . . 1 1 7 7 THR H H . . . 1 1 6 6 PHE HB2 H . . . . . 0.0 0.0 3.5 . . . . . A . 7 THR H . . A . 6 PHE HB2 . . . 7 . HN . . . . . 6 . HB1 . . rr_2n09 1 17 1 . . 1 1 7 7 THR H H . . . 1 1 6 6 PHE HB3 H . . . . . 0.0 0.0 5.0 . . . . . A . 7 THR H . . A . 6 PHE HB3 . . . 7 . HN . . . . . 6 . HB2 . . rr_2n09 1 18 1 . . 1 1 6 6 PHE H H . . . 1 1 7 7 THR H H . . . . . 0.0 0.0 5.0 . . . . . A . 6 PHE H . . A . 7 THR H . . . 6 . HN . . . . . 7 . HN . . rr_2n09 1 19 1 . . 1 1 7 7 THR H H . . . 1 1 8 8 SER H H . . . . . 0.0 0.0 5.0 . . . . . A . 7 THR H . . A . 8 SER H . . . 7 . HN . . . . . 8 . HN . . rr_2n09 1 20 1 . . 1 1 8 8 SER HA H . . . 1 1 9 9 ASP H H . . . . . 0.0 0.0 6.0 . . . . . A . 8 SER HA . . A . 9 ASP H . . . 8 . HA . . . . . 9 . HN . . rr_2n09 1 21 1 . . 1 1 8 8 SER HA H . . . 1 1 10 10 PHE H H . . . . . 0.0 0.0 6.0 . . . . . A . 8 SER HA . . A . 10 PHE H . . . 8 . HA . . . . . 10 . HN . . rr_2n09 1 22 1 OR . 1 1 9 9 ASP H H . . . 1 1 8 8 SER HB2 H . . . . . 0.0 0.0 6.0 . . . . . A . 9 ASP H . . A . 8 SER HB2 . . . 9 . HN . . . . . 8 . HB* . . rr_2n09 1 22 2 OR . 1 1 9 9 ASP H H . . . 1 1 8 8 SER HB3 H . . . . . 0.0 0.0 6.0 . . . . . A . 9 ASP H . . A . 8 SER HB3 . . . 9 . HN . . . . . 8 . HB* . . rr_2n09 1 23 1 . . 1 1 8 8 SER H H . . . 1 1 9 9 ASP H H . . . . . 0.0 0.0 5.0 . . . . . A . 8 SER H . . A . 9 ASP H . . . 8 . HN . . . . . 9 . HN . . rr_2n09 1 24 1 . . 1 1 10 10 PHE H H . . . 1 1 9 9 ASP HA H . . . . . 0.0 0.0 5.0 . . . . . A . 10 PHE H . . A . 9 ASP HA . . . 10 . HN . . . . . 9 . HA . . rr_2n09 1 25 1 . . 1 1 9 9 ASP H H . . . 1 1 10 10 PHE H H . . . . . 0.0 0.0 5.0 . . . . . A . 9 ASP H . . A . 10 PHE H . . . 9 . HN . . . . . 10 . HN . . rr_2n09 1 26 1 . . 1 1 10 10 PHE HA H . . . 1 1 11 11 PHE H H . . . . . 0.0 0.0 5.0 . . . . . A . 10 PHE HA . . A . 11 PHE H . . . 10 . HA . . . . . 11 . HN . . rr_2n09 1 27 1 . . 1 1 10 10 PHE HA H . . . 1 1 10 10 PHE HB3 H . . . . . 0.0 0.0 5.0 . . . . . A . 10 PHE HA . . A . 10 PHE HB3 . . . 10 . HA . . . . . 10 . HB2 . . rr_2n09 1 28 1 OR . 1 1 10 10 PHE HA H . . . 1 1 9 9 ASP HB2 H . . . . . 0.0 0.0 6.0 . . . . . A . 10 PHE HA . . A . 9 ASP HB2 . . . 10 . HA . . . . . 9 . HB* . . rr_2n09 1 28 2 OR . 1 1 10 10 PHE HA H . . . 1 1 9 9 ASP HB3 H . . . . . 0.0 0.0 6.0 . . . . . A . 10 PHE HA . . A . 9 ASP HB3 . . . 10 . HA . . . . . 9 . HB* . . rr_2n09 1 29 1 . . 1 1 10 10 PHE H H . . . 1 1 11 11 PHE H H . . . . . 0.0 0.0 5.0 . . . . . A . 10 PHE H . . A . 11 PHE H . . . 10 . HN . . . . . 11 . HN . . rr_2n09 1 30 1 . . 1 1 11 11 PHE HA H . . . 1 1 11 11 PHE HB2 H . . . . . 0.0 0.0 5.0 . . . . . A . 11 PHE HA . . A . 11 PHE HB2 . . . 11 . HA . . . . . 11 . HB1 . . rr_2n09 1 31 1 . . 1 1 11 11 PHE HA H . . . 1 1 11 11 PHE HB3 H . . . . . 0.0 0.0 6.0 . . . . . A . 11 PHE HA . . A . 11 PHE HB3 . . . 11 . HA . . . . . 11 . HB2 . . rr_2n09 1 32 1 . . 1 1 11 11 PHE HA H . . . 1 1 11 11 PHE QD H . . . . . 0.0 0.0 6.0 . . . . . A . 11 PHE HA . . A . 11 PHE QD . . . 11 . HA . . . . . 11 . HD* . . rr_2n09 1 33 1 OR . 1 1 11 11 PHE QD H . . . 1 1 11 11 PHE HB2 H . . . . . 0.0 0.0 5.0 . . . . . A . 11 PHE QD . . A . 11 PHE HB2 . . . 11 . HD* . . . . . 11 . HB* . . rr_2n09 1 33 2 OR . 1 1 11 11 PHE QD H . . . 1 1 11 11 PHE HB3 H . . . . . 0.0 0.0 5.0 . . . . . A . 11 PHE QD . . A . 11 PHE HB3 . . . 11 . HD* . . . . . 11 . HB* . . rr_2n09 1 stop_ loop_ _Gen_dist_constraint_comment_org.ID _Gen_dist_constraint_comment_org.Comment_text _Gen_dist_constraint_comment_org.Comment_begin_line _Gen_dist_constraint_comment_org.Comment_begin_column _Gen_dist_constraint_comment_org.Comment_end_line _Gen_dist_constraint_comment_org.Comment_end_column _Gen_dist_constraint_comment_org.Entry_ID _Gen_dist_constraint_comment_org.Gen_dist_constraint_list_ID 1 ; DapARA-NH2 cyclic NOE Assignment Table (from visual inspection) H A E G T F T S D F F NH2 7(S) 6-5(M) 4,3 (W) and 2,1 (vW) H1 ; 1 1 5 4 rr_2n09 1 2 (7)s 6 74 6 80 rr_2n09 1 3 (4)w 9 74 9 80 rr_2n09 1 4 ; (4)w A2 ; 10 75 12 4 rr_2n09 1 5 (2)vw 13 75 13 82 rr_2n09 1 6 '(6)m + 1.0 corr' 15 75 15 92 rr_2n09 1 7 '(4)w + 1.0 corr' 16 75 16 92 rr_2n09 1 8 ; (5)w + 1.0 corr E3 ; 18 75 21 4 rr_2n09 1 9 (8)m 22 76 22 82 rr_2n09 1 10 '(3) w' 23 76 23 83 rr_2n09 1 11 (2)vw 24 76 24 83 rr_2n09 1 12 (2)vw 25 76 25 83 rr_2n09 1 13 ; (2)vw G4 ; 26 76 29 4 rr_2n09 1 14 (7)m 30 80 30 86 rr_2n09 1 15 ; (3)w T5 ; 31 79 33 4 rr_2n09 1 16 (7)s 34 79 34 85 rr_2n09 1 17 (3)w 35 79 35 85 rr_2n09 1 18 '(3)w + corr' 36 80 36 93 rr_2n09 1 19 (3)w 37 79 37 85 rr_2n09 1 20 ; (2)w F6 ; 38 79 40 4 rr_2n09 1 21 (7)s 41 80 41 86 rr_2n09 1 22 (4)w 42 80 42 86 rr_2n09 1 23 (6)m 43 79 43 85 rr_2n09 1 24 '(3 w' 44 79 44 85 rr_2n09 1 25 (1)vw 45 80 45 87 rr_2n09 1 26 (3)w 46 78 46 84 rr_2n09 1 27 ; (1)vw T7 ; 47 80 49 4 rr_2n09 1 28 (1)vw 50 80 50 87 rr_2n09 1 29 (3)w 51 80 51 86 rr_2n09 1 30 (2)vw 52 80 52 87 rr_2n09 1 31 ; (3)w S8 ; 53 79 56 4 rr_2n09 1 32 (2)vw 57 79 57 86 rr_2n09 1 33 (2)vw 58 79 58 87 rr_2n09 1 34 '(2 v w' 59 79 59 87 rr_2n09 1 35 ; (4 w D9 ; 60 78 62 4 rr_2n09 1 36 (3)w 63 79 63 85 rr_2n09 1 37 ; (4)w F10 ; 64 79 68 5 rr_2n09 1 38 (4)w 69 79 69 85 rr_2n09 1 39 (3)w 70 80 70 86 rr_2n09 1 40 (2)vw 71 79 71 86 rr_2n09 1 41 ; (3)w F11 ; 72 79 75 5 rr_2n09 1 42 (4)w 76 79 76 86 rr_2n09 1 43 (3)w 77 79 77 85 rr_2n09 1 44 (3)w 78 80 78 87 rr_2n09 1 45 (2)vw 79 80 79 87 rr_2n09 1 46 (4)w 80 80 80 86 rr_2n09 1 47 (4)w 81 81 81 87 rr_2n09 1 stop_ loop_ _Gen_dist_constraint_conv_err.ID _Gen_dist_constraint_conv_err.Gen_dist_constraint_parse_file_ID _Gen_dist_constraint_conv_err.Parse_file_constraint_ID _Gen_dist_constraint_conv_err.Conv_error_type _Gen_dist_constraint_conv_err.Conv_error_note _Gen_dist_constraint_conv_err.Entry_ID _Gen_dist_constraint_conv_err.Gen_dist_constraint_list_ID 1 2 1 1 "Not handling restraint 1, item 1, resonance(s) ' .2.HN' (nmrStar names) not linked" rr_2n09 1 2 2 2 1 "Not handling restraint 2, item 1, resonance(s) ' .2.HN' (nmrStar names) not linked" rr_2n09 1 3 2 3 1 "Not handling restraint 3, item 1, resonance(s) ' .2.HD2' (nmrStar names) not linked" rr_2n09 1 4 2 4 1 "Not handling restraint 4, item 1, resonance(s) ' .2.HN' (nmrStar names) not linked" rr_2n09 1 5 2 5 1 "Not handling restraint 5, item 1, resonance(s) ' .2.HN' (nmrStar names) not linked" rr_2n09 1 6 2 5 1 "Not handling restraint 5, item 1, resonance(s) ' .2.HN' (nmrStar names) not linked" rr_2n09 1 7 2 17 1 "Not handling restraint 17, item 1, resonance(s) ' .5.HG2' (nmrStar names) not linked" rr_2n09 1 8 2 24 1 "Not handling restraint 24, item 1, resonance(s) ' .5.HD2' (nmrStar names) not linked" rr_2n09 1 9 2 26 1 "Not handling restraint 26, item 1, resonance(s) ' .7.HG2' (nmrStar names) not linked" rr_2n09 1 10 2 27 1 "Not handling restraint 27, item 1, resonance(s) ' .11.HD' (nmrStar names) not linked" rr_2n09 1 11 2 28 1 "Not handling restraint 28, item 1, resonance(s) ' .10.HD' (nmrStar names) not linked" rr_2n09 1 12 2 29 1 "Not handling restraint 29, item 1, resonance(s) ' .7.HG2' (nmrStar names) not linked" rr_2n09 1 13 2 41 1 "Not handling restraint 41, item 1, resonance(s) ' .11.H1' (nmrStar names) not linked" rr_2n09 1 14 2 42 1 "Not handling restraint 42, item 1, resonance(s) ' .11.H2' (nmrStar names) not linked" rr_2n09 1 stop_ save_ save_CNS/XPLOR_distance_constraints_3 _Gen_dist_constraint_list.Sf_category general_distance_constraints _Gen_dist_constraint_list.Sf_framecode CNS/XPLOR_distance_constraints_3 _Gen_dist_constraint_list.Entry_ID rr_2n09 _Gen_dist_constraint_list.ID 2 _Gen_dist_constraint_list.Constraint_type 'hydrogen bond' _Gen_dist_constraint_list.Details 'Generated by Wattos' _Gen_dist_constraint_list.Constraint_file_ID 1 _Gen_dist_constraint_list.Block_ID 3 loop_ _Gen_dist_constraint_software.Software_ID _Gen_dist_constraint_software.Software_label _Gen_dist_constraint_software.Method_ID _Gen_dist_constraint_software.Method_label _Gen_dist_constraint_software.Entry_ID _Gen_dist_constraint_software.Gen_dist_constraint_list_ID . . . . rr_2n09 2 stop_ loop_ _Gen_dist_constraint.ID _Gen_dist_constraint.Member_ID _Gen_dist_constraint.Member_logic_code _Gen_dist_constraint.Assembly_atom_ID_1 _Gen_dist_constraint.Entity_assembly_ID_1 _Gen_dist_constraint.Entity_ID_1 _Gen_dist_constraint.Comp_index_ID_1 _Gen_dist_constraint.Seq_ID_1 _Gen_dist_constraint.Comp_ID_1 _Gen_dist_constraint.Atom_ID_1 _Gen_dist_constraint.Atom_type_1 _Gen_dist_constraint.Atom_isotope_number_1 _Gen_dist_constraint.Resonance_ID_1 _Gen_dist_constraint.Assembly_atom_ID_2 _Gen_dist_constraint.Entity_assembly_ID_2 _Gen_dist_constraint.Entity_ID_2 _Gen_dist_constraint.Comp_index_ID_2 _Gen_dist_constraint.Seq_ID_2 _Gen_dist_constraint.Comp_ID_2 _Gen_dist_constraint.Atom_ID_2 _Gen_dist_constraint.Atom_type_2 _Gen_dist_constraint.Atom_isotope_number_2 _Gen_dist_constraint.Resonance_ID_2 _Gen_dist_constraint.Intensity_val _Gen_dist_constraint.Intensity_lower_val_err _Gen_dist_constraint.Intensity_upper_val_err _Gen_dist_constraint.Distance_val _Gen_dist_constraint.Distance_lower_bound_val _Gen_dist_constraint.Distance_upper_bound_val _Gen_dist_constraint.Contribution_fractional_val _Gen_dist_constraint.Spectral_peak_ID _Gen_dist_constraint.Spectral_peak_list_ID _Gen_dist_constraint.PDB_record_ID_1 _Gen_dist_constraint.PDB_model_num_1 _Gen_dist_constraint.PDB_strand_ID_1 _Gen_dist_constraint.PDB_ins_code_1 _Gen_dist_constraint.PDB_residue_no_1 _Gen_dist_constraint.PDB_residue_name_1 _Gen_dist_constraint.PDB_atom_name_1 _Gen_dist_constraint.PDB_record_ID_2 _Gen_dist_constraint.PDB_model_num_2 _Gen_dist_constraint.PDB_strand_ID_2 _Gen_dist_constraint.PDB_ins_code_2 _Gen_dist_constraint.PDB_residue_no_2 _Gen_dist_constraint.PDB_residue_name_2 _Gen_dist_constraint.PDB_atom_name_2 _Gen_dist_constraint.Auth_entity_assembly_ID_1 _Gen_dist_constraint.Auth_asym_ID_1 _Gen_dist_constraint.Auth_chain_ID_1 _Gen_dist_constraint.Auth_seq_ID_1 _Gen_dist_constraint.Auth_comp_ID_1 _Gen_dist_constraint.Auth_atom_ID_1 _Gen_dist_constraint.Auth_alt_ID_1 _Gen_dist_constraint.Auth_atom_name_1 _Gen_dist_constraint.Auth_entity_assembly_ID_2 _Gen_dist_constraint.Auth_asym_ID_2 _Gen_dist_constraint.Auth_chain_ID_2 _Gen_dist_constraint.Auth_seq_ID_2 _Gen_dist_constraint.Auth_comp_ID_2 _Gen_dist_constraint.Auth_atom_ID_2 _Gen_dist_constraint.Auth_alt_ID_2 _Gen_dist_constraint.Auth_atom_name_2 _Gen_dist_constraint.Entry_ID _Gen_dist_constraint.Gen_dist_constraint_list_ID 1 1 . . 1 1 4 4 GLY H H . . . 1 1 1 1 HIS O O . . . . . 1.88 1.58 2.3 . . . . . A . 4 GLY H . . A . 1 HIS O . . . 4 . HN . . . . . 1 . O . . rr_2n09 2 2 1 . . 1 1 1 1 HIS O O . . . 1 1 4 4 GLY N N . . . . . 2.88 2.58 3.3 . . . . . A . 1 HIS O . . A . 4 GLY N . . . 1 . O . . . . . 4 . N . . rr_2n09 2 3 1 . . 1 1 5 5 THR H H . . . 1 1 2 2 ABA O O . . . . . 1.88 1.58 2.3 . . . . . A . 5 THR H . . A . 2 AIB O . . . 5 . HN . . . . . 2 . O . . rr_2n09 2 4 1 . . 1 1 2 2 ABA O O . . . 1 1 5 5 THR N N . . . . . 2.88 2.58 3.3 . . . . . A . 2 AIB O . . A . 5 THR N . . . 2 . O . . . . . 5 . N . . rr_2n09 2 5 1 . . 1 1 9 9 ASP H H . . . 1 1 5 5 THR O O . . . . . 1.88 1.58 2.3 . . . . . A . 9 ASP H . . A . 5 THR O . . . 9 . HN . . . . . 5 . O . . rr_2n09 2 6 1 . . 1 1 5 5 THR O O . . . 1 1 9 9 ASP N N . . . . . 2.88 2.58 3.3 . . . . . A . 5 THR O . . A . 9 ASP N . . . 5 . O . . . . . 9 . N . . rr_2n09 2 7 1 . . 1 1 8 8 SER H H . . . 1 1 4 4 GLY O O . . . . . 1.88 1.58 2.3 . . . . . A . 8 SER H . . A . 4 GLY O . . . 8 . HN . . . . . 4 . O . . rr_2n09 2 8 1 . . 1 1 4 4 GLY O O . . . 1 1 8 8 SER N N . . . . . 2.88 2.58 3.3 . . . . . A . 4 GLY O . . A . 8 SER N . . . 4 . O . . . . . 8 . N . . rr_2n09 2 9 1 . . 1 1 10 10 PHE H H . . . 1 1 6 6 PHE O O . . . . . 1.88 1.58 2.3 . . . . . A . 10 PHE H . . A . 6 PHE O . . . 10 . HN . . . . . 6 . O . . rr_2n09 2 10 1 . . 1 1 6 6 PHE O O . . . 1 1 10 10 PHE N N . . . . . 2.88 2.58 3.3 . . . . . A . 6 PHE O . . A . 10 PHE N . . . 6 . O . . . . . 10 . N . . rr_2n09 2 stop_ loop_ _Gen_dist_constraint_comment_org.ID _Gen_dist_constraint_comment_org.Comment_text _Gen_dist_constraint_comment_org.Comment_begin_line _Gen_dist_constraint_comment_org.Comment_begin_column _Gen_dist_constraint_comment_org.Comment_end_line _Gen_dist_constraint_comment_org.Comment_end_column _Gen_dist_constraint_comment_org.Entry_ID _Gen_dist_constraint_comment_org.Gen_dist_constraint_list_ID 1 H-Bonds 1 1 1 9 rr_2n09 2 2 ; assign (resid 7 and name O )(resid 11 and name HN ) 1.88 0.3 0.42 assign (resid 7 and name O )(resid 11 and name N ) 2.88 0.3 0.42 ; 18 1 19 76 rr_2n09 2 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2n09 _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details 'Generated by Wattos' _Org_constr_file_comment.Comment '*HEADER DE NOVO PROTEIN 04-MAR-15 2N09 *TITLE NMR STRUCTURE OF A SHORT HYDROPHOBIC 11MER PEPTIDE IN DMSO-D6/H2O *TITLE 2 (1:3) SOLUTION *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: SHORT HYDROPHOBIC PEPTIDE WITH CYCLIC CONSTRAINTS; *COMPND 3 CHAIN: A; *COMPND 4 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 SYNTHETIC: YES *KEYWDS HYDROPHOBIC PEPTIDE, GLP-1R AGONIST, DE NOVO PROTEIN *EXPDTA SOLUTION NMR *NUMMDL 10 *AUTHOR H.N.HOANG, K.SONG, T.A.HILL, D.R.DERKSEN, D.J.EDMONDS, W.M.KOK, *AUTHOR 2 C.LIMBERAKIS, S.LIRAS, P.M.LORIA, V.MASCITTI, A.M.MATHIOWETZ, *AUTHOR 3 J.M.MITCHELL, D.W.PIOTROWSKI, D.A.PRICE, R.V.STANTON, J.Y.SUEN, *AUTHOR 4 J.M.WITHKA, D.A.GRIFFITH, D.P.FAIRLIE *REVDAT 1 15-APR-15 2N09 0' save_