data_wwPDB_remediated_restraints_file_for_PDB_entry_2chj # This wwPDB archive file contains, for PDB entry 2chj: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, W Vranken, C Penkett, J Lin, CF Schulte, G Vuister, G Vriend, # JL Markley, EL Ulrich. BioMagResBank database `NMR Restraints Grid` with # curated sets of experimental NMR restraints for over 4,000 protein and nucleic # acid PDB entries. (in preparation) save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_2chj _Entry.Title "wwPDB remediated NMR restraints for PDB entry 2chj" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 2chj" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_2chj _Assembly.ID 1 _Assembly.Name 2chj _Assembly.Number_of_components 4 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "not present" _Assembly.Molecular_mass 8137.13464 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "5 D TP G LCGP G LCGP TP 3" 1 $5__D__TP_G_LCGP_G_LCGP_TP__3_ A . no . . . . . . rr_2chj 1 2 "5 D TP G LCGP G LCGP TP 3" 1 $5__D__TP_G_LCGP_G_LCGP_TP__3_ B . no . . . . . . rr_2chj 1 3 "5 D TP G LCGP G LCGP TP 3" 1 $5__D__TP_G_LCGP_G_LCGP_TP__3_ C . no . . . . . . rr_2chj 1 4 "5 D TP G LCGP G LCGP TP 3" 1 $5__D__TP_G_LCGP_G_LCGP_TP__3_ D . no . . . . . . rr_2chj 1 stop_ save_ save_5__D__TP_G_LCGP_G_LCGP_TP__3_ _Entity.Sf_category entity _Entity.Sf_framecode 5__D__TP_G_LCGP_G_LCGP_TP__3_ _Entity.Entry_ID rr_2chj _Entity.ID 1 _Entity.Name 5__D__TP_G_LCGP_G_LCGP_TP__3_ _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_chirality yes _Entity.Nstd_linkage yes _Entity.Nonpolymer_comp_ID DT _Entity.Nonpolymer_comp_label $chem_comp_DT _Entity.Number_of_monomers 6 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 1 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . DT . rr_2chj 1 2 . DG . rr_2chj 1 3 . LCG . rr_2chj 1 4 . DG . rr_2chj 1 5 . LCG . rr_2chj 1 6 . DT . rr_2chj 1 stop_ save_ save_chem_comp_LCG _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_LCG _Chem_comp.Entry_ID rr_2chj _Chem_comp.ID LCG _Chem_comp.Name "[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE" _Chem_comp.Type non-polymer _Chem_comp.PDB_code LCG _Chem_comp.Formal_charge 0 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic yes _Chem_comp.Formula "C11 H14 N5 O8 P" _Chem_comp.Formula_weight 375.23406 save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_2chj _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 20 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_2chj _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 2chj.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_2chj 1 1 2chj.mr . . MARDIGRAS/CORMA 2 distance NOE simple 0 rr_2chj 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2chj _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER NUCLEIC ACID 15-MAR-06 2CHJ *TITLE NMR STRUCTURE OF TGLGLT QUADRUPLEX *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: 5'-D(*TP*G LCGP*G LCGP*TP)-3'; *COMPND 3 CHAIN: A; *COMPND 4 OTHER_DETAILS: TELOMERIC SEQUENCE FROM O.NOVA *SOURCE MOL_ID: 1; *SOURCE 2 SYNTHETIC: YES *KEYWDS QUADRUPLEX, LNA, LOCKED NUCLEIC ACID *EXPDTA NMR, 20 STRUCTURES *AUTHOR J.T.NIELSEN,M.PETERSEN *REVDAT 1 15-MAR-06 2CHJ 0 ; save_