data_wwPDB_remediated_restraints_file_for_PDB_entry_6ux5 # This wwPDB archive file contains, for PDB entry 6ux5: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389-396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_6ux5 _Entry.Title 'wwPDB remediated NMR restraints for PDB entry 6ux5' _Entry.Version_type original _Entry.NMR_STAR_version 3.1.0.8 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details 'Contains the remediated restraint lists and coordinates for PDB entry 6ux5' _Entry.PDB_coordinate_file_version 3.20 loop_ _Related_entries.Database_name _Related_entries.Database_accession_code _Related_entries.Relationship _Related_entries.Entry_ID PDB 6ux5 'Master copy' rr_6ux5 stop_ save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_6ux5 _Assembly.ID 1 _Assembly.Name 6ux5 _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'all free' _Assembly.Molecular_mass 5653.1721 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 'U actitoxin Aeq5a' 1 $U_actitoxin_Aeq5a A . no . . . . . . rr_6ux5 1 stop_ save_ save_U_actitoxin_Aeq5a _Entity.Sf_category entity _Entity.Sf_framecode U_actitoxin_Aeq5a _Entity.Entry_ID rr_6ux5 _Entity.ID 1 _Entity.Name U_actitoxin_Aeq5a _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; SSTPDGTWVKCRHDCFTKYK SCQMSDSCHDEQSCHQCHVK HTDCVNTGCP ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 50 _Entity.Paramagnetic no _Entity.Thiol_state 'all free' _Entity.Parent_entity_ID 1 _Entity.Formula_weight 5653.1721 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . SER . rr_6ux5 1 2 . SER . rr_6ux5 1 3 . THR . rr_6ux5 1 4 . PRO . rr_6ux5 1 5 . ASP . rr_6ux5 1 6 . GLY . rr_6ux5 1 7 . THR . rr_6ux5 1 8 . TRP . rr_6ux5 1 9 . VAL . rr_6ux5 1 10 . LYS . rr_6ux5 1 11 . CYS . rr_6ux5 1 12 . ARG . rr_6ux5 1 13 . HIS . rr_6ux5 1 14 . ASP . rr_6ux5 1 15 . CYS . rr_6ux5 1 16 . PHE . rr_6ux5 1 17 . THR . rr_6ux5 1 18 . LYS . rr_6ux5 1 19 . TYR . rr_6ux5 1 20 . LYS . rr_6ux5 1 21 . SER . rr_6ux5 1 22 . CYS . rr_6ux5 1 23 . GLN . rr_6ux5 1 24 . MET . rr_6ux5 1 25 . SER . rr_6ux5 1 26 . ASP . rr_6ux5 1 27 . SER . rr_6ux5 1 28 . CYS . rr_6ux5 1 29 . HIS . rr_6ux5 1 30 . ASP . rr_6ux5 1 31 . GLU . rr_6ux5 1 32 . GLN . rr_6ux5 1 33 . SER . rr_6ux5 1 34 . CYS . rr_6ux5 1 35 . HIS . rr_6ux5 1 36 . GLN . rr_6ux5 1 37 . CYS . rr_6ux5 1 38 . HIS . rr_6ux5 1 39 . VAL . rr_6ux5 1 40 . LYS . rr_6ux5 1 41 . HIS . rr_6ux5 1 42 . THR . rr_6ux5 1 43 . ASP . rr_6ux5 1 44 . CYS . rr_6ux5 1 45 . VAL . rr_6ux5 1 46 . ASN . rr_6ux5 1 47 . THR . rr_6ux5 1 48 . GLY . rr_6ux5 1 49 . CYS . rr_6ux5 1 50 . PRO . rr_6ux5 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . SER 1 1 rr_6ux5 1 . SER 2 2 rr_6ux5 1 . THR 3 3 rr_6ux5 1 . PRO 4 4 rr_6ux5 1 . ASP 5 5 rr_6ux5 1 . GLY 6 6 rr_6ux5 1 . THR 7 7 rr_6ux5 1 . TRP 8 8 rr_6ux5 1 . VAL 9 9 rr_6ux5 1 . LYS 10 10 rr_6ux5 1 . CYS 11 11 rr_6ux5 1 . ARG 12 12 rr_6ux5 1 . HIS 13 13 rr_6ux5 1 . ASP 14 14 rr_6ux5 1 . CYS 15 15 rr_6ux5 1 . PHE 16 16 rr_6ux5 1 . THR 17 17 rr_6ux5 1 . LYS 18 18 rr_6ux5 1 . TYR 19 19 rr_6ux5 1 . LYS 20 20 rr_6ux5 1 . SER 21 21 rr_6ux5 1 . CYS 22 22 rr_6ux5 1 . GLN 23 23 rr_6ux5 1 . MET 24 24 rr_6ux5 1 . SER 25 25 rr_6ux5 1 . ASP 26 26 rr_6ux5 1 . SER 27 27 rr_6ux5 1 . CYS 28 28 rr_6ux5 1 . HIS 29 29 rr_6ux5 1 . ASP 30 30 rr_6ux5 1 . GLU 31 31 rr_6ux5 1 . GLN 32 32 rr_6ux5 1 . SER 33 33 rr_6ux5 1 . CYS 34 34 rr_6ux5 1 . HIS 35 35 rr_6ux5 1 . GLN 36 36 rr_6ux5 1 . CYS 37 37 rr_6ux5 1 . HIS 38 38 rr_6ux5 1 . VAL 39 39 rr_6ux5 1 . LYS 40 40 rr_6ux5 1 . HIS 41 41 rr_6ux5 1 . THR 42 42 rr_6ux5 1 . ASP 43 43 rr_6ux5 1 . CYS 44 44 rr_6ux5 1 . VAL 45 45 rr_6ux5 1 . ASN 46 46 rr_6ux5 1 . THR 47 47 rr_6ux5 1 . GLY 48 48 rr_6ux5 1 . CYS 49 49 rr_6ux5 1 . PRO 50 50 rr_6ux5 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_6ux5 _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 20 save_ save_constraint_statistics _Constraint_stat_list.Sf_framecode constraint_statistics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_6ux5 _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 6ux5.mr . . 'MR format' 1 comment 'Not applicable' 'Not applicable' 0 rr_6ux5 1 1 6ux5.mr . . XPLOR/CNS 2 'dihedral angle' 'Not applicable' 'Not applicable' 34 rr_6ux5 1 1 6ux5.mr . . 'MR format' 3 'nomenclature mapping' 'Not applicable' 'Not applicable' 0 rr_6ux5 1 stop_ save_ save_CNS/XPLOR_dihedral_2 _Torsion_angle_constraint_list.Sf_category torsion_angle_constraints _Torsion_angle_constraint_list.Sf_framecode CNS/XPLOR_dihedral_2 _Torsion_angle_constraint_list.Entry_ID rr_6ux5 _Torsion_angle_constraint_list.ID 1 _Torsion_angle_constraint_list.Details 'Generated by Wattos' _Torsion_angle_constraint_list.Constraint_file_ID 1 _Torsion_angle_constraint_list.Block_ID 2 loop_ _Torsion_angle_constraint_software.Software_ID _Torsion_angle_constraint_software.Software_label _Torsion_angle_constraint_software.Method_ID _Torsion_angle_constraint_software.Method_label _Torsion_angle_constraint_software.Entry_ID _Torsion_angle_constraint_software.Torsion_angle_constraint_list_ID . . . . rr_6ux5 1 stop_ loop_ _TA_constraint_parse_err.ID _TA_constraint_parse_err.Content _TA_constraint_parse_err.Begin_line _TA_constraint_parse_err.Begin_column _TA_constraint_parse_err.End_line _TA_constraint_parse_err.End_column _TA_constraint_parse_err.Entry_ID _TA_constraint_parse_err.Torsion_angle_constraint_list_ID 1 '# Restraints file 1: acro1chi.tbl' 1 1 1 33 rr_6ux5 1 stop_ loop_ _TA_constraint_comment_org.ID _TA_constraint_comment_org.Comment_text _TA_constraint_comment_org.Comment_begin_line _TA_constraint_comment_org.Comment_begin_column _TA_constraint_comment_org.Comment_end_line _TA_constraint_comment_org.Comment_end_column _TA_constraint_comment_org.Entry_ID _TA_constraint_comment_org.Torsion_angle_constraint_list_ID 1 'From DANGLE:' 2 1 2 15 rr_6ux5 1 stop_ loop_ _TA_constraint_conv_err.ID _TA_constraint_conv_err.Parse_file_ID _TA_constraint_conv_err.Parse_file_constraint_ID _TA_constraint_conv_err.Conv_error_type _TA_constraint_conv_err.Conv_error_note _TA_constraint_conv_err.Entry_ID _TA_constraint_conv_err.Torsion_angle_constraint_list_ID 1 2 1 1 "Not handling restraint 1, resonance(s) ' .7.C' (nmrStar names),' .8.N' (nmrStar names),' .8.CA' (nmrStar names),' .8.C' (nmrStar names) not linked" rr_6ux5 1 2 2 2 1 "Not handling restraint 2, resonance(s) ' .8.C' (nmrStar names),' .9.N' (nmrStar names),' .9.CA' (nmrStar names),' .9.C' (nmrStar names) not linked" rr_6ux5 1 3 2 3 1 "Not handling restraint 3, resonance(s) ' .9.C' (nmrStar names),' .10.N' (nmrStar names),' .10.CA' (nmrStar names),' .10.C' (nmrStar names) not linked" rr_6ux5 1 4 2 4 1 "Not handling restraint 4, resonance(s) ' .10.C' (nmrStar names),' .11.N' (nmrStar names),' .11.CA' (nmrStar names),' .11.C' (nmrStar names) not linked" rr_6ux5 1 5 2 5 1 "Not handling restraint 5, resonance(s) ' .11.C' (nmrStar names),' .12.N' (nmrStar names),' .12.CA' (nmrStar names),' .12.C' (nmrStar names) not linked" rr_6ux5 1 6 2 6 1 "Not handling restraint 6, resonance(s) ' .12.C' (nmrStar names),' .13.N' (nmrStar names),' .13.CA' (nmrStar names),' .13.C' (nmrStar names) not linked" rr_6ux5 1 7 2 7 1 "Not handling restraint 7, resonance(s) ' .13.C' (nmrStar names),' .14.N' (nmrStar names),' .14.CA' (nmrStar names),' .14.C' (nmrStar names) not linked" rr_6ux5 1 8 2 8 1 "Not handling restraint 8, resonance(s) ' .14.C' (nmrStar names),' .15.N' (nmrStar names),' .15.CA' (nmrStar names),' .15.C' (nmrStar names) not linked" rr_6ux5 1 9 2 9 1 "Not handling restraint 9, resonance(s) ' .15.C' (nmrStar names),' .16.N' (nmrStar names),' .16.CA' (nmrStar names),' .16.C' (nmrStar names) not linked" rr_6ux5 1 10 2 10 1 "Not handling restraint 10, resonance(s) ' .16.C' (nmrStar names),' .17.N' (nmrStar names),' .17.CA' (nmrStar names),' .17.C' (nmrStar names) not linked" rr_6ux5 1 11 2 11 1 "Not handling restraint 11, resonance(s) ' .17.C' (nmrStar names),' .18.N' (nmrStar names),' .18.CA' (nmrStar names),' .18.C' (nmrStar names) not linked" rr_6ux5 1 12 2 12 1 "Not handling restraint 12, resonance(s) ' .18.C' (nmrStar names),' .19.N' (nmrStar names),' .19.CA' (nmrStar names),' .19.C' (nmrStar names) not linked" rr_6ux5 1 13 2 13 1 "Not handling restraint 13, resonance(s) ' .19.C' (nmrStar names),' .20.N' (nmrStar names),' .20.CA' (nmrStar names),' .20.C' (nmrStar names) not linked" rr_6ux5 1 14 2 14 1 "Not handling restraint 14, resonance(s) ' .20.C' (nmrStar names),' .21.N' (nmrStar names),' .21.CA' (nmrStar names),' .21.C' (nmrStar names) not linked" rr_6ux5 1 15 2 15 1 "Not handling restraint 15, resonance(s) ' .21.C' (nmrStar names),' .22.N' (nmrStar names),' .22.CA' (nmrStar names),' .22.C' (nmrStar names) not linked" rr_6ux5 1 16 2 16 1 "Not handling restraint 16, resonance(s) ' .22.C' (nmrStar names),' .23.N' (nmrStar names),' .23.CA' (nmrStar names),' .23.C' (nmrStar names) not linked" rr_6ux5 1 17 2 17 1 "Not handling restraint 17, resonance(s) ' .25.C' (nmrStar names),' .26.N' (nmrStar names),' .26.CA' (nmrStar names),' .26.C' (nmrStar names) not linked" rr_6ux5 1 18 2 18 1 "Not handling restraint 18, resonance(s) ' .29.C' (nmrStar names),' .30.N' (nmrStar names),' .30.CA' (nmrStar names),' .30.C' (nmrStar names) not linked" rr_6ux5 1 19 2 19 1 "Not handling restraint 19, resonance(s) ' .30.C' (nmrStar names),' .31.N' (nmrStar names),' .31.CA' (nmrStar names),' .31.C' (nmrStar names) not linked" rr_6ux5 1 20 2 20 1 "Not handling restraint 20, resonance(s) ' .31.C' (nmrStar names),' .32.N' (nmrStar names),' .32.CA' (nmrStar names),' .32.C' (nmrStar names) not linked" rr_6ux5 1 21 2 21 1 "Not handling restraint 21, resonance(s) ' .32.C' (nmrStar names),' .33.N' (nmrStar names),' .33.CA' (nmrStar names),' .33.C' (nmrStar names) not linked" rr_6ux5 1 22 2 22 1 "Not handling restraint 22, resonance(s) ' .33.C' (nmrStar names),' .34.N' (nmrStar names),' .34.CA' (nmrStar names),' .34.C' (nmrStar names) not linked" rr_6ux5 1 23 2 23 1 "Not handling restraint 23, resonance(s) ' .34.C' (nmrStar names),' .35.N' (nmrStar names),' .35.CA' (nmrStar names),' .35.C' (nmrStar names) not linked" rr_6ux5 1 24 2 24 1 "Not handling restraint 24, resonance(s) ' .35.C' (nmrStar names),' .36.N' (nmrStar names),' .36.CA' (nmrStar names),' .36.C' (nmrStar names) not linked" rr_6ux5 1 25 2 25 1 "Not handling restraint 25, resonance(s) ' .36.C' (nmrStar names),' .37.N' (nmrStar names),' .37.CA' (nmrStar names),' .37.C' (nmrStar names) not linked" rr_6ux5 1 26 2 26 1 "Not handling restraint 26, resonance(s) ' .37.C' (nmrStar names),' .38.N' (nmrStar names),' .38.CA' (nmrStar names),' .38.C' (nmrStar names) not linked" rr_6ux5 1 27 2 27 1 "Not handling restraint 27, resonance(s) ' .38.C' (nmrStar names),' .39.N' (nmrStar names),' .39.CA' (nmrStar names),' .39.C' (nmrStar names) not linked" rr_6ux5 1 28 2 28 1 "Not handling restraint 28, resonance(s) ' .39.C' (nmrStar names),' .40.N' (nmrStar names),' .40.CA' (nmrStar names),' .40.C' (nmrStar names) not linked" rr_6ux5 1 29 2 29 1 "Not handling restraint 29, resonance(s) ' .40.C' (nmrStar names),' .41.N' (nmrStar names),' .41.CA' (nmrStar names),' .41.C' (nmrStar names) not linked" rr_6ux5 1 30 2 30 1 "Not handling restraint 30, resonance(s) ' .41.C' (nmrStar names),' .42.N' (nmrStar names),' .42.CA' (nmrStar names),' .42.C' (nmrStar names) not linked" rr_6ux5 1 31 2 31 1 "Not handling restraint 31, resonance(s) ' .42.C' (nmrStar names),' .43.N' (nmrStar names),' .43.CA' (nmrStar names),' .43.C' (nmrStar names) not linked" rr_6ux5 1 32 2 32 1 "Not handling restraint 32, resonance(s) ' .43.C' (nmrStar names),' .44.N' (nmrStar names),' .44.CA' (nmrStar names),' .44.C' (nmrStar names) not linked" rr_6ux5 1 33 2 33 1 "Not handling restraint 33, resonance(s) ' .44.C' (nmrStar names),' .45.N' (nmrStar names),' .45.CA' (nmrStar names),' .45.C' (nmrStar names) not linked" rr_6ux5 1 34 2 34 1 "Not handling restraint 34, resonance(s) ' .45.C' (nmrStar names),' .46.N' (nmrStar names),' .46.CA' (nmrStar names),' .46.C' (nmrStar names) not linked" rr_6ux5 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_6ux5 _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details 'Generated by Wattos' _Org_constr_file_comment.Comment '*HEADER TOXIN 06-NOV-19 6UX5 *TITLE STRUCTURE OF ACRORHAGIN I FROM THE SEA ANEMONE ACTINIA EQUINA *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: U-ACTITOXIN-AEQ5A; *COMPND 3 CHAIN: A; *COMPND 4 SYNONYM: U-AITX-AEQ5A,ACRORHAGIN I,ACRORHAGIN-1; *COMPND 5 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: ACTINIA EQUINA; *SOURCE 3 ORGANISM_COMMON: BEADLET ANEMONE; *SOURCE 4 ORGANISM_TAXID: 6106; *SOURCE 5 TISSUE: ACRORHAGI; *SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); *SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; *SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) *KEYWDS TOXIN *EXPDTA SOLUTION NMR *NUMMDL 20 *AUTHOR B.KRISHNARJUNA,P.SUNANDA,R.S.NORTON *REVDAT 1 18-NOV-20 6UX5 0' save_