data_wwPDB_remediated_restraints_file_for_PDB_entry_6f3y # This wwPDB archive file contains, for PDB entry 6f3y: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389-396. ####################### # Entry information # ####################### save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_6f3y _Entry.Title 'wwPDB remediated NMR restraints for PDB entry 6f3y' _Entry.Version_type original _Entry.NMR_STAR_version 3.1.0.8 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details 'Contains the remediated restraint lists and coordinates for PDB entry 6f3y' _Entry.PDB_coordinate_file_version 3.20 loop_ _Related_entries.Database_name _Related_entries.Database_accession_code _Related_entries.Relationship _Related_entries.Entry_ID PDB 6f3y 'Master copy' rr_6f3y stop_ save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_6f3y _Assembly.ID 1 _Assembly.Name 6f3y _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'not present' _Assembly.Molecular_mass 1033.2151 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 'Kininogen 1' 1 $Kininogen_1 A . no . . . . . . rr_6f3y 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save_Kininogen_1 _Entity.Sf_category entity _Entity.Sf_framecode Kininogen_1 _Entity.Entry_ID rr_6f3y _Entity.ID 1 _Entity.Name Kininogen_1 _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code KRPPGFSPF _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 9 _Entity.Paramagnetic no _Entity.Thiol_state 'not present' _Entity.Parent_entity_ID 1 _Entity.Formula_weight 1033.2151 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . LYS . rr_6f3y 1 2 . ARG . rr_6f3y 1 3 . PRO . rr_6f3y 1 4 . PRO . rr_6f3y 1 5 . GLY . rr_6f3y 1 6 . PHE . rr_6f3y 1 7 . SER . rr_6f3y 1 8 . PRO . rr_6f3y 1 9 . PHE . rr_6f3y 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . LYS 1 1 rr_6f3y 1 . ARG 2 2 rr_6f3y 1 . PRO 3 3 rr_6f3y 1 . PRO 4 4 rr_6f3y 1 . GLY 5 5 rr_6f3y 1 . PHE 6 6 rr_6f3y 1 . SER 7 7 rr_6f3y 1 . PRO 8 8 rr_6f3y 1 . PHE 9 9 rr_6f3y 1 stop_ save_ ############################## # Structure determinations # ############################## ########################## # Conformer statistics # ########################## save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_6f3y _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 10 save_ ########################### # Constraint Statistics # ########################### save_constraint_statistics _Constraint_stat_list.Sf_framecode constraint_statistics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_6f3y _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 6f3y.mr . . 'MR format' 1 comment 'Not applicable' 'Not applicable' 0 rr_6f3y 1 1 6f3y.mr . . DYANA/DIANA 2 'dihedral angle' 'Not applicable' 'Not applicable' 11 rr_6f3y 1 1 6f3y.mr . . 'MR format' 3 'nomenclature mapping' 'Not applicable' 'Not applicable' 0 rr_6f3y 1 stop_ save_ save_DYANA/DIANA_dihedral_2 _Torsion_angle_constraint_list.Sf_category torsion_angle_constraints _Torsion_angle_constraint_list.Sf_framecode DYANA/DIANA_dihedral_2 _Torsion_angle_constraint_list.Entry_ID rr_6f3y _Torsion_angle_constraint_list.ID 1 _Torsion_angle_constraint_list.Details 'Generated by Wattos' _Torsion_angle_constraint_list.Constraint_file_ID 1 _Torsion_angle_constraint_list.Block_ID 2 loop_ _Torsion_angle_constraint_software.Software_ID _Torsion_angle_constraint_software.Software_label _Torsion_angle_constraint_software.Method_ID _Torsion_angle_constraint_software.Method_label _Torsion_angle_constraint_software.Entry_ID _Torsion_angle_constraint_software.Torsion_angle_constraint_list_ID . . . . rr_6f3y 1 stop_ loop_ _Torsion_angle_constraint.ID _Torsion_angle_constraint.Torsion_angle_name _Torsion_angle_constraint.Assembly_atom_ID_1 _Torsion_angle_constraint.Entity_assembly_ID_1 _Torsion_angle_constraint.Entity_ID_1 _Torsion_angle_constraint.Comp_index_ID_1 _Torsion_angle_constraint.Seq_ID_1 _Torsion_angle_constraint.Comp_ID_1 _Torsion_angle_constraint.Atom_ID_1 _Torsion_angle_constraint.Atom_type_1 _Torsion_angle_constraint.Resonance_ID_1 _Torsion_angle_constraint.Assembly_atom_ID_2 _Torsion_angle_constraint.Entity_assembly_ID_2 _Torsion_angle_constraint.Entity_ID_2 _Torsion_angle_constraint.Comp_index_ID_2 _Torsion_angle_constraint.Seq_ID_2 _Torsion_angle_constraint.Comp_ID_2 _Torsion_angle_constraint.Atom_ID_2 _Torsion_angle_constraint.Atom_type_2 _Torsion_angle_constraint.Resonance_ID_2 _Torsion_angle_constraint.Assembly_atom_ID_3 _Torsion_angle_constraint.Entity_assembly_ID_3 _Torsion_angle_constraint.Entity_ID_3 _Torsion_angle_constraint.Comp_index_ID_3 _Torsion_angle_constraint.Seq_ID_3 _Torsion_angle_constraint.Comp_ID_3 _Torsion_angle_constraint.Atom_ID_3 _Torsion_angle_constraint.Atom_type_3 _Torsion_angle_constraint.Resonance_ID_3 _Torsion_angle_constraint.Assembly_atom_ID_4 _Torsion_angle_constraint.Entity_assembly_ID_4 _Torsion_angle_constraint.Entity_ID_4 _Torsion_angle_constraint.Comp_index_ID_4 _Torsion_angle_constraint.Seq_ID_4 _Torsion_angle_constraint.Comp_ID_4 _Torsion_angle_constraint.Atom_ID_4 _Torsion_angle_constraint.Atom_type_4 _Torsion_angle_constraint.Resonance_ID_4 _Torsion_angle_constraint.Angle_lower_bound_val _Torsion_angle_constraint.Angle_upper_bound_val _Torsion_angle_constraint.Source_experiment_ID _Torsion_angle_constraint.PDB_record_ID_1 _Torsion_angle_constraint.PDB_model_num_1 _Torsion_angle_constraint.PDB_strand_ID_1 _Torsion_angle_constraint.PDB_ins_code_1 _Torsion_angle_constraint.PDB_residue_no_1 _Torsion_angle_constraint.PDB_residue_name_1 _Torsion_angle_constraint.PDB_atom_name_1 _Torsion_angle_constraint.PDB_record_ID_2 _Torsion_angle_constraint.PDB_model_num_2 _Torsion_angle_constraint.PDB_strand_ID_2 _Torsion_angle_constraint.PDB_ins_code_2 _Torsion_angle_constraint.PDB_residue_no_2 _Torsion_angle_constraint.PDB_residue_name_2 _Torsion_angle_constraint.PDB_atom_name_2 _Torsion_angle_constraint.PDB_record_ID_3 _Torsion_angle_constraint.PDB_model_num_3 _Torsion_angle_constraint.PDB_strand_ID_3 _Torsion_angle_constraint.PDB_ins_code_3 _Torsion_angle_constraint.PDB_residue_no_3 _Torsion_angle_constraint.PDB_residue_name_3 _Torsion_angle_constraint.PDB_atom_name_3 _Torsion_angle_constraint.PDB_record_ID_4 _Torsion_angle_constraint.PDB_model_num_4 _Torsion_angle_constraint.PDB_strand_ID_4 _Torsion_angle_constraint.PDB_ins_code_4 _Torsion_angle_constraint.PDB_residue_no_4 _Torsion_angle_constraint.PDB_residue_name_4 _Torsion_angle_constraint.PDB_atom_name_4 _Torsion_angle_constraint.Auth_entity_assembly_ID_1 _Torsion_angle_constraint.Auth_asym_ID_1 _Torsion_angle_constraint.Auth_chain_ID_1 _Torsion_angle_constraint.Auth_seq_ID_1 _Torsion_angle_constraint.Auth_comp_ID_1 _Torsion_angle_constraint.Auth_atom_ID_1 _Torsion_angle_constraint.Auth_alt_ID_1 _Torsion_angle_constraint.Auth_atom_name_1 _Torsion_angle_constraint.Auth_entity_assembly_ID_2 _Torsion_angle_constraint.Auth_asym_ID_2 _Torsion_angle_constraint.Auth_chain_ID_2 _Torsion_angle_constraint.Auth_seq_ID_2 _Torsion_angle_constraint.Auth_comp_ID_2 _Torsion_angle_constraint.Auth_atom_ID_2 _Torsion_angle_constraint.Auth_alt_ID_2 _Torsion_angle_constraint.Auth_atom_name_2 _Torsion_angle_constraint.Auth_entity_assembly_ID_3 _Torsion_angle_constraint.Auth_asym_ID_3 _Torsion_angle_constraint.Auth_chain_ID_3 _Torsion_angle_constraint.Auth_seq_ID_3 _Torsion_angle_constraint.Auth_comp_ID_3 _Torsion_angle_constraint.Auth_atom_ID_3 _Torsion_angle_constraint.Auth_alt_ID_3 _Torsion_angle_constraint.Auth_atom_name_3 _Torsion_angle_constraint.Auth_entity_assembly_ID_4 _Torsion_angle_constraint.Auth_asym_ID_4 _Torsion_angle_constraint.Auth_chain_ID_4 _Torsion_angle_constraint.Auth_seq_ID_4 _Torsion_angle_constraint.Auth_comp_ID_4 _Torsion_angle_constraint.Auth_atom_ID_4 _Torsion_angle_constraint.Auth_alt_ID_4 _Torsion_angle_constraint.Auth_atom_name_4 _Torsion_angle_constraint.Entry_ID _Torsion_angle_constraint.Torsion_angle_constraint_list_ID 1 PHI . 1 1 1 1 LYS C C . . 1 1 2 2 ARG N N . . 1 1 2 2 ARG CA C . . 1 1 2 2 ARG C C . -144.652 -90.678 . . . A . 1 LYS C . . A . 2 ARG N . . A . 2 ARG CA . . A . 2 ARG C . . . 2 ARG . . . . . . 2 ARG . . . . . . 2 ARG . . . . . . 2 ARG . . . rr_6f3y 1 2 PSI . 1 1 2 2 ARG N N . . 1 1 2 2 ARG CA C . . 1 1 2 2 ARG C C . . 1 1 3 3 PRO N N . 108.613 163.389 . . . A . 2 ARG N . . A . 2 ARG CA . . A . 2 ARG C . . A . 3 PRO N . . . 2 ARG . . . . . . 2 ARG . . . . . . 2 ARG . . . . . . 2 ARG . . . rr_6f3y 1 3 PSI . 1 1 3 3 PRO N N . . 1 1 3 3 PRO CA C . . 1 1 3 3 PRO C C . . 1 1 4 4 PRO N N . 136.740 162.844 . . . A . 3 PRO N . . A . 3 PRO CA . . A . 3 PRO C . . A . 4 PRO N . . . 3 PRO . . . . . . 3 PRO . . . . . . 3 PRO . . . . . . 3 PRO . . . rr_6f3y 1 4 PSI . 1 1 4 4 PRO N N . . 1 1 4 4 PRO CA C . . 1 1 4 4 PRO C C . . 1 1 5 5 GLY N N . 127.986 147.732 . . . A . 4 PRO N . . A . 4 PRO CA . . A . 4 PRO C . . A . 5 GLY N . . . 4 PRO . . . . . . 4 PRO . . . . . . 4 PRO . . . . . . 4 PRO . . . rr_6f3y 1 5 PHI . 1 1 4 4 PRO C C . . 1 1 5 5 GLY N N . . 1 1 5 5 GLY CA C . . 1 1 5 5 GLY C C . 82.029 104.157 . . . A . 4 PRO C . . A . 5 GLY N . . A . 5 GLY CA . . A . 5 GLY C . . . 5 GLY . . . . . . 5 GLY . . . . . . 5 GLY . . . . . . 5 GLY . . . rr_6f3y 1 6 PSI . 1 1 5 5 GLY N N . . 1 1 5 5 GLY CA C . . 1 1 5 5 GLY C C . . 1 1 6 6 PHE N N . -23.283 -4.891 . . . A . 5 GLY N . . A . 5 GLY CA . . A . 5 GLY C . . A . 6 PHE N . . . 5 GLY . . . . . . 5 GLY . . . . . . 5 GLY . . . . . . 5 GLY . . . rr_6f3y 1 7 PHI . 1 1 5 5 GLY C C . . 1 1 6 6 PHE N N . . 1 1 6 6 PHE CA C . . 1 1 6 6 PHE C C . -85.552 -59.230 . . . A . 5 GLY C . . A . 6 PHE N . . A . 6 PHE CA . . A . 6 PHE C . . . 6 PHE . . . . . . 6 PHE . . . . . . 6 PHE . . . . . . 6 PHE . . . rr_6f3y 1 8 PSI . 1 1 6 6 PHE N N . . 1 1 6 6 PHE CA C . . 1 1 6 6 PHE C C . . 1 1 7 7 SER N N . 130.452 154.500 . . . A . 6 PHE N . . A . 6 PHE CA . . A . 6 PHE C . . A . 7 SER N . . . 6 PHE . . . . . . 6 PHE . . . . . . 6 PHE . . . . . . 6 PHE . . . rr_6f3y 1 9 PHI . 1 1 6 6 PHE C C . . 1 1 7 7 SER N N . . 1 1 7 7 SER CA C . . 1 1 7 7 SER C C . -131.653 -85.921 . . . A . 6 PHE C . . A . 7 SER N . . A . 7 SER CA . . A . 7 SER C . . . 7 SER . . . . . . 7 SER . . . . . . 7 SER . . . . . . 7 SER . . . rr_6f3y 1 10 PSI . 1 1 7 7 SER N N . . 1 1 7 7 SER CA C . . 1 1 7 7 SER C C . . 1 1 8 8 PRO N N . 121.394 189.928 . . . A . 7 SER N . . A . 7 SER CA . . A . 7 SER C . . A . 8 PRO N . . . 7 SER . . . . . . 7 SER . . . . . . 7 SER . . . . . . 7 SER . . . rr_6f3y 1 11 PSI . 1 1 8 8 PRO N N . . 1 1 8 8 PRO CA C . . 1 1 8 8 PRO C C . . 1 1 9 9 PHE N N . 139.993 155.951 . . . A . 8 PRO N . . A . 8 PRO CA . . A . 8 PRO C . . A . 9 PHE N . . . 8 PRO . . . . . . 8 PRO . . . . . . 8 PRO . . . . . . 8 PRO . . . rr_6f3y 1 stop_ loop_ _TA_constraint_comment_org.ID _TA_constraint_comment_org.Comment_text _TA_constraint_comment_org.Comment_begin_line _TA_constraint_comment_org.Comment_begin_column _TA_constraint_comment_org.Comment_end_line _TA_constraint_comment_org.Comment_end_column _TA_constraint_comment_org.Entry_ID _TA_constraint_comment_org.Torsion_angle_constraint_list_ID 1 'Restraints file 1: DAKD_bound_tor.aco' 1 1 1 39 rr_6f3y 1 2 'Talos contraints =10 only' 2 1 2 26 rr_6f3y 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_6f3y _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details 'Generated by Wattos' _Org_constr_file_comment.Comment ; *HEADER MEMBRANE PROTEIN 29-NOV-17 6F3Y *TITLE BACKBONE STRUCTURE OF DES-ARG10-KALLIDIN (DAKD) PEPTIDE BOUND TO HUMAN *TITLE 2 BRADYKININ 1 RECEPTOR (B1R) DETERMINED BY DNP-ENHANCED MAS SSNMR *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: KININOGEN-1; *COMPND 3 CHAIN: A; *COMPND 4 SYNONYM: ALPHA-2-THIOL PROTEINASE INHIBITOR,FITZGERALD FACTOR,HIGH *COMPND 5 MOLECULAR WEIGHT KININOGEN,HMWK,WILLIAMS-FITZGERALD-FLAUJEAC FACTOR; *COMPND 6 ENGINEERED: YES; *COMPND 7 OTHER_DETAILS: DAKD PEPTIDE BOUND TO HUMAN B1R SYNONYMS: LYS-DES-ARG9 *COMPND 8 BRADYKININ *SOURCE MOL_ID: 1; *SOURCE 2 SYNTHETIC: YES; *SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; *SOURCE 4 ORGANISM_COMMON: HUMAN; *SOURCE 5 ORGANISM_TAXID: 9606; *SOURCE 6 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS *KEYWDS GPCR, DNP, MEMBRANE PROTEIN *EXPDTA SOLID-STATE NMR *NUMMDL 10 *AUTHOR J.MAO,G.KUENZE,L.JOEDICKE,J.MEILER,H.MICHEL,C.GLAUBITZ *REVDAT 1 10-JAN-18 6F3Y 0 ; save_