*HEADER RNA 11-JUL-06 2IXZ *TITLE SOLUTION STRUCTURE OF THE APICAL STEM-LOOP OF THE HUMAN *TITLE 2 HEPATITIS B VIRUS ENCAPSIDATION SIGNAL *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: 5'-R(*GP*CP*UP*GP*UP*GP*CP*CP)-3'; *COMPND 3 CHAIN: A; *COMPND 4 SYNONYM: PSEUDO TRILOOP OF APICAL STEM-LOOP *COMPND 5 FROM HEPATITISB VIRUS EPSILON; *COMPND 6 CHAIN: A *SOURCE MOL_ID: 1; *SOURCE 2 SYNTHETIC: YES; *KEYWDS HBV, RDC, RNA, PSEUDO TRILOOP *EXPDTA NMR, 12 STRUCTURES *AUTHOR S.FLODELL,M.PETERSEN,F.GIRARD,J.ZDUNEK,K.KIDD-LJUNGGREN, *AUTHOR 2 J.SCHLEUCHER,S.S.WIJMENGA *REVDAT 1 06-SEP-06 2IXZ 0 !# !# Watson-Crick base pairing restraints !# assign (segid PTL and resid 1 and name H21) (segid PTL and resid 8 and name O2) 1.92 0.18 0.18 assign (segid PTL and resid 1 and name H1) (segid PTL and resid 8 and name N3) 1.92 0.18 0.18 assign (segid PTL and resid 1 and name O6) (segid PTL and resid 8 and name H41) 1.92 0.18 0.18 assign (segid PTL and resid 6 and name H21) (segid PTL and resid 2 and name O2) 1.92 0.18 0.18 assign (segid PTL and resid 6 and name H1) (segid PTL and resid 2 and name N3) 1.92 0.18 0.18 assign (segid PTL and resid 6 and name O6) (segid PTL and resid 2 and name H41) 1.92 0.18 0.18 !# !# imino-imino restraint from NOESY spectrum in H2O !# assign (segid PTL and resid 1 and name H1) (segid PTL and resid 6 and name H1) 3.50 1.05 1.05 !# !# Distance restraints from NOESY spectra !# assign (segid PTL and resid 1 and name H8) (segid PTL and resid 1 and name H1') 4.5 1.5 1.5 assign (segid PTL and resid 1 and name H8) (segid PTL and resid 1 and name H2'1) 4.5 1.5 1.5 assign (segid PTL and resid 1 and name H8) (segid PTL and resid 1 and name H3') 4.5 1.5 1.5 assign (segid PTL and resid 2 and name H1') (segid PTL and resid 1 and name H1') 4.5 1.5 1.5 assign (segid PTL and resid 2 and name H5) (segid PTL and resid 1 and name H1') 4.5 1.5 1.5 assign (segid PTL and resid 2 and name H5) (segid PTL and resid 1 and name H8) 4.5 1.5 1.5 assign (segid PTL and resid 2 and name H6) (segid PTL and resid 1 and name H1') 4.5 1.5 1.5 assign (segid PTL and resid 2 and name H6) (segid PTL and resid 1 and name H2'1) 3.15 1.35 1.35 assign (segid PTL and resid 2 and name H6) (segid PTL and resid 1 and name H3') 3.15 1.35 1.35 assign (segid PTL and resid 2 and name H6) (segid PTL and resid 1 and name H8) 4.5 1.5 1.5 assign (segid PTL and resid 2 and name H5) (segid PTL and resid 2 and name H1') 4.5 1.5 1.5 assign (segid PTL and resid 2 and name H6) (segid PTL and resid 2 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 2 and name H6) (segid PTL and resid 2 and name H2'1) 2.4 0.6 0.6 assign (segid PTL and resid 3 and name H5) (segid PTL and resid 2 and name H5) 4.5 1.5 1.5 assign (segid PTL and resid 3 and name H6) (segid PTL and resid 2 and name H1') 5.0 2.0 2.0 assign (segid PTL and resid 3 and name H6) (segid PTL and resid 2 and name H2'1) 3.15 1.35 1.35 assign (segid PTL and resid 3 and name H6) (segid PTL and resid 2 and name H6) 4.5 1.5 1.5 assign (segid PTL and resid 3 and name H6) (segid PTL and resid 3 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 3 and name H6) (segid PTL and resid 3 and name H2'1) 2.4 0.6 0.6 assign (segid PTL and resid 3 and name H6) (segid PTL and resid 3 and name H3') 2.4 0.6 0.6 assign (segid PTL and resid 3 and name H6) (segid PTL and resid 3 and name H4') 3.15 1.35 1.35 assign (segid PTL and resid 4 and name H8) (segid PTL and resid 2 and name H1') 4.5 1.5 1.5 assign (segid PTL and resid 4 and name H8) (segid PTL and resid 2 and name H2'1) 4.5 1.5 1.5 assign (segid PTL and resid 4 and name H8) (segid PTL and resid 3 and name H1') 4.5 1.5 1.5 assign (segid PTL and resid 4 and name H8) (segid PTL and resid 3 and name H2'1) 4.5 1.5 1.5 assign (segid PTL and resid 4 and name H8) (segid PTL and resid 3 and name H3') 4.5 1.5 1.5 assign (segid PTL and resid 4 and name H8) (segid PTL and resid 3 and name H4') 4.5 1.5 1.5 assign (segid PTL and resid 4 and name H8) (segid PTL and resid 3 and name H6) 4.5 1.5 1.5 assign (segid PTL and resid 4 and name H2'1) (segid PTL and resid 4 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 4 and name H3') (segid PTL and resid 4 and name H1') 4.5 1.5 1.5 assign (segid PTL and resid 4 and name H4') (segid PTL and resid 4 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 4 and name H8) (segid PTL and resid 4 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 4 and name H8) (segid PTL and resid 4 and name H2'1) 3.15 1.35 1.35 assign (segid PTL and resid 4 and name H8) (segid PTL and resid 4 and name H3') 4.5 1.5 1.5 assign (segid PTL and resid 4 and name H8) (segid PTL and resid 4 and name H4') 5.0 2.0 2.0 assign (segid PTL and resid 4 and name H8) (segid PTL and resid 4 and name H5'*) 4.5 1.5 1.5 assign (segid PTL and resid 5 and name H4') (segid PTL and resid 4 and name H8) 4.5 1.5 1.5 assign (segid PTL and resid 5 and name H5) (segid PTL and resid 4 and name H8) 4.5 1.5 1.5 assign (segid PTL and resid 5 and name H6) (segid PTL and resid 4 and name H1') 4.5 1.5 1.5 assign (segid PTL and resid 5 and name H6) (segid PTL and resid 4 and name H2'1) 3.15 1.35 1.35 assign (segid PTL and resid 5 and name H6) (segid PTL and resid 4 and name H3') 3.15 1.35 1.35 assign (segid PTL and resid 5 and name H6) (segid PTL and resid 4 and name H4') 3.15 1.35 1.35 assign (segid PTL and resid 5 and name H6) (segid PTL and resid 4 and name H8) 4.5 1.5 1.5 assign (segid PTL and resid 5 and name H2'1) (segid PTL and resid 5 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 5 and name H3') (segid PTL and resid 5 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 5 and name H4') (segid PTL and resid 5 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 5 and name H4') (segid PTL and resid 5 and name H2'1) 3.15 1.35 1.35 assign (segid PTL and resid 5 and name H4') (segid PTL and resid 5 and name H3') 3.15 1.35 1.35 assign (segid PTL and resid 5 and name H5) (segid PTL and resid 5 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 5 and name H5'*) (segid PTL and resid 5 and name H4') 2.4 0.6 0.6 assign (segid PTL and resid 5 and name H6) (segid PTL and resid 5 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 5 and name H6) (segid PTL and resid 5 and name H2'1) 2.4 0.6 0.6 assign (segid PTL and resid 5 and name H6) (segid PTL and resid 5 and name H3') 3.15 1.35 1.35 assign (segid PTL and resid 5 and name H6) (segid PTL and resid 5 and name H4') 4.5 1.5 1.5 assign (segid PTL and resid 5 and name H6) (segid PTL and resid 5 and name H5'*) 3.15 1.35 1.35 assign (segid PTL and resid 6 and name H1') (segid PTL and resid 5 and name H4') 4.5 1.5 1.5 assign (segid PTL and resid 6 and name H2'1) (segid PTL and resid 5 and name H4') 4.5 1.5 1.5 assign (segid PTL and resid 6 and name H3') (segid PTL and resid 5 and name H4') 4.5 1.5 1.5 assign (segid PTL and resid 6 and name H4') (segid PTL and resid 5 and name H4') 3.15 1.35 1.35 assign (segid PTL and resid 6 and name H5'*) (segid PTL and resid 5 and name H4') 3.15 1.35 1.35 assign (segid PTL and resid 6 and name H8) (segid PTL and resid 5 and name H4') 4.5 1.5 1.5 assign (segid PTL and resid 6 and name H8) (segid PTL and resid 5 and name H5'*) 4.5 1.5 1.5 assign (segid PTL and resid 6 and name H2'1) (segid PTL and resid 6 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 6 and name H3') (segid PTL and resid 6 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 6 and name H3') (segid PTL and resid 6 and name H2'1) 2.4 0.6 0.6 assign (segid PTL and resid 6 and name H4') (segid PTL and resid 6 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 6 and name H4') (segid PTL and resid 6 and name H2'1) 3.15 1.35 1.35 assign (segid PTL and resid 6 and name H4') (segid PTL and resid 6 and name H3') 3.15 1.35 1.35 assign (segid PTL and resid 6 and name H5'*) (segid PTL and resid 6 and name H2'1) 3.15 1.35 1.35 assign (segid PTL and resid 6 and name H5'*) (segid PTL and resid 6 and name H3') 3.15 1.35 1.35 assign (segid PTL and resid 6 and name H8) (segid PTL and resid 6 and name H1') 4.5 1.5 1.5 assign (segid PTL and resid 6 and name H8) (segid PTL and resid 6 and name H2'1) 3.15 1.35 1.35 assign (segid PTL and resid 6 and name H8) (segid PTL and resid 6 and name H3') 3.15 1.35 1.35 assign (segid PTL and resid 6 and name H8) (segid PTL and resid 6 and name H4') 3.15 1.35 1.35 assign (segid PTL and resid 6 and name H8) (segid PTL and resid 6 and name H5'*) 3.15 1.35 1.35 assign (segid PTL and resid 7 and name H1') (segid PTL and resid 6 and name H1') 5.0 2.0 2.0 assign (segid PTL and resid 7 and name H4') (segid PTL and resid 6 and name H2'1) 3.15 1.35 1.35 assign (segid PTL and resid 7 and name H4') (segid PTL and resid 6 and name H3') 3.15 1.35 1.35 assign (segid PTL and resid 7 and name H5) (segid PTL and resid 6 and name H1') 5.0 2.0 2.0 assign (segid PTL and resid 7 and name H5'*) (segid PTL and resid 6 and name H2'1) 3.15 1.35 1.35 assign (segid PTL and resid 7 and name H5'*) (segid PTL and resid 6 and name H3') 3.9 2.1 2.1 assign (segid PTL and resid 7 and name H6) (segid PTL and resid 6 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 7 and name H2'1) (segid PTL and resid 7 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 7 and name H3') (segid PTL and resid 7 and name H1') 4.5 1.5 1.5 assign (segid PTL and resid 7 and name H4') (segid PTL and resid 7 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 7 and name H5) (segid PTL and resid 7 and name H1') 4.5 1.5 1.5 assign (segid PTL and resid 7 and name H6) (segid PTL and resid 7 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 7 and name H6) (segid PTL and resid 7 and name H2'1) 3.15 1.35 1.35 assign (segid PTL and resid 7 and name H6) (segid PTL and resid 7 and name H3') 3.15 1.35 1.35 assign (segid PTL and resid 7 and name H6) (segid PTL and resid 7 and name H4') 3.15 1.35 1.35 assign (segid PTL and resid 7 and name H6) (segid PTL and resid 7 and name H5'*) 3.15 1.35 1.35 assign (segid PTL and resid 8 and name H1') (segid PTL and resid 6 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 8 and name H1') (segid PTL and resid 6 and name H8) 4.5 1.5 1.5 assign (segid PTL and resid 8 and name H5) (segid PTL and resid 6 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 8 and name H5) (segid PTL and resid 6 and name H8) 3.15 1.35 1.35 assign (segid PTL and resid 8 and name H6) (segid PTL and resid 6 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 8 and name H6) (segid PTL and resid 6 and name H2'1) 3.15 1.35 1.35 assign (segid PTL and resid 8 and name H6) (segid PTL and resid 6 and name H3') 4.5 1.5 1.5 assign (segid PTL and resid 8 and name H6) (segid PTL and resid 6 and name H8) 4.5 1.5 1.5 assign (segid PTL and resid 8 and name H5) (segid PTL and resid 7 and name H1') 4.5 1.5 1.5 assign (segid PTL and resid 8 and name H5) (segid PTL and resid 7 and name H6) 4.5 1.5 1.5 assign (segid PTL and resid 8 and name H6) (segid PTL and resid 7 and name H3') 3.15 1.35 1.35 assign (segid PTL and resid 8 and name H5) (segid PTL and resid 8 and name H1') 4.5 1.5 1.5 assign (segid PTL and resid 8 and name H6) (segid PTL and resid 8 and name H1') 3.15 1.35 1.35 assign (segid PTL and resid 8 and name H6) (segid PTL and resid 8 and name H5'*) 3.15 1.35 1.35 !# !# BACKBONE DIHEDRAL RESTRAINTS !# !# RESIDUE 1 restraint dihedral assign (resid 1 and name C4') (resid 1 and name C3') (resid 1 and name O3') (resid 2 and name P) 500 -150 60 2 assign (resid 1 and name C3') (resid 1 and name O3') (resid 2 and name P) (resid 2 and name O5') 500 -75 60 2 !# RESIDUE 2 assign (resid 1 and name O3') (resid 2 and name P) (resid 2 and name O5') (resid 2 and name C5') 500 -60 60 2 assign (resid 2 and name P) (resid 2 and name O5') (resid 2 and name C5') (resid 2 and name C4') 500 180 60 2 assign (resid 2 and name O5') (resid 2 and name C5') (resid 2 and name C4') (resid 2 and name C3') 500 60 60 2 assign (resid 2 and name C4') (resid 2 and name C3') (resid 2 and name O3') (resid 3 and name P) 500 -150 60 2 assign (resid 2 and name C3') (resid 2 and name O3') (resid 3 and name P) (resid 3 and name O5') 500 -75 60 2 !# !# PUCKER RESTRAINTS !# !# RESIDUE 1 assign (resid 1 and name C5') (resid 1 and name C4') (resid 1 and name C3') (resid 1 and name O3') 500 85 10 2 !# RESIDUE 6 assign (resid 6 and name C5') (resid 6 and name C4') (resid 6 and name C3') (resid 6 and name O3') 500 85 10 2 !# RESIDUE 8 assign (resid 8 and name C5') (resid 8 and name C4') (resid 8 and name C3') (resid 8 and name O3') 500 85 10 2 !# RESIDUE 4 assign (resid 4 and name C5') (resid 4 and name C4') (resid 4 and name C3') (resid 4 and name O3') 500 135 10 2 !# RESIDUE 5 assign (resid 5 and name C5') (resid 5 and name C4') (resid 5 and name C3') (resid 5 and name O3') 500 135 10 2 !# !# CHI DIHEDRAL RESTRAINTS !# !# RESIDUE 1 assign (resid 1 and name O4') (resid 1 and name C1') (resid 1 and name N9) (resid 1 and name C4) 500 -160 20 2 !# RESIDUE 2 assign (resid 2 and name O4') (resid 2 and name C1') (resid 2 and name N1) (resid 2 and name C2) 500 -160 20 2 !# RESIDUE 3 assign (resid 3 and name O4') (resid 3 and name C1') (resid 3 and name N1) (resid 3 and name C2) 500 -160 20 2 !# RESIDUE 4 assign (resid 4 and name O4') (resid 4 and name C1') (resid 4 and name N9) (resid 4 and name C4) 500 -140 40 2 !# RESIDUE 5 assign (resid 5 and name O4') (resid 5 and name C1') (resid 5 and name N1) (resid 5 and name C2) 500 -140 40 2 !# RESIDUE 6 assign (resid 6 and name O4') (resid 6 and name C1') (resid 6 and name N9) (resid 6 and name C4) 500 -160 20 2 !# RESIDUE 7 assign (resid 7 and name O4') (resid 7 and name C1') (resid 7 and name N1) (resid 7 and name C2) 500 -160 20 2 !# RESIDUE 8 assign (resid 8 and name O4') (resid 8 and name C1') (resid 8 and name N1) (resid 8 and name C2) 500 -160 20 2 end