data_wwPDB_remediated_restraints_file_for_PDB_entry_2rq4 # This wwPDB archive file contains, for PDB entry 2rq4: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_2rq4 _Entry.Title "wwPDB remediated NMR restraints for PDB entry 2rq4" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 2rq4" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_2rq4 _Assembly.ID 1 _Assembly.Name 2rq4 _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 12255.8031 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "CUG BP and ETR 3 like factor 1" 1 $CUG_BP__and_ETR_3_like_factor_1 A . no . . . . . . rr_2rq4 1 stop_ save_ save_CUG_BP__and_ETR_3_like_factor_1 _Entity.Sf_category entity _Entity.Sf_framecode CUG_BP__and_ETR_3_like_factor_1 _Entity.Entry_ID rr_2rq4 _Entity.ID 1 _Entity.Name CUG_BP__and_ETR_3_like_factor_1 _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; GSSGSSGLTQQSIGAAGSQK EGPEGANLFIYHLPQEFGDQ DLLQMFMPFGNVVSAKVFID KQTNLSKCFGFVSYDNPVSA QAAIQSMNGFQIGMKRLKVQ LKRSKNDSKSGPSSG ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 115 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 12255.8031 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . GLY . rr_2rq4 1 2 . SER . rr_2rq4 1 3 . SER . rr_2rq4 1 4 . GLY . rr_2rq4 1 5 . SER . rr_2rq4 1 6 . SER . rr_2rq4 1 7 . GLY . rr_2rq4 1 8 . LEU . rr_2rq4 1 9 . THR . rr_2rq4 1 10 . GLN . rr_2rq4 1 11 . GLN . rr_2rq4 1 12 . SER . rr_2rq4 1 13 . ILE . rr_2rq4 1 14 . GLY . rr_2rq4 1 15 . ALA . rr_2rq4 1 16 . ALA . rr_2rq4 1 17 . GLY . rr_2rq4 1 18 . SER . rr_2rq4 1 19 . GLN . rr_2rq4 1 20 . LYS . rr_2rq4 1 21 . GLU . rr_2rq4 1 22 . GLY . rr_2rq4 1 23 . PRO . rr_2rq4 1 24 . GLU . rr_2rq4 1 25 . GLY . rr_2rq4 1 26 . ALA . rr_2rq4 1 27 . ASN . rr_2rq4 1 28 . LEU . rr_2rq4 1 29 . PHE . rr_2rq4 1 30 . ILE . rr_2rq4 1 31 . TYR . rr_2rq4 1 32 . HIS . rr_2rq4 1 33 . LEU . rr_2rq4 1 34 . PRO . rr_2rq4 1 35 . GLN . rr_2rq4 1 36 . GLU . rr_2rq4 1 37 . PHE . rr_2rq4 1 38 . GLY . rr_2rq4 1 39 . ASP . rr_2rq4 1 40 . GLN . rr_2rq4 1 41 . ASP . rr_2rq4 1 42 . LEU . rr_2rq4 1 43 . LEU . rr_2rq4 1 44 . GLN . rr_2rq4 1 45 . MET . rr_2rq4 1 46 . PHE . rr_2rq4 1 47 . MET . rr_2rq4 1 48 . PRO . rr_2rq4 1 49 . PHE . rr_2rq4 1 50 . GLY . rr_2rq4 1 51 . ASN . rr_2rq4 1 52 . VAL . rr_2rq4 1 53 . VAL . rr_2rq4 1 54 . SER . rr_2rq4 1 55 . ALA . rr_2rq4 1 56 . LYS . rr_2rq4 1 57 . VAL . rr_2rq4 1 58 . PHE . rr_2rq4 1 59 . ILE . rr_2rq4 1 60 . ASP . rr_2rq4 1 61 . LYS . rr_2rq4 1 62 . GLN . rr_2rq4 1 63 . THR . rr_2rq4 1 64 . ASN . rr_2rq4 1 65 . LEU . rr_2rq4 1 66 . SER . rr_2rq4 1 67 . LYS . rr_2rq4 1 68 . CYS . rr_2rq4 1 69 . PHE . rr_2rq4 1 70 . GLY . rr_2rq4 1 71 . PHE . rr_2rq4 1 72 . VAL . rr_2rq4 1 73 . SER . rr_2rq4 1 74 . TYR . rr_2rq4 1 75 . ASP . rr_2rq4 1 76 . ASN . rr_2rq4 1 77 . PRO . rr_2rq4 1 78 . VAL . rr_2rq4 1 79 . SER . rr_2rq4 1 80 . ALA . rr_2rq4 1 81 . GLN . rr_2rq4 1 82 . ALA . rr_2rq4 1 83 . ALA . rr_2rq4 1 84 . ILE . rr_2rq4 1 85 . GLN . rr_2rq4 1 86 . SER . rr_2rq4 1 87 . MET . rr_2rq4 1 88 . ASN . rr_2rq4 1 89 . GLY . rr_2rq4 1 90 . PHE . rr_2rq4 1 91 . GLN . rr_2rq4 1 92 . ILE . rr_2rq4 1 93 . GLY . rr_2rq4 1 94 . MET . rr_2rq4 1 95 . LYS . rr_2rq4 1 96 . ARG . rr_2rq4 1 97 . LEU . rr_2rq4 1 98 . LYS . rr_2rq4 1 99 . VAL . rr_2rq4 1 100 . GLN . rr_2rq4 1 101 . LEU . rr_2rq4 1 102 . LYS . rr_2rq4 1 103 . ARG . rr_2rq4 1 104 . SER . rr_2rq4 1 105 . LYS . rr_2rq4 1 106 . ASN . rr_2rq4 1 107 . ASP . rr_2rq4 1 108 . SER . rr_2rq4 1 109 . LYS . rr_2rq4 1 110 . SER . rr_2rq4 1 111 . GLY . rr_2rq4 1 112 . PRO . rr_2rq4 1 113 . SER . rr_2rq4 1 114 . SER . rr_2rq4 1 115 . GLY . rr_2rq4 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . GLY 1 1 rr_2rq4 1 . SER 2 2 rr_2rq4 1 . SER 3 3 rr_2rq4 1 . GLY 4 4 rr_2rq4 1 . SER 5 5 rr_2rq4 1 . SER 6 6 rr_2rq4 1 . GLY 7 7 rr_2rq4 1 . LEU 8 8 rr_2rq4 1 . THR 9 9 rr_2rq4 1 . GLN 10 10 rr_2rq4 1 . GLN 11 11 rr_2rq4 1 . SER 12 12 rr_2rq4 1 . ILE 13 13 rr_2rq4 1 . GLY 14 14 rr_2rq4 1 . ALA 15 15 rr_2rq4 1 . ALA 16 16 rr_2rq4 1 . GLY 17 17 rr_2rq4 1 . SER 18 18 rr_2rq4 1 . GLN 19 19 rr_2rq4 1 . LYS 20 20 rr_2rq4 1 . GLU 21 21 rr_2rq4 1 . GLY 22 22 rr_2rq4 1 . PRO 23 23 rr_2rq4 1 . GLU 24 24 rr_2rq4 1 . GLY 25 25 rr_2rq4 1 . ALA 26 26 rr_2rq4 1 . ASN 27 27 rr_2rq4 1 . LEU 28 28 rr_2rq4 1 . PHE 29 29 rr_2rq4 1 . ILE 30 30 rr_2rq4 1 . TYR 31 31 rr_2rq4 1 . HIS 32 32 rr_2rq4 1 . LEU 33 33 rr_2rq4 1 . PRO 34 34 rr_2rq4 1 . GLN 35 35 rr_2rq4 1 . GLU 36 36 rr_2rq4 1 . PHE 37 37 rr_2rq4 1 . GLY 38 38 rr_2rq4 1 . ASP 39 39 rr_2rq4 1 . GLN 40 40 rr_2rq4 1 . ASP 41 41 rr_2rq4 1 . LEU 42 42 rr_2rq4 1 . LEU 43 43 rr_2rq4 1 . GLN 44 44 rr_2rq4 1 . MET 45 45 rr_2rq4 1 . PHE 46 46 rr_2rq4 1 . MET 47 47 rr_2rq4 1 . PRO 48 48 rr_2rq4 1 . PHE 49 49 rr_2rq4 1 . GLY 50 50 rr_2rq4 1 . ASN 51 51 rr_2rq4 1 . VAL 52 52 rr_2rq4 1 . VAL 53 53 rr_2rq4 1 . SER 54 54 rr_2rq4 1 . ALA 55 55 rr_2rq4 1 . LYS 56 56 rr_2rq4 1 . VAL 57 57 rr_2rq4 1 . PHE 58 58 rr_2rq4 1 . ILE 59 59 rr_2rq4 1 . ASP 60 60 rr_2rq4 1 . LYS 61 61 rr_2rq4 1 . GLN 62 62 rr_2rq4 1 . THR 63 63 rr_2rq4 1 . ASN 64 64 rr_2rq4 1 . LEU 65 65 rr_2rq4 1 . SER 66 66 rr_2rq4 1 . LYS 67 67 rr_2rq4 1 . CYS 68 68 rr_2rq4 1 . PHE 69 69 rr_2rq4 1 . GLY 70 70 rr_2rq4 1 . PHE 71 71 rr_2rq4 1 . VAL 72 72 rr_2rq4 1 . SER 73 73 rr_2rq4 1 . TYR 74 74 rr_2rq4 1 . ASP 75 75 rr_2rq4 1 . ASN 76 76 rr_2rq4 1 . PRO 77 77 rr_2rq4 1 . VAL 78 78 rr_2rq4 1 . SER 79 79 rr_2rq4 1 . ALA 80 80 rr_2rq4 1 . GLN 81 81 rr_2rq4 1 . ALA 82 82 rr_2rq4 1 . ALA 83 83 rr_2rq4 1 . ILE 84 84 rr_2rq4 1 . GLN 85 85 rr_2rq4 1 . SER 86 86 rr_2rq4 1 . MET 87 87 rr_2rq4 1 . ASN 88 88 rr_2rq4 1 . GLY 89 89 rr_2rq4 1 . PHE 90 90 rr_2rq4 1 . GLN 91 91 rr_2rq4 1 . ILE 92 92 rr_2rq4 1 . GLY 93 93 rr_2rq4 1 . MET 94 94 rr_2rq4 1 . LYS 95 95 rr_2rq4 1 . ARG 96 96 rr_2rq4 1 . LEU 97 97 rr_2rq4 1 . LYS 98 98 rr_2rq4 1 . VAL 99 99 rr_2rq4 1 . GLN 100 100 rr_2rq4 1 . LEU 101 101 rr_2rq4 1 . LYS 102 102 rr_2rq4 1 . ARG 103 103 rr_2rq4 1 . SER 104 104 rr_2rq4 1 . LYS 105 105 rr_2rq4 1 . ASN 106 106 rr_2rq4 1 . ASP 107 107 rr_2rq4 1 . SER 108 108 rr_2rq4 1 . LYS 109 109 rr_2rq4 1 . SER 110 110 rr_2rq4 1 . GLY 111 111 rr_2rq4 1 . PRO 112 112 rr_2rq4 1 . SER 113 113 rr_2rq4 1 . SER 114 114 rr_2rq4 1 . GLY 115 115 rr_2rq4 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_2rq4 _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 20 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_2rq4 _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 2rq4.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_2rq4 1 1 2rq4.mr . . AMBER 2 stereochemistry chirality "Not applicable" 0 rr_2rq4 1 1 2rq4.mr . . AMBER 3 "dihedral angle" "Not applicable" "Not applicable" 0 rr_2rq4 1 1 2rq4.mr . . AMBER 4 distance NOE simple 0 rr_2rq4 1 1 2rq4.mr . . AMBER 5 "dihedral angle" "Not applicable" "Not applicable" 0 rr_2rq4 1 1 2rq4.mr . . "MR format" 6 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_2rq4 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2rq4 _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER TRANSCRIPTION 19-JAN-09 2RQ4 *TITLE REFINEMENT OF RNA BINDING DOMAIN 3 IN CUG TRIPLET REPEAT *TITLE 2 RNA-BINDING PROTEIN 1 *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: CUG-BP- AND ETR-3-LIKE FACTOR 1; *COMPND 3 CHAIN: A; *COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; *COMPND 5 SYNONYM: CELF-1, BRUNO-LIKE PROTEIN 2, RNA-BINDING PROTEIN *COMPND 6 BRUNOL-2, CUG TRIPLET REPEAT RNA-BINDING PROTEIN 1, CUG- *COMPND 7 BP1, DEADENYLATION FACTOR CUG-BP, 50 KDA NUCLEAR *COMPND 8 POLYADENYLATED RNA-BINDING PROTEIN, EMBRYO DEADENYLATION *COMPND 9 ELEMENT-BINDING PROTEIN HOMOLOG, EDEN-BP HOMOLOG; *COMPND 10 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; *SOURCE 3 ORGANISM_COMMON: HUMAN; *SOURCE 4 ORGANISM_TAXID: 9606; *SOURCE 5 GENE: CUGBP1; *SOURCE 6 EXPRESSION_SYSTEM: E. COLI-CELL-FREE SYNTHESIS; *SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; *SOURCE 8 EXPRESSION_SYSTEM_VECTOR: P040329-21 *KEYWDS RRM DOMAIN, RBD, ACTIVATOR, ALTERNATIVE SPLICING, CYTOPLASM, *KEYWDS 2 MRNA PROCESSING, NUCLEUS, PHOSPHOPROTEIN, RNA-BINDING, *KEYWDS 3 TRANSCRIPTION, STRUCTURAL GENOMICS, NPPSFA, NATIONAL *KEYWDS 4 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, *KEYWDS 5 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI *EXPDTA SOLUTION NMR *NUMMDL 20 *AUTHOR K.TSUDA, K.KUWASAKO, M.TAKAHASHI, T.SOMEYA, M.INOUE, *AUTHOR 2 T.TERADA, N.KOBAYASHI, M.SHIROUZU, T.KIGAWA, P.GUNTERT, *AUTHOR 3 Y.MUTO, S.YOKOYAMA, RIKEN STRUCTURAL GENOMICS/PROTEOMICS *AUTHOR 4 INITIATIVE (RSGI) *REVDAT 1 04-AUG-09 2RQ4 0 ; save_