data_wwPDB_remediated_restraints_file_for_PDB_entry_6ben # This wwPDB archive file contains, for PDB entry 6ben: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389-396. ####################### # Entry information # ####################### save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_6ben _Entry.Title 'wwPDB remediated NMR restraints for PDB entry 6ben' _Entry.Version_type original _Entry.NMR_STAR_version 3.1.0.8 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details 'Contains the remediated restraint lists and coordinates for PDB entry 6ben' _Entry.PDB_coordinate_file_version 3.20 loop_ _Related_entries.Database_name _Related_entries.Database_accession_code _Related_entries.Relationship _Related_entries.Entry_ID PDB 6ben 'Master copy' rr_6ben stop_ save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_6ben _Assembly.ID 1 _Assembly.Name 6ben _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'not present' _Assembly.Molecular_mass 1037.1205 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 'DAR Q DPR DGN R DGL PQ' 1 $_DAR_Q_DPR__DGN_R_DGL_PQ A . no . . . . . . rr_6ben 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save__DAR_Q_DPR__DGN_R_DGL_PQ _Entity.Sf_category entity _Entity.Sf_framecode '_DAR_Q_DPR__DGN_R_DGL_PQ' _Entity.Entry_ID rr_6ben _Entity.ID 1 _Entity.Name '_DAR_Q_DPR__DGN_R_DGL_PQ' _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code XQXXRXPQ _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer yes _Entity.Nstd_chirality yes _Entity.Nstd_linkage no _Entity.Number_of_monomers 8 _Entity.Paramagnetic no _Entity.Thiol_state 'not present' _Entity.Parent_entity_ID 1 _Entity.Formula_weight 1037.1205 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . . . rr_6ben 1 2 . GLN . rr_6ben 1 3 . DPR . rr_6ben 1 4 . . . rr_6ben 1 5 . ARG . rr_6ben 1 6 . . . rr_6ben 1 7 . PRO . rr_6ben 1 8 . GLN . rr_6ben 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . . 1 1 rr_6ben 1 . GLN 2 2 rr_6ben 1 . DPR 3 3 rr_6ben 1 . . 4 4 rr_6ben 1 . ARG 5 5 rr_6ben 1 . . 6 6 rr_6ben 1 . PRO 7 7 rr_6ben 1 . GLN 8 8 rr_6ben 1 stop_ save_ ################################# # Polymer residues and ligands # ################################# save_chem_comp_DAR _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_DAR _Chem_comp.Entry_ID rr_6ben _Chem_comp.ID 1 _Chem_comp.Name Dar _Chem_comp.Type 'L-peptide NH3 amino terminus' _Chem_comp.Formal_charge 0 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula 'C6 H13 N4 O' _Chem_comp.Formula_weight 157.1949 save_ save_chem_comp_DPR _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_DPR _Chem_comp.Entry_ID rr_6ben _Chem_comp.ID DPR _Chem_comp.Name D-proline _Chem_comp.Type 'L-peptide linking' _Chem_comp.PDB_code DPR _Chem_comp.Std_deriv_one_letter_code P _Chem_comp.Std_deriv_three_letter_code Pro _Chem_comp.Std_deriv_PDB_code PRO _Chem_comp.Std_deriv_chem_comp_name PROLINE _Chem_comp.Formal_charge 0 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula 'C5 H7 N O' _Chem_comp.Formula_weight 97.1164 loop_ _Chem_comp_common_name.Name _Chem_comp_common_name.Type _Chem_comp_common_name.Entry_ID _Chem_comp_common_name.Comp_ID L-proline name rr_6ben DPR stop_ save_ save_chem_comp_DGN _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_DGN _Chem_comp.Entry_ID rr_6ben _Chem_comp.ID 2 _Chem_comp.Name Dgn _Chem_comp.Type 'L-peptide linking' _Chem_comp.Formal_charge 0 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula 'C5 H8 N2 O2' _Chem_comp.Formula_weight 128.1304 save_ save_chem_comp_DGL _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_DGL _Chem_comp.Entry_ID rr_6ben _Chem_comp.ID 3 _Chem_comp.Name Dgl _Chem_comp.Type 'L-peptide linking' _Chem_comp.Formal_charge 0 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula 'C5 H6 N O3' _Chem_comp.Formula_weight 128.1073 save_ ############################## # Structure determinations # ############################## ########################## # Conformer statistics # ########################## save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_6ben _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 20 save_ ########################### # Constraint Statistics # ########################### save_constraint_statistics _Constraint_stat_list.Sf_framecode constraint_statistics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_6ben _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 6ben.mr . . 'MR format' 1 comment 'Not applicable' 'Not applicable' 0 rr_6ben 1 1 6ben.mr . . XPLOR/CNS 2 distance NOE simple 88 rr_6ben 1 1 6ben.mr . . 'MR format' 3 'nomenclature mapping' 'Not applicable' 'Not applicable' 0 rr_6ben 1 stop_ save_ save_CNS/XPLOR_distance_constraints_2 _Gen_dist_constraint_list.Sf_category general_distance_constraints _Gen_dist_constraint_list.Sf_framecode CNS/XPLOR_distance_constraints_2 _Gen_dist_constraint_list.Entry_ID rr_6ben _Gen_dist_constraint_list.ID 1 _Gen_dist_constraint_list.Constraint_type NOE _Gen_dist_constraint_list.Details 'Generated by Wattos' _Gen_dist_constraint_list.Constraint_file_ID 1 _Gen_dist_constraint_list.Block_ID 2 loop_ _Gen_dist_constraint_software.Software_ID _Gen_dist_constraint_software.Software_label _Gen_dist_constraint_software.Method_ID _Gen_dist_constraint_software.Method_label _Gen_dist_constraint_software.Entry_ID _Gen_dist_constraint_software.Gen_dist_constraint_list_ID . . . . rr_6ben 1 stop_ loop_ _Gen_dist_constraint.ID _Gen_dist_constraint.Member_ID _Gen_dist_constraint.Member_logic_code _Gen_dist_constraint.Assembly_atom_ID_1 _Gen_dist_constraint.Entity_assembly_ID_1 _Gen_dist_constraint.Entity_ID_1 _Gen_dist_constraint.Comp_index_ID_1 _Gen_dist_constraint.Seq_ID_1 _Gen_dist_constraint.Comp_ID_1 _Gen_dist_constraint.Atom_ID_1 _Gen_dist_constraint.Atom_type_1 _Gen_dist_constraint.Atom_isotope_number_1 _Gen_dist_constraint.Resonance_ID_1 _Gen_dist_constraint.Assembly_atom_ID_2 _Gen_dist_constraint.Entity_assembly_ID_2 _Gen_dist_constraint.Entity_ID_2 _Gen_dist_constraint.Comp_index_ID_2 _Gen_dist_constraint.Seq_ID_2 _Gen_dist_constraint.Comp_ID_2 _Gen_dist_constraint.Atom_ID_2 _Gen_dist_constraint.Atom_type_2 _Gen_dist_constraint.Atom_isotope_number_2 _Gen_dist_constraint.Resonance_ID_2 _Gen_dist_constraint.Intensity_val _Gen_dist_constraint.Intensity_lower_val_err _Gen_dist_constraint.Intensity_upper_val_err _Gen_dist_constraint.Distance_val _Gen_dist_constraint.Distance_lower_bound_val _Gen_dist_constraint.Distance_upper_bound_val _Gen_dist_constraint.Contribution_fractional_val _Gen_dist_constraint.Spectral_peak_ID _Gen_dist_constraint.Spectral_peak_list_ID _Gen_dist_constraint.PDB_record_ID_1 _Gen_dist_constraint.PDB_model_num_1 _Gen_dist_constraint.PDB_strand_ID_1 _Gen_dist_constraint.PDB_ins_code_1 _Gen_dist_constraint.PDB_residue_no_1 _Gen_dist_constraint.PDB_residue_name_1 _Gen_dist_constraint.PDB_atom_name_1 _Gen_dist_constraint.PDB_record_ID_2 _Gen_dist_constraint.PDB_model_num_2 _Gen_dist_constraint.PDB_strand_ID_2 _Gen_dist_constraint.PDB_ins_code_2 _Gen_dist_constraint.PDB_residue_no_2 _Gen_dist_constraint.PDB_residue_name_2 _Gen_dist_constraint.PDB_atom_name_2 _Gen_dist_constraint.Auth_entity_assembly_ID_1 _Gen_dist_constraint.Auth_asym_ID_1 _Gen_dist_constraint.Auth_chain_ID_1 _Gen_dist_constraint.Auth_seq_ID_1 _Gen_dist_constraint.Auth_comp_ID_1 _Gen_dist_constraint.Auth_atom_ID_1 _Gen_dist_constraint.Auth_alt_ID_1 _Gen_dist_constraint.Auth_atom_name_1 _Gen_dist_constraint.Auth_entity_assembly_ID_2 _Gen_dist_constraint.Auth_asym_ID_2 _Gen_dist_constraint.Auth_chain_ID_2 _Gen_dist_constraint.Auth_seq_ID_2 _Gen_dist_constraint.Auth_comp_ID_2 _Gen_dist_constraint.Auth_atom_ID_2 _Gen_dist_constraint.Auth_alt_ID_2 _Gen_dist_constraint.Auth_atom_name_2 _Gen_dist_constraint.Entry_ID _Gen_dist_constraint.Gen_dist_constraint_list_ID 1 1 . . 1 1 2 2 GLN H H . . . 1 1 2 2 GLN HA H . . . . . 3.5 2.3 4.7 . . . . . A . 2 GLN H . . A . 2 GLN HA . . . 2 . HN . . . . . 2 . HA . . rr_6ben 1 2 1 . . 1 1 2 2 GLN HE22 H . . . 1 1 2 2 GLN HE21 H . . . . . 2.5 1.8 3.2 . . . . . A . 2 GLN HE22 . . A . 2 GLN HE21 . . . 2 . HE22 . . . . . 2 . HE21 . . rr_6ben 1 3 1 . . 1 1 2 2 GLN HA H . . . 1 1 5 5 ARG H H . . . . . 4.5 2.9 6.1 . . . . . A . 2 GLN HA . . A . 5 ARG H . . . 2 . HA . . . . . 5 . HN . . rr_6ben 1 4 1 OR . 1 1 2 2 GLN H H . . . 1 1 2 2 GLN HB2 H . . . . . 4.5 2.9 6.1 . . . . . A . 2 GLN H . . A . 2 GLN HB2 . . . 2 . HN . . . . . 2 . HB# . . rr_6ben 1 4 2 OR . 1 1 2 2 GLN H H . . . 1 1 2 2 GLN HB3 H . . . . . 4.5 2.9 6.1 . . . . . A . 2 GLN H . . A . 2 GLN HB3 . . . 2 . HN . . . . . 2 . HB# . . rr_6ben 1 5 1 . . 1 1 2 2 GLN H H . . . 1 1 2 2 GLN HG2 H . . . . . 4.5 2.9 6.1 . . . . . A . 2 GLN H . . A . 2 GLN HG2 . . . 2 . HN . . . . . 2 . HG2 . . rr_6ben 1 6 1 . . 1 1 2 2 GLN HG2 H . . . 1 1 8 8 GLN HE21 H . . . . . 4.5 2.9 6.1 . . . . . A . 2 GLN HG2 . . A . 8 GLN HE21 . . . 2 . HG2 . . . . . 8 . HE21 . . rr_6ben 1 7 1 . . 1 1 2 2 GLN HE21 H . . . 1 1 2 2 GLN HG3 H . . . . . 4.5 2.9 6.1 . . . . . A . 2 GLN HE21 . . A . 2 GLN HG3 . . . 2 . HE21 . . . . . 2 . HG1 . . rr_6ben 1 8 1 . . 1 1 2 2 GLN H H . . . 1 1 2 2 GLN HG3 H . . . . . 4.5 2.9 6.1 . . . . . A . 2 GLN H . . A . 2 GLN HG3 . . . 2 . HN . . . . . 2 . HG1 . . rr_6ben 1 9 1 . . 1 1 2 2 GLN H H . . . 1 1 8 8 GLN H H . . . . . 4.5 2.9 6.1 . . . . . A . 2 GLN H . . A . 8 GLN H . . . 2 . HN . . . . . 8 . HN . . rr_6ben 1 10 1 . . 1 1 5 5 ARG H H . . . 1 1 5 5 ARG HA H . . . . . 3.5 2.3 4.7 . . . . . A . 5 ARG H . . A . 5 ARG HA . . . 5 . HN . . . . . 5 . HA . . rr_6ben 1 11 1 OR . 1 1 5 5 ARG H H . . . 1 1 5 5 ARG HB2 H . . . . . 3.5 2.3 4.7 . . . . . A . 5 ARG H . . A . 5 ARG HB2 . . . 5 . HN . . . . . 5 . HB# . . rr_6ben 1 11 2 OR . 1 1 5 5 ARG H H . . . 1 1 5 5 ARG HB3 H . . . . . 3.5 2.3 4.7 . . . . . A . 5 ARG H . . A . 5 ARG HB3 . . . 5 . HN . . . . . 5 . HB# . . rr_6ben 1 12 1 OR . 1 1 8 8 GLN HE21 H . . . 1 1 5 5 ARG HB2 H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN HE21 . . A . 5 ARG HB2 . . . 8 . HE21 . . . . . 5 . HB# . . rr_6ben 1 12 2 OR . 1 1 8 8 GLN HE21 H . . . 1 1 5 5 ARG HB3 H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN HE21 . . A . 5 ARG HB3 . . . 8 . HE21 . . . . . 5 . HB# . . rr_6ben 1 13 1 OR . 1 1 8 8 GLN H H . . . 1 1 5 5 ARG HB2 H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN H . . A . 5 ARG HB2 . . . 8 . HN . . . . . 5 . HB# . . rr_6ben 1 13 2 OR . 1 1 8 8 GLN H H . . . 1 1 5 5 ARG HB3 H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN H . . A . 5 ARG HB3 . . . 8 . HN . . . . . 5 . HB# . . rr_6ben 1 14 1 OR . 1 1 5 5 ARG H H . . . 1 1 5 5 ARG HD2 H . . . . . 4.5 2.9 6.1 . . . . . A . 5 ARG H . . A . 5 ARG HD2 . . . 5 . HN . . . . . 5 . HD# . . rr_6ben 1 14 2 OR . 1 1 5 5 ARG H H . . . 1 1 5 5 ARG HD3 H . . . . . 4.5 2.9 6.1 . . . . . A . 5 ARG H . . A . 5 ARG HD3 . . . 5 . HN . . . . . 5 . HD# . . rr_6ben 1 15 1 . . 1 1 5 5 ARG H H . . . 1 1 5 5 ARG HE H . . . . . 4.5 2.9 6.1 . . . . . A . 5 ARG H . . A . 5 ARG HE . . . 5 . HN . . . . . 5 . HE . . rr_6ben 1 16 1 . . 1 1 5 5 ARG H H . . . 1 1 5 5 ARG HG2 H . . . . . 4.5 2.9 6.1 . . . . . A . 5 ARG H . . A . 5 ARG HG2 . . . 5 . HN . . . . . 5 . HG2 . . rr_6ben 1 17 1 . . 1 1 5 5 ARG H H . . . 1 1 5 5 ARG HG3 H . . . . . 4.5 2.9 6.1 . . . . . A . 5 ARG H . . A . 5 ARG HG3 . . . 5 . HN . . . . . 5 . HG1 . . rr_6ben 1 18 1 . . 1 1 8 8 GLN HE21 H . . . 1 1 5 5 ARG HG3 H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN HE21 . . A . 5 ARG HG3 . . . 8 . HE21 . . . . . 5 . HG1 . . rr_6ben 1 19 1 OR . 1 1 7 7 PRO HD2 H . . . 1 1 7 7 PRO HG2 H . . . . . 3.5 2.3 4.7 . . . . . A . 7 PRO HD2 . . A . 7 PRO HG2 . . . 7 . HD# . . . . . 7 . HG# . . rr_6ben 1 19 2 OR . 1 1 7 7 PRO HD3 H . . . 1 1 7 7 PRO HG2 H . . . . . 3.5 2.3 4.7 . . . . . A . 7 PRO HD3 . . A . 7 PRO HG2 . . . 7 . HD# . . . . . 7 . HG# . . rr_6ben 1 19 3 OR . 1 1 7 7 PRO HG3 H . . . 1 1 7 7 PRO HD2 H . . . . . 3.5 2.3 4.7 . . . . . A . 7 PRO HG3 . . A . 7 PRO HD2 . . . 7 . HG# . . . . . 7 . HD# . . rr_6ben 1 19 4 OR . 1 1 7 7 PRO HD3 H . . . 1 1 7 7 PRO HG3 H . . . . . 3.5 2.3 4.7 . . . . . A . 7 PRO HD3 . . A . 7 PRO HG3 . . . 7 . HD# . . . . . 7 . HG# . . rr_6ben 1 20 1 . . 1 1 8 8 GLN HE21 H . . . 1 1 7 7 PRO HB2 H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN HE21 . . A . 7 PRO HB2 . . . 8 . HE21 . . . . . 7 . HB2 . . rr_6ben 1 21 1 . . 1 1 8 8 GLN H H . . . 1 1 7 7 PRO HB2 H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN H . . A . 7 PRO HB2 . . . 8 . HN . . . . . 7 . HB2 . . rr_6ben 1 22 1 OR . 1 1 7 7 PRO HA H . . . 1 1 7 7 PRO HD2 H . . . . . 4.5 2.9 6.1 . . . . . A . 7 PRO HA . . A . 7 PRO HD2 . . . 7 . HA . . . . . 7 . HD# . . rr_6ben 1 22 2 OR . 1 1 7 7 PRO HD3 H . . . 1 1 7 7 PRO HA H . . . . . 4.5 2.9 6.1 . . . . . A . 7 PRO HD3 . . A . 7 PRO HA . . . 7 . HD# . . . . . 7 . HA . . rr_6ben 1 23 1 OR . 1 1 7 7 PRO HB2 H . . . 1 1 7 7 PRO HD2 H . . . . . 4.5 2.9 6.1 . . . . . A . 7 PRO HB2 . . A . 7 PRO HD2 . . . 7 . HB2 . . . . . 7 . HD# . . rr_6ben 1 23 2 OR . 1 1 7 7 PRO HD3 H . . . 1 1 7 7 PRO HB2 H . . . . . 4.5 2.9 6.1 . . . . . A . 7 PRO HD3 . . A . 7 PRO HB2 . . . 7 . HD# . . . . . 7 . HB2 . . rr_6ben 1 24 1 OR . 1 1 7 7 PRO HB3 H . . . 1 1 7 7 PRO HD2 H . . . . . 4.5 2.9 6.1 . . . . . A . 7 PRO HB3 . . A . 7 PRO HD2 . . . 7 . HB1 . . . . . 7 . HD# . . rr_6ben 1 24 2 OR . 1 1 7 7 PRO HD3 H . . . 1 1 7 7 PRO HB3 H . . . . . 4.5 2.9 6.1 . . . . . A . 7 PRO HD3 . . A . 7 PRO HB3 . . . 7 . HD# . . . . . 7 . HB1 . . rr_6ben 1 25 1 OR . 1 1 8 8 GLN H H . . . 1 1 7 7 PRO HD2 H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN H . . A . 7 PRO HD2 . . . 8 . HN . . . . . 7 . HD# . . rr_6ben 1 25 2 OR . 1 1 8 8 GLN H H . . . 1 1 7 7 PRO HD3 H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN H . . A . 7 PRO HD3 . . . 8 . HN . . . . . 7 . HD# . . rr_6ben 1 26 1 . . 1 1 8 8 GLN H H . . . 1 1 8 8 GLN HA H . . . . . 3.5 2.3 4.7 . . . . . A . 8 GLN H . . A . 8 GLN HA . . . 8 . HN . . . . . 8 . HA . . rr_6ben 1 27 1 . . 1 1 8 8 GLN HE21 H . . . 1 1 8 8 GLN HA H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN HE21 . . A . 8 GLN HA . . . 8 . HE21 . . . . . 8 . HA . . rr_6ben 1 28 1 . . 1 1 8 8 GLN H H . . . 1 1 8 8 GLN HB2 H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN H . . A . 8 GLN HB2 . . . 8 . HN . . . . . 8 . HB2 . . rr_6ben 1 29 1 . . 1 1 8 8 GLN H H . . . 1 1 8 8 GLN HB3 H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN H . . A . 8 GLN HB3 . . . 8 . HN . . . . . 8 . HB1 . . rr_6ben 1 30 1 . . 1 1 8 8 GLN H H . . . 1 1 8 8 GLN HE21 H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN H . . A . 8 GLN HE21 . . . 8 . HN . . . . . 8 . HE21 . . rr_6ben 1 31 1 . . 1 1 8 8 GLN HE21 H . . . 1 1 8 8 GLN HG2 H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN HE21 . . A . 8 GLN HG2 . . . 8 . HE21 . . . . . 8 . HG2 . . rr_6ben 1 32 1 . . 1 1 8 8 GLN H H . . . 1 1 8 8 GLN HG2 H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN H . . A . 8 GLN HG2 . . . 8 . HN . . . . . 8 . HG2 . . rr_6ben 1 33 1 . . 1 1 8 8 GLN H H . . . 1 1 8 8 GLN HG3 H . . . . . 4.5 2.9 6.1 . . . . . A . 8 GLN H . . A . 8 GLN HG3 . . . 8 . HN . . . . . 8 . HG1 . . rr_6ben 1 stop_ loop_ _Gen_dist_constraint_parse_err.ID _Gen_dist_constraint_parse_err.Content _Gen_dist_constraint_parse_err.Begin_line _Gen_dist_constraint_parse_err.Begin_column _Gen_dist_constraint_parse_err.End_line _Gen_dist_constraint_parse_err.End_column _Gen_dist_constraint_parse_err.Entry_ID _Gen_dist_constraint_parse_err.Gen_dist_constraint_list_ID 1 '# Restraints file 1: dsym_noe.tbl' 1 1 1 33 rr_6ben 1 stop_ loop_ _Gen_dist_constraint_comment_org.ID _Gen_dist_constraint_comment_org.Comment_text _Gen_dist_constraint_comment_org.Comment_begin_line _Gen_dist_constraint_comment_org.Comment_begin_column _Gen_dist_constraint_comment_org.Comment_end_line _Gen_dist_constraint_comment_org.Comment_end_column _Gen_dist_constraint_comment_org.Entry_ID _Gen_dist_constraint_comment_org.Gen_dist_constraint_list_ID 1 ; -------------------------------------------------------------------------! NOE Table for D_Symmetric Hug peptide ! Updated 111516 mds D_Symmetric Hug, 8mer arg GLN pro gln ARG glu PRO GLN Upper case L-Amino Acid Lower case D-Amino Acid ! NOE binning !! strong 2.5 0.7 0.7 medium 3.5 1.2 1.2 weak 4.5 1.6 1.6 very weak 5.0 2.0 2.0 TOTAL NOES = 88 long range (j-i >6) = 5 short range (2 > j-i < 5) = 14 sequential (i to j) = 23 intraresidue (i to i) = 46 ------------------------------------------------------------------------! *** Bacbone NOE***! HN-HA HN-HN HA-HA arg 1 ; 2 1 30 8 rr_6ben 1 2 'GLN 2' 46 1 46 8 rr_6ben 1 3 'pro 3' 60 1 60 8 rr_6ben 1 4 ; gln 4 assign ( resid 4 and name HE22 ) ( resid 4 and name HE21 ) 3.5 1.2 1.2 ; 72 1 73 75 rr_6ben 1 5 'ARG 5' 83 1 83 8 rr_6ben 1 6 'glu 6' 100 1 100 8 rr_6ben 1 7 'PRO 7' 116 1 116 8 rr_6ben 1 8 'GLN 8' 128 1 128 8 rr_6ben 1 9 'assign ( resid 8 and name HE22 ) ( resid 8 and name HE21 ) 3.5 1.2 1.2' 130 1 130 75 rr_6ben 1 stop_ loop_ _Gen_dist_constraint_conv_err.ID _Gen_dist_constraint_conv_err.Gen_dist_constraint_parse_file_ID _Gen_dist_constraint_conv_err.Parse_file_constraint_ID _Gen_dist_constraint_conv_err.Conv_error_type _Gen_dist_constraint_conv_err.Conv_error_note _Gen_dist_constraint_conv_err.Entry_ID _Gen_dist_constraint_conv_err.Gen_dist_constraint_list_ID 1 2 1 1 "Not handling restraint 1, item 1, resonance(s) ' .1.HA' (nmrStar names),' .1.HN' (nmrStar names) not linked" rr_6ben 1 2 2 2 1 "Not handling restraint 2, item 1, resonance(s) ' .1.HA' (nmrStar names) not linked" rr_6ben 1 3 2 3 1 "Not handling restraint 3, item 1, resonance(s) ' .1.HN' (nmrStar names),' .1.HB#' (nmrStar names) not linked" rr_6ben 1 4 2 4 1 "Not handling restraint 4, item 1, resonance(s) ' .1.HN' (nmrStar names) not linked" rr_6ben 1 5 2 5 1 "Not handling restraint 5, item 1, resonance(s) ' .1.HA' (nmrStar names) not linked" rr_6ben 1 6 2 6 1 "Not handling restraint 6, item 1, resonance(s) ' .1.HB#' (nmrStar names),' .4.HE21' (nmrStar names) not linked" rr_6ben 1 7 2 7 1 "Not handling restraint 7, item 1, resonance(s) ' .1.HN' (nmrStar names),' .1.HD#' (nmrStar names) not linked" rr_6ben 1 8 2 8 1 "Not handling restraint 8, item 1, resonance(s) ' .1.HN' (nmrStar names),' .1.HE' (nmrStar names) not linked" rr_6ben 1 9 2 9 1 "Not handling restraint 9, item 1, resonance(s) ' .1.HN' (nmrStar names),' .1.HG2' (nmrStar names) not linked" rr_6ben 1 10 2 10 1 "Not handling restraint 10, item 1, resonance(s) ' .1.HG2' (nmrStar names) not linked" rr_6ben 1 11 2 11 1 "Not handling restraint 11, item 1, resonance(s) ' .1.HN' (nmrStar names),' .1.HG1' (nmrStar names) not linked" rr_6ben 1 12 2 12 1 "Not handling restraint 12, item 1, resonance(s) ' .1.HG1' (nmrStar names) not linked" rr_6ben 1 13 2 13 1 "Not handling restraint 13, item 1, resonance(s) ' .1.HN' (nmrStar names) not linked" rr_6ben 1 14 2 16 1 "Not handling restraint 16, item 1, resonance(s) ' .1.HN' (nmrStar names) not linked" rr_6ben 1 15 2 17 1 "Not handling restraint 17, item 1, resonance(s) ' .4.HN' (nmrStar names) not linked" rr_6ben 1 16 2 25 1 "Not handling restraint 25, item 1, resonance(s) ' .3.HD#' (nmrStar names),' .3.HG#' (nmrStar names) not linked" rr_6ben 1 17 2 26 1 "Not handling restraint 26, item 1, resonance(s) ' .4.HE21' (nmrStar names) not linked" rr_6ben 1 18 2 27 1 "Not handling restraint 27, item 1, resonance(s) ' .4.HN' (nmrStar names) not linked" rr_6ben 1 19 2 28 1 "Not handling restraint 28, item 1, resonance(s) ' .3.HD#' (nmrStar names) not linked" rr_6ben 1 20 2 29 1 "Not handling restraint 29, item 1, resonance(s) ' .3.HD#' (nmrStar names) not linked" rr_6ben 1 21 2 30 1 "Not handling restraint 30, item 1, resonance(s) ' .3.HD#' (nmrStar names) not linked" rr_6ben 1 22 2 31 1 "Not handling restraint 31, item 1, resonance(s) ' .3.HD#' (nmrStar names) not linked" rr_6ben 1 23 2 32 1 "Not handling restraint 32, item 1, resonance(s) ' .3.HD#' (nmrStar names),' .3.HB1' (nmrStar names) not linked" rr_6ben 1 24 2 33 1 "Not handling restraint 33, item 1, resonance(s) ' .4.HN' (nmrStar names),' .3.HD#' (nmrStar names) not linked" rr_6ben 1 25 2 34 1 "Not handling restraint 34, item 1, resonance(s) ' .3.HD#' (nmrStar names) not linked" rr_6ben 1 26 2 35 1 "Not handling restraint 35, item 1, resonance(s) ' .4.HE21' (nmrStar names),' .4.HA' (nmrStar names) not linked" rr_6ben 1 27 2 36 1 "Not handling restraint 36, item 1, resonance(s) ' .4.HN' (nmrStar names),' .4.HA' (nmrStar names) not linked" rr_6ben 1 28 2 37 1 "Not handling restraint 37, item 1, resonance(s) ' .4.HN' (nmrStar names),' .4.HB#' (nmrStar names) not linked" rr_6ben 1 29 2 38 1 "Not handling restraint 38, item 1, resonance(s) ' .4.HE21' (nmrStar names),' .4.HN' (nmrStar names) not linked" rr_6ben 1 30 2 39 1 "Not handling restraint 39, item 1, resonance(s) ' .4.HE21' (nmrStar names),' .4.HG2' (nmrStar names) not linked" rr_6ben 1 31 2 40 1 "Not handling restraint 40, item 1, resonance(s) ' .4.HN' (nmrStar names),' .4.HG2' (nmrStar names) not linked" rr_6ben 1 32 2 41 1 "Not handling restraint 41, item 1, resonance(s) ' .4.HE21' (nmrStar names),' .4.HG1' (nmrStar names) not linked" rr_6ben 1 33 2 42 1 "Not handling restraint 42, item 1, resonance(s) ' .4.HN' (nmrStar names),' .4.HG1' (nmrStar names) not linked" rr_6ben 1 34 2 44 1 "Not handling restraint 44, item 1, resonance(s) ' .6.HN' (nmrStar names) not linked" rr_6ben 1 35 2 46 1 "Not handling restraint 46, item 1, resonance(s) ' .4.HN' (nmrStar names) not linked" rr_6ben 1 36 2 47 1 "Not handling restraint 47, item 1, resonance(s) ' .4.HN' (nmrStar names) not linked" rr_6ben 1 37 2 47 1 "Not handling restraint 47, item 1, resonance(s) ' .4.HN' (nmrStar names) not linked" rr_6ben 1 38 2 54 1 "Not handling restraint 54, item 1, resonance(s) ' .6.HN' (nmrStar names) not linked" rr_6ben 1 39 2 56 1 "Not handling restraint 56, item 1, resonance(s) ' .6.HN' (nmrStar names) not linked" rr_6ben 1 40 2 57 1 "Not handling restraint 57, item 1, resonance(s) ' .6.HN' (nmrStar names),' .6.HA' (nmrStar names) not linked" rr_6ben 1 41 2 58 1 "Not handling restraint 58, item 1, resonance(s) ' .1.HN' (nmrStar names),' .6.HA' (nmrStar names) not linked" rr_6ben 1 42 2 59 1 "Not handling restraint 59, item 1, resonance(s) ' .6.HA' (nmrStar names) not linked" rr_6ben 1 43 2 60 1 "Not handling restraint 60, item 1, resonance(s) ' .6.HA' (nmrStar names) not linked" rr_6ben 1 44 2 61 1 "Not handling restraint 61, item 1, resonance(s) ' .6.HA' (nmrStar names) not linked" rr_6ben 1 45 2 62 1 "Not handling restraint 62, item 1, resonance(s) ' .6.HN' (nmrStar names),' .6.HB#' (nmrStar names) not linked" rr_6ben 1 46 2 63 1 "Not handling restraint 63, item 1, resonance(s) ' .1.HE' (nmrStar names),' .6.HG2' (nmrStar names) not linked" rr_6ben 1 47 2 64 1 "Not handling restraint 64, item 1, resonance(s) ' .6.HG2' (nmrStar names) not linked" rr_6ben 1 48 2 65 1 "Not handling restraint 65, item 1, resonance(s) ' .6.HN' (nmrStar names),' .6.HG2' (nmrStar names) not linked" rr_6ben 1 49 2 66 1 "Not handling restraint 66, item 1, resonance(s) ' .1.HE' (nmrStar names),' .6.HG1' (nmrStar names) not linked" rr_6ben 1 50 2 67 1 "Not handling restraint 67, item 1, resonance(s) ' .6.HN' (nmrStar names),' .6.HG1' (nmrStar names) not linked" rr_6ben 1 51 2 68 1 "Not handling restraint 68, item 1, resonance(s) ' .6.HG1' (nmrStar names) not linked" rr_6ben 1 52 2 69 1 "Not handling restraint 69, item 1, resonance(s) ' .6.HN' (nmrStar names) not linked" rr_6ben 1 53 2 73 1 "Not handling restraint 73, item 1, resonance(s) ' .1.HN' (nmrStar names) not linked" rr_6ben 1 54 2 73 1 "Not handling restraint 73, item 1, resonance(s) ' .1.HN' (nmrStar names) not linked" rr_6ben 1 55 2 74 1 "Not handling restraint 74, item 1, resonance(s) ' .6.HA' (nmrStar names) not linked" rr_6ben 1 56 2 74 1 "Not handling restraint 74, item 1, resonance(s) ' .6.HA' (nmrStar names) not linked" rr_6ben 1 57 2 75 1 "Not handling restraint 75, item 1, resonance(s) ' .6.HN' (nmrStar names) not linked" rr_6ben 1 58 2 75 1 "Not handling restraint 75, item 1, resonance(s) ' .6.HN' (nmrStar names) not linked" rr_6ben 1 59 2 85 1 "Not handling restraint 85, item 1, resonance(s) ' .1.HN' (nmrStar names) not linked" rr_6ben 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_6ben _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details 'Generated by Wattos' _Org_constr_file_comment.Comment '*HEADER DE NOVO PROTEIN 25-OCT-17 6BEN *TITLE SOLUTION STRUCTURE OF DE NOVO MACROCYCLE DESIGN8.2 *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: (DAR)Q(DPR)(DGN)R(DGL)PQ; *COMPND 3 CHAIN: A; *COMPND 4 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 SYNTHETIC: YES; *SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; *SOURCE 4 ORGANISM_TAXID: 9606 *KEYWDS MACROCYCLE, DE NOVO, DE NOVO PROTEIN *EXPDTA SOLUTION NMR *NUMMDL 20 *AUTHOR M.D.SHORTRIDGE,P.HOSSEINZADEH,F.PARDO-AVILA,G.VARANI,B.BAKER *REVDAT 1 27-DEC-17 6BEN 0' save_