data_101D
# 
_entry.id   101D 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.381 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   101D         pdb_0000101d 10.2210/pdb101d/pdb 
RCSB  GDLB31       ?            ?                   
WWPDB D_1000170002 ?            ?                   
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        101D 
_pdbx_database_status.recvd_initial_deposition_date   1994-12-14 
_pdbx_database_status.deposit_site                    BNL 
_pdbx_database_status.process_site                    NDB 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Goodsell, D.S.'  1 
'Kopka, M.L.'     2 
'Dickerson, R.E.' 3 
# 
loop_
_citation.id 
_citation.title 
_citation.journal_abbrev 
_citation.journal_volume 
_citation.page_first 
_citation.page_last 
_citation.year 
_citation.journal_id_ASTM 
_citation.country 
_citation.journal_id_ISSN 
_citation.journal_id_CSD 
_citation.book_publisher 
_citation.pdbx_database_id_PubMed 
_citation.pdbx_database_id_DOI 
primary 'Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation.' Biochemistry 34  4983 
4993 1995 BICHAW US 0006-2960 0033 ? 7711020 10.1021/bi00015a009 
1       'Binding of an Antitumor Drug to DNA. Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G'                    J.Mol.Biol.  183 553  
563  1985 JMOBAK UK 0022-2836 0070 ? ?       ?                   
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Goodsell, D.S.'  1 ? 
primary 'Kopka, M.L.'     2 ? 
primary 'Dickerson, R.E.' 3 ? 
1       'Kopka, M.L.'     4 ? 
1       'Yoon, C.'        5 ? 
1       'Goodsell, D.S.'  6 ? 
1       'Pjura, P.'       7 ? 
1       'Dickerson, R.E.' 8 ? 
# 
_cell.entry_id           101D 
_cell.length_a           24.270 
_cell.length_b           39.620 
_cell.length_c           63.570 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         101D 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3')
;
3742.288 2  ? ? ? ? 
2 non-polymer syn 'MAGNESIUM ION'                                          24.305   1  ? ? ? ? 
3 non-polymer syn NETROPSIN                                                430.464  1  ? ? ? ? 
4 water       nat water                                                    18.015   36 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(CBR)(DG)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGAATTCGCG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC  n 
1 2  DG  n 
1 3  DC  n 
1 4  DG  n 
1 5  DA  n 
1 6  DA  n 
1 7  DT  n 
1 8  DT  n 
1 9  CBR n 
1 10 DG  n 
1 11 DC  n 
1 12 DG  n 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    101D 
_struct_ref.pdbx_db_accession          101D 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 101D A 1 ? 12 ? 101D 1  ? 12 ? 1  12 
2 1 101D B 1 ? 12 ? 101D 13 ? 24 ? 13 24 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE"         ? 'C10 H14 N5 O6 P'   331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"          ? 'C9 H14 N3 O7 P'    307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"         ? 'C10 H14 N5 O7 P'   347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"                 ? 'C10 H15 N2 O8 P'   322.208 
HOH non-polymer   . WATER                                        ? 'H2 O'              18.015  
MG  non-polymer   . 'MAGNESIUM ION'                              ? 'Mg 2'              24.305  
NT  non-polymer   . NETROPSIN                                    ? 'C18 H26 N10 O3'    430.464 
# 
_exptl.entry_id          101D 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.00 
_exptl_crystal.density_percent_sol   38.45 
_exptl_crystal.description           ? 
# 
_refine.entry_id                                 101D 
_refine.ls_number_reflns_obs                     2430 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          2.000 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             8.000 
_refine.ls_d_res_high                            2.250 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_obs                          0.163 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       ? 
_refine.ls_R_factor_R_free                       0.252 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   486 
_refine_hist.pdbx_number_atoms_ligand         37 
_refine_hist.number_atoms_solvent             33 
_refine_hist.number_atoms_total               556 
_refine_hist.d_res_high                       2.250 
_refine_hist.d_res_low                        8.000 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
n_bond_d               ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_angle_d              ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_planar_d             ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_hb_or_metal_coord    ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_sugar_bond_it        4.282 6.000 ? ? 'X-RAY DIFFRACTION' ? 
n_sugar_angle_it       4.990 6.000 ? ? 'X-RAY DIFFRACTION' ? 
n_phos_bond_it         5.693 6.000 ? ? 'X-RAY DIFFRACTION' ? 
n_phos_angle_it        5.227 6.000 ? ? 'X-RAY DIFFRACTION' ? 
n_bond_angle_restr     ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_dihedral_angle_restr ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_impr_tor             ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
n_sugar_bond_d         0.024 0.030 ? ? 'X-RAY DIFFRACTION' ? 
n_sugar_bond_angle_d   0.040 0.040 ? ? 'X-RAY DIFFRACTION' ? 
n_phos_bond_d          0.026 0.040 ? ? 'X-RAY DIFFRACTION' ? 
n_phos_bond_angle_d    0.057 0.050 ? ? 'X-RAY DIFFRACTION' ? 
n_plane_restr          0.014 0.020 ? ? 'X-RAY DIFFRACTION' ? 
n_chiral_restr         0.161 0.150 ? ? 'X-RAY DIFFRACTION' ? 
n_singtor_nbd          0.093 0.100 ? ? 'X-RAY DIFFRACTION' ? 
n_multtor_nbd          0.097 0.100 ? ? 'X-RAY DIFFRACTION' ? 
n_xhyhbond_nbd         ?     ?     ? ? 'X-RAY DIFFRACTION' ? 
# 
_struct.entry_id                  101D 
_struct.title                     'REFINEMENT OF NETROPSIN BOUND TO DNA: BIAS AND FEEDBACK IN ELECTRON DENSITY MAP INTERPRETATION' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        101D 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 4 ? 
F N N 4 ? 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A DT  8  "O3'" ? ? ? 1_555 A CBR 9  P  ? ? A DT  8  A CBR 9  1_555 ? ? ? ? ? ? ?            1.624 ? ? 
covale2  covale both ? A CBR 9  "O3'" ? ? ? 1_555 A DG  10 P  ? ? A CBR 9  A DG  10 1_555 ? ? ? ? ? ? ?            1.551 ? ? 
covale3  covale both ? B DT  8  "O3'" ? ? ? 1_555 B CBR 9  P  ? ? B DT  20 B CBR 21 1_555 ? ? ? ? ? ? ?            1.578 ? ? 
covale4  covale both ? B CBR 9  "O3'" ? ? ? 1_555 B DG  10 P  ? ? B CBR 21 B DG  22 1_555 ? ? ? ? ? ? ?            1.595 ? ? 
metalc1  metalc ?    ? C MG  .  MG    ? ? ? 1_555 E HOH .  O  ? ? A MG  26 A HOH 61 1_555 ? ? ? ? ? ? ?            2.164 ? ? 
metalc2  metalc ?    ? C MG  .  MG    ? ? ? 1_555 F HOH .  O  ? ? A MG  26 B HOH 60 1_555 ? ? ? ? ? ? ?            2.101 ? ? 
metalc3  metalc ?    ? C MG  .  MG    ? ? ? 1_555 F HOH .  O  ? ? A MG  26 B HOH 62 1_555 ? ? ? ? ? ? ?            2.110 ? ? 
hydrog1  hydrog ?    ? A DC  1  N3    ? ? ? 1_555 B DG  12 N1 ? ? A DC  1  B DG  24 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A DC  1  N4    ? ? ? 1_555 B DG  12 O6 ? ? A DC  1  B DG  24 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A DC  1  O2    ? ? ? 1_555 B DG  12 N2 ? ? A DC  1  B DG  24 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A DG  2  N1    ? ? ? 1_555 B DC  11 N3 ? ? A DG  2  B DC  23 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A DG  2  N2    ? ? ? 1_555 B DC  11 O2 ? ? A DG  2  B DC  23 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A DG  2  O6    ? ? ? 1_555 B DC  11 N4 ? ? A DG  2  B DC  23 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A DC  3  N3    ? ? ? 1_555 B DG  10 N1 ? ? A DC  3  B DG  22 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A DC  3  N4    ? ? ? 1_555 B DG  10 O6 ? ? A DC  3  B DG  22 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A DC  3  O2    ? ? ? 1_555 B DG  10 N2 ? ? A DC  3  B DG  22 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A DG  4  N1    ? ? ? 1_555 B CBR 9  N3 ? ? A DG  4  B CBR 21 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?    ? A DG  4  N2    ? ? ? 1_555 B CBR 9  O2 ? ? A DG  4  B CBR 21 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?    ? A DG  4  O6    ? ? ? 1_555 B CBR 9  N4 ? ? A DG  4  B CBR 21 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?    ? A DA  5  N1    ? ? ? 1_555 B DT  8  N3 ? ? A DA  5  B DT  20 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?    ? A DA  5  N6    ? ? ? 1_555 B DT  8  O4 ? ? A DA  5  B DT  20 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?    ? A DA  6  N1    ? ? ? 1_555 B DT  7  N3 ? ? A DA  6  B DT  19 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?    ? A DA  6  N6    ? ? ? 1_555 B DT  7  O4 ? ? A DA  6  B DT  19 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?    ? A DT  7  N3    ? ? ? 1_555 B DA  6  N1 ? ? A DT  7  B DA  18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?    ? A DT  7  O4    ? ? ? 1_555 B DA  6  N6 ? ? A DT  7  B DA  18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ?    ? A DT  8  N3    ? ? ? 1_555 B DA  5  N1 ? ? A DT  8  B DA  17 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ?    ? A DT  8  O4    ? ? ? 1_555 B DA  5  N6 ? ? A DT  8  B DA  17 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ?    ? A CBR 9  N3    ? ? ? 1_555 B DG  4  N1 ? ? A CBR 9  B DG  16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ?    ? A CBR 9  N4    ? ? ? 1_555 B DG  4  O6 ? ? A CBR 9  B DG  16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ?    ? A CBR 9  O2    ? ? ? 1_555 B DG  4  N2 ? ? A CBR 9  B DG  16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ?    ? A DG  10 N1    ? ? ? 1_555 B DC  3  N3 ? ? A DG  10 B DC  15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog25 hydrog ?    ? A DG  10 N2    ? ? ? 1_555 B DC  3  O2 ? ? A DG  10 B DC  15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog26 hydrog ?    ? A DG  10 O6    ? ? ? 1_555 B DC  3  N4 ? ? A DG  10 B DC  15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog27 hydrog ?    ? A DC  11 N3    ? ? ? 1_555 B DG  2  N1 ? ? A DC  11 B DG  14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog28 hydrog ?    ? A DC  11 N4    ? ? ? 1_555 B DG  2  O6 ? ? A DC  11 B DG  14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog29 hydrog ?    ? A DC  11 O2    ? ? ? 1_555 B DG  2  N2 ? ? A DC  11 B DG  14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog30 hydrog ?    ? A DG  12 N1    ? ? ? 1_555 B DC  1  N3 ? ? A DG  12 B DC  13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog31 hydrog ?    ? A DG  12 N2    ? ? ? 1_555 B DC  1  O2 ? ? A DG  12 B DC  13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog32 hydrog ?    ? A DG  12 O6    ? ? ? 1_555 B DC  1  N4 ? ? A DG  12 B DC  13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
metalc ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software B NT 25 ? 9 'BINDING SITE FOR RESIDUE NT B 25' 
AC2 Software A MG 26 ? 3 'BINDING SITE FOR RESIDUE MG A 26' 
1   ?        ? ?  ?  ? ? ?                                  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 9 DA  A 6  ? DA  A 6  . ? 1_555 ? 
2  AC1 9 DT  A 7  ? DT  A 7  . ? 1_555 ? 
3  AC1 9 DT  A 8  ? DT  A 8  . ? 1_555 ? 
4  AC1 9 DA  B 5  ? DA  B 17 . ? 1_555 ? 
5  AC1 9 DA  B 6  ? DA  B 18 . ? 1_555 ? 
6  AC1 9 DT  B 7  ? DT  B 19 . ? 1_555 ? 
7  AC1 9 DT  B 8  ? DT  B 20 . ? 1_555 ? 
8  AC1 9 CBR B 9  ? CBR B 21 . ? 1_555 ? 
9  AC1 9 DG  B 10 ? DG  B 22 . ? 1_555 ? 
10 AC2 3 HOH E .  ? HOH A 61 . ? 1_555 ? 
11 AC2 3 HOH F .  ? HOH B 60 . ? 1_555 ? 
12 AC2 3 HOH F .  ? HOH B 62 . ? 1_555 ? 
# 
_database_PDB_matrix.entry_id          101D 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    101D 
_atom_sites.fract_transf_matrix[1][1]   0.041203 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.025240 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.015731 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
BR 
C  
MG 
N  
O  
P  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC  1  1  1  DC  C A . n 
A 1 2  DG  2  2  2  DG  G A . n 
A 1 3  DC  3  3  3  DC  C A . n 
A 1 4  DG  4  4  4  DG  G A . n 
A 1 5  DA  5  5  5  DA  A A . n 
A 1 6  DA  6  6  6  DA  A A . n 
A 1 7  DT  7  7  7  DT  T A . n 
A 1 8  DT  8  8  8  DT  T A . n 
A 1 9  CBR 9  9  9  CBR C A . n 
A 1 10 DG  10 10 10 DG  G A . n 
A 1 11 DC  11 11 11 DC  C A . n 
A 1 12 DG  12 12 12 DG  G A . n 
B 1 1  DC  1  13 13 DC  C B . n 
B 1 2  DG  2  14 14 DG  G B . n 
B 1 3  DC  3  15 15 DC  C B . n 
B 1 4  DG  4  16 16 DG  G B . n 
B 1 5  DA  5  17 17 DA  A B . n 
B 1 6  DA  6  18 18 DA  A B . n 
B 1 7  DT  7  19 19 DT  T B . n 
B 1 8  DT  8  20 20 DT  T B . n 
B 1 9  CBR 9  21 21 CBR C B . n 
B 1 10 DG  10 22 22 DG  G B . n 
B 1 11 DC  11 23 23 DC  C B . n 
B 1 12 DG  12 24 24 DG  G B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 MG  1  26 26 MG  MO3 A . 
D 3 NT  1  25 25 NT  NT  B . 
E 4 HOH 1  27 27 HOH HOH A . 
E 4 HOH 2  28 28 HOH HOH A . 
E 4 HOH 3  33 33 HOH HOH A . 
E 4 HOH 4  34 34 HOH HOH A . 
E 4 HOH 5  35 35 HOH HOH A . 
E 4 HOH 6  39 39 HOH HOH A . 
E 4 HOH 7  44 44 HOH HOH A . 
E 4 HOH 8  46 46 HOH HOH A . 
E 4 HOH 9  48 48 HOH HOH A . 
E 4 HOH 10 52 52 HOH HOH A . 
E 4 HOH 11 53 53 HOH HOH A . 
E 4 HOH 12 54 54 HOH HOH A . 
E 4 HOH 13 59 59 HOH HOH A . 
E 4 HOH 14 61 26 HOH MO3 A . 
F 4 HOH 1  29 29 HOH HOH B . 
F 4 HOH 2  30 30 HOH HOH B . 
F 4 HOH 3  31 31 HOH HOH B . 
F 4 HOH 4  32 32 HOH HOH B . 
F 4 HOH 5  36 36 HOH HOH B . 
F 4 HOH 6  37 37 HOH HOH B . 
F 4 HOH 7  38 38 HOH HOH B . 
F 4 HOH 8  40 40 HOH HOH B . 
F 4 HOH 9  41 41 HOH HOH B . 
F 4 HOH 10 42 42 HOH HOH B . 
F 4 HOH 11 43 43 HOH HOH B . 
F 4 HOH 12 45 45 HOH HOH B . 
F 4 HOH 13 47 47 HOH HOH B . 
F 4 HOH 14 49 49 HOH HOH B . 
F 4 HOH 15 50 50 HOH HOH B . 
F 4 HOH 16 51 51 HOH HOH B . 
F 4 HOH 17 55 55 HOH HOH B . 
F 4 HOH 18 56 56 HOH HOH B . 
F 4 HOH 19 57 57 HOH HOH B . 
F 4 HOH 20 58 58 HOH HOH B . 
F 4 HOH 21 60 26 HOH MO3 B . 
F 4 HOH 22 62 26 HOH MO3 B . 
# 
loop_
_pdbx_struct_mod_residue.id 
_pdbx_struct_mod_residue.label_asym_id 
_pdbx_struct_mod_residue.label_comp_id 
_pdbx_struct_mod_residue.label_seq_id 
_pdbx_struct_mod_residue.auth_asym_id 
_pdbx_struct_mod_residue.auth_comp_id 
_pdbx_struct_mod_residue.auth_seq_id 
_pdbx_struct_mod_residue.PDB_ins_code 
_pdbx_struct_mod_residue.parent_comp_id 
_pdbx_struct_mod_residue.details 
1 A CBR 9 A CBR 9  ? DC ? 
2 B CBR 9 B CBR 21 ? DC ? 
# 
_struct_site_keywords.site_id   1 
_struct_site_keywords.text      'MINOR GROOVE BINDER' 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1 O ? E HOH . ? A HOH 61 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 60 ? 1_555 88.3 ? 
2 O ? E HOH . ? A HOH 61 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 62 ? 1_555 76.9 ? 
3 O ? F HOH . ? B HOH 60 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 62 ? 1_555 80.2 ? 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1995-02-27 
2 'Structure model' 1 1 2008-05-22 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2023-11-22 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Data collection'           
4 4 'Structure model' 'Database references'       
5 4 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' chem_comp_atom         
2 4 'Structure model' chem_comp_bond         
3 4 'Structure model' database_2             
4 4 'Structure model' pdbx_struct_conn_angle 
5 4 'Structure model' struct_conn            
6 4 'Structure model' struct_conn_type       
7 4 'Structure model' struct_site            
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  4 'Structure model' '_database_2.pdbx_DOI'                        
2  4 'Structure model' '_database_2.pdbx_database_accession'         
3  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'  
4  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
5  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 
6  4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'  
7  4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
8  4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
9  4 'Structure model' '_pdbx_struct_conn_angle.value'               
10 4 'Structure model' '_struct_conn.conn_type_id'                   
11 4 'Structure model' '_struct_conn.id'                             
12 4 'Structure model' '_struct_conn.pdbx_dist_value'                
13 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'         
14 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id'             
15 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'             
16 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'              
17 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'            
18 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'            
19 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'            
20 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'             
21 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id'             
22 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'             
23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
25 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'            
26 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'            
27 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'             
28 4 'Structure model' '_struct_conn_type.id'                        
29 4 'Structure model' '_struct_site.pdbx_auth_asym_id'              
30 4 'Structure model' '_struct_site.pdbx_auth_comp_id'              
31 4 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
loop_
_refine_B_iso.class 
_refine_B_iso.details 
_refine_B_iso.treatment 
_refine_B_iso.pdbx_refine_id 
'ALL ATOMS'  TR isotropic 'X-RAY DIFFRACTION' 
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' 
# 
loop_
_refine_occupancy.class 
_refine_occupancy.treatment 
_refine_occupancy.pdbx_refine_id 
'ALL ATOMS'  fix 'X-RAY DIFFRACTION' 
'ALL WATERS' fix 'X-RAY DIFFRACTION' 
# 
_software.name             NUCLSQ 
_software.classification   refinement 
_software.version          . 
_software.citation_id      ? 
_software.pdbx_ordinal     1 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1  1 "C2'" A DC 1  ? ? "C1'" A DC 1  ? ? 1.449 1.518 -0.069 0.010 N 
2  1 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? 1.488 1.420 0.068  0.011 N 
3  1 "O4'" A DC 1  ? ? "C4'" A DC 1  ? ? 1.375 1.446 -0.071 0.010 N 
4  1 N7    A DG 2  ? ? C8    A DG 2  ? ? 1.267 1.305 -0.038 0.006 N 
5  1 "C2'" A DC 3  ? ? "C1'" A DC 3  ? ? 1.451 1.518 -0.067 0.010 N 
6  1 "C4'" A DG 4  ? ? "C3'" A DG 4  ? ? 1.590 1.529 0.061  0.010 N 
7  1 "C2'" A DA 6  ? ? "C1'" A DA 6  ? ? 1.428 1.518 -0.090 0.010 N 
8  1 "O4'" A DT 7  ? ? "C1'" A DT 7  ? ? 1.487 1.420 0.067  0.011 N 
9  1 "O4'" A DT 7  ? ? "C4'" A DT 7  ? ? 1.382 1.446 -0.064 0.010 N 
10 1 "O4'" A DT 8  ? ? "C1'" A DT 8  ? ? 1.492 1.420 0.072  0.011 N 
11 1 "O3'" A DT 8  ? ? "C3'" A DT 8  ? ? 1.381 1.419 -0.038 0.006 N 
12 1 "C2'" A DC 11 ? ? "C1'" A DC 11 ? ? 1.449 1.518 -0.069 0.010 N 
13 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? 1.503 1.420 0.083  0.011 N 
14 1 "C5'" B DG 14 ? ? "C4'" B DG 14 ? ? 1.562 1.512 0.050  0.007 N 
15 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? 1.488 1.420 0.068  0.011 N 
16 1 "O3'" B DC 15 ? ? "C3'" B DC 15 ? ? 1.380 1.419 -0.039 0.006 N 
17 1 N7    B DA 17 ? ? C8    B DA 17 ? ? 1.255 1.311 -0.056 0.007 N 
18 1 "O3'" B DT 19 ? ? "C3'" B DT 19 ? ? 1.356 1.419 -0.063 0.006 N 
19 1 "C2'" B DT 20 ? ? "C1'" B DT 20 ? ? 1.449 1.518 -0.069 0.010 N 
20 1 "O4'" B DG 24 ? ? "C4'" B DG 24 ? ? 1.375 1.446 -0.071 0.010 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "C5'" A DC  1  ? ? "C4'" A DC  1  ? ? "O4'" A DC  1  ? ? 119.48 109.80 9.68   1.10 N 
2  1 C2    A DC  1  ? ? N3    A DC  1  ? ? C4    A DC  1  ? ? 124.02 119.90 4.12   0.50 N 
3  1 N3    A DC  1  ? ? C4    A DC  1  ? ? C5    A DC  1  ? ? 116.72 121.90 -5.18  0.40 N 
4  1 C5    A DC  1  ? ? C4    A DC  1  ? ? N4    A DC  1  ? ? 127.60 120.20 7.40   0.70 N 
5  1 OP1   A DG  2  ? ? P     A DG  2  ? ? OP2   A DG  2  ? ? 108.98 119.60 -10.62 1.50 N 
6  1 "O5'" A DG  2  ? ? "C5'" A DG  2  ? ? "C4'" A DG  2  ? ? 103.90 109.40 -5.50  0.80 N 
7  1 "C3'" A DG  2  ? ? "O3'" A DG  2  ? ? P     A DC  3  ? ? 138.86 119.70 19.16  1.20 Y 
8  1 N3    A DC  3  ? ? C4    A DC  3  ? ? C5    A DC  3  ? ? 119.35 121.90 -2.55  0.40 N 
9  1 "C5'" A DG  4  ? ? "C4'" A DG  4  ? ? "O4'" A DG  4  ? ? 122.05 109.80 12.25  1.10 N 
10 1 "O4'" A DG  4  ? ? "C1'" A DG  4  ? ? N9    A DG  4  ? ? 115.09 108.30 6.79   0.30 N 
11 1 C6    A DG  4  ? ? N1    A DG  4  ? ? C2    A DG  4  ? ? 120.37 125.10 -4.73  0.60 N 
12 1 N1    A DG  4  ? ? C2    A DG  4  ? ? N3    A DG  4  ? ? 128.56 123.90 4.66   0.60 N 
13 1 C5    A DG  4  ? ? C6    A DG  4  ? ? N1    A DG  4  ? ? 115.37 111.50 3.87   0.50 N 
14 1 N3    A DG  4  ? ? C2    A DG  4  ? ? N2    A DG  4  ? ? 114.62 119.90 -5.28  0.70 N 
15 1 C5    A DG  4  ? ? C6    A DG  4  ? ? O6    A DG  4  ? ? 124.91 128.60 -3.69  0.60 N 
16 1 C6    A DA  5  ? ? N1    A DA  5  ? ? C2    A DA  5  ? ? 122.60 118.60 4.00   0.60 N 
17 1 N1    A DA  5  ? ? C2    A DA  5  ? ? N3    A DA  5  ? ? 126.15 129.30 -3.15  0.50 N 
18 1 "C3'" A DA  5  ? ? "O3'" A DA  5  ? ? P     A DA  6  ? ? 128.38 119.70 8.68   1.20 Y 
19 1 "O4'" A DA  6  ? ? "C1'" A DA  6  ? ? N9    A DA  6  ? ? 102.48 108.00 -5.52  0.70 N 
20 1 C6    A DA  6  ? ? N1    A DA  6  ? ? C2    A DA  6  ? ? 122.56 118.60 3.96   0.60 N 
21 1 C5    A DA  6  ? ? C6    A DA  6  ? ? N1    A DA  6  ? ? 114.65 117.70 -3.05  0.50 N 
22 1 "C3'" A DA  6  ? ? "O3'" A DA  6  ? ? P     A DT  7  ? ? 129.79 119.70 10.09  1.20 Y 
23 1 OP1   A DT  7  ? ? P     A DT  7  ? ? OP2   A DT  7  ? ? 106.18 119.60 -13.42 1.50 N 
24 1 "O5'" A DT  7  ? ? P     A DT  7  ? ? OP2   A DT  7  ? ? 119.22 110.70 8.52   1.20 N 
25 1 "O5'" A DT  7  ? ? "C5'" A DT  7  ? ? "C4'" A DT  7  ? ? 101.75 109.40 -7.65  0.80 N 
26 1 "O4'" A DT  7  ? ? "C1'" A DT  7  ? ? "C2'" A DT  7  ? ? 99.97  105.90 -5.93  0.80 N 
27 1 C2    A DT  7  ? ? N3    A DT  7  ? ? C4    A DT  7  ? ? 120.60 127.20 -6.60  0.60 N 
28 1 N3    A DT  7  ? ? C4    A DT  7  ? ? C5    A DT  7  ? ? 120.83 115.20 5.63   0.60 N 
29 1 "C3'" A DT  7  ? ? "O3'" A DT  7  ? ? P     A DT  8  ? ? 134.41 119.70 14.71  1.20 Y 
30 1 N1    A DT  8  ? ? C2    A DT  8  ? ? N3    A DT  8  ? ? 118.54 114.60 3.94   0.60 N 
31 1 C2    A DT  8  ? ? N3    A DT  8  ? ? C4    A DT  8  ? ? 122.60 127.20 -4.60  0.60 N 
32 1 N3    A DT  8  ? ? C4    A DT  8  ? ? C5    A DT  8  ? ? 118.82 115.20 3.62   0.60 N 
33 1 N3    A DT  8  ? ? C4    A DT  8  ? ? O4    A DT  8  ? ? 116.08 119.90 -3.82  0.60 N 
34 1 "C3'" A DT  8  ? ? "O3'" A DT  8  ? ? P     A CBR 9  ? ? 143.72 119.70 24.02  1.20 Y 
35 1 "C3'" A CBR 9  ? ? "O3'" A CBR 9  ? ? P     A DG  10 ? ? 135.33 119.70 15.63  1.20 Y 
36 1 OP1   A DG  10 ? ? P     A DG  10 ? ? OP2   A DG  10 ? ? 108.87 119.60 -10.73 1.50 N 
37 1 P     A DG  10 ? ? "O5'" A DG  10 ? ? "C5'" A DG  10 ? ? 139.23 120.90 18.33  1.60 N 
38 1 "O4'" A DG  10 ? ? "C1'" A DG  10 ? ? N9    A DG  10 ? ? 111.05 108.30 2.75   0.30 N 
39 1 C6    A DG  10 ? ? N1    A DG  10 ? ? C2    A DG  10 ? ? 120.34 125.10 -4.76  0.60 N 
40 1 N1    A DG  10 ? ? C2    A DG  10 ? ? N3    A DG  10 ? ? 127.91 123.90 4.01   0.60 N 
41 1 C5    A DG  10 ? ? C6    A DG  10 ? ? N1    A DG  10 ? ? 115.39 111.50 3.89   0.50 N 
42 1 "C3'" A DG  10 ? ? "O3'" A DG  10 ? ? P     A DC  11 ? ? 131.76 119.70 12.06  1.20 Y 
43 1 OP1   A DC  11 ? ? P     A DC  11 ? ? OP2   A DC  11 ? ? 109.61 119.60 -9.99  1.50 N 
44 1 "O4'" A DC  11 ? ? "C1'" A DC  11 ? ? N1    A DC  11 ? ? 103.15 108.00 -4.85  0.70 N 
45 1 OP1   A DG  12 ? ? P     A DG  12 ? ? OP2   A DG  12 ? ? 106.58 119.60 -13.02 1.50 N 
46 1 "O5'" A DG  12 ? ? "C5'" A DG  12 ? ? "C4'" A DG  12 ? ? 101.22 109.40 -8.18  0.80 N 
47 1 "O4'" A DG  12 ? ? "C1'" A DG  12 ? ? "C2'" A DG  12 ? ? 110.51 106.80 3.71   0.50 N 
48 1 C2    A DG  12 ? ? N3    A DG  12 ? ? C4    A DG  12 ? ? 115.23 111.90 3.33   0.50 N 
49 1 "O5'" B DC  13 ? ? "C5'" B DC  13 ? ? "C4'" B DC  13 ? ? 104.48 109.40 -4.92  0.80 N 
50 1 N3    B DC  13 ? ? C4    B DC  13 ? ? C5    B DC  13 ? ? 119.44 121.90 -2.46  0.40 N 
51 1 N1    B DC  13 ? ? C2    B DC  13 ? ? O2    B DC  13 ? ? 122.71 118.90 3.81   0.60 N 
52 1 "O5'" B DG  14 ? ? "C5'" B DG  14 ? ? "C4'" B DG  14 ? ? 103.14 109.40 -6.26  0.80 N 
53 1 "O4'" B DG  14 ? ? "C4'" B DG  14 ? ? "C3'" B DG  14 ? ? 110.28 106.00 4.28   0.60 N 
54 1 "C1'" B DG  14 ? ? "O4'" B DG  14 ? ? "C4'" B DG  14 ? ? 104.02 110.10 -6.08  1.00 N 
55 1 "C3'" B DG  14 ? ? "O3'" B DG  14 ? ? P     B DC  15 ? ? 133.59 119.70 13.89  1.20 Y 
56 1 "O4'" B DC  15 ? ? "C1'" B DC  15 ? ? N1    B DC  15 ? ? 110.22 108.30 1.92   0.30 N 
57 1 "C3'" B DC  15 ? ? "O3'" B DC  15 ? ? P     B DG  16 ? ? 141.58 119.70 21.88  1.20 Y 
58 1 "C3'" B DG  16 ? ? "C2'" B DG  16 ? ? "C1'" B DG  16 ? ? 96.85  102.40 -5.55  0.80 N 
59 1 "O4'" B DG  16 ? ? "C1'" B DG  16 ? ? N9    B DG  16 ? ? 111.00 108.30 2.70   0.30 N 
60 1 C6    B DG  16 ? ? N1    B DG  16 ? ? C2    B DG  16 ? ? 120.16 125.10 -4.94  0.60 N 
61 1 C5    B DG  16 ? ? C6    B DG  16 ? ? N1    B DG  16 ? ? 115.49 111.50 3.99   0.50 N 
62 1 OP1   B DA  17 ? ? P     B DA  17 ? ? OP2   B DA  17 ? ? 108.24 119.60 -11.36 1.50 N 
63 1 "O5'" B DA  17 ? ? P     B DA  17 ? ? OP2   B DA  17 ? ? 122.68 110.70 11.98  1.20 N 
64 1 C6    B DA  17 ? ? N1    B DA  17 ? ? C2    B DA  17 ? ? 125.45 118.60 6.85   0.60 N 
65 1 N1    B DA  17 ? ? C2    B DA  17 ? ? N3    B DA  17 ? ? 123.75 129.30 -5.55  0.50 N 
66 1 C5    B DA  17 ? ? C6    B DA  17 ? ? N1    B DA  17 ? ? 113.62 117.70 -4.08  0.50 N 
67 1 N1    B DA  17 ? ? C6    B DA  17 ? ? N6    B DA  17 ? ? 122.53 118.60 3.93   0.60 N 
68 1 "O5'" B DA  18 ? ? P     B DA  18 ? ? OP1   B DA  18 ? ? 120.76 110.70 10.06  1.20 N 
69 1 "C5'" B DA  18 ? ? "C4'" B DA  18 ? ? "C3'" B DA  18 ? ? 127.76 115.70 12.06  1.20 N 
70 1 C6    B DA  18 ? ? N1    B DA  18 ? ? C2    B DA  18 ? ? 123.80 118.60 5.20   0.60 N 
71 1 N1    B DA  18 ? ? C2    B DA  18 ? ? N3    B DA  18 ? ? 123.47 129.30 -5.83  0.50 N 
72 1 C5    B DA  18 ? ? C6    B DA  18 ? ? N1    B DA  18 ? ? 114.09 117.70 -3.61  0.50 N 
73 1 N1    B DA  18 ? ? C6    B DA  18 ? ? N6    B DA  18 ? ? 126.04 118.60 7.44   0.60 N 
74 1 "O5'" B DT  19 ? ? "C5'" B DT  19 ? ? "C4'" B DT  19 ? ? 103.70 109.40 -5.70  0.80 N 
75 1 "C1'" B DT  19 ? ? "O4'" B DT  19 ? ? "C4'" B DT  19 ? ? 102.31 110.10 -7.79  1.00 N 
76 1 C2    B DT  19 ? ? N3    B DT  19 ? ? C4    B DT  19 ? ? 122.67 127.20 -4.53  0.60 N 
77 1 N3    B DT  19 ? ? C4    B DT  19 ? ? O4    B DT  19 ? ? 113.72 119.90 -6.18  0.60 N 
78 1 "C3'" B DT  19 ? ? "O3'" B DT  19 ? ? P     B DT  20 ? ? 141.98 119.70 22.28  1.20 Y 
79 1 "O3'" B DT  19 ? ? P     B DT  20 ? ? "O5'" B DT  20 ? ? 115.71 104.00 11.71  1.90 Y 
80 1 "C1'" B DT  20 ? ? "O4'" B DT  20 ? ? "C4'" B DT  20 ? ? 103.78 110.10 -6.32  1.00 N 
81 1 C2    B DT  20 ? ? N3    B DT  20 ? ? C4    B DT  20 ? ? 122.28 127.20 -4.92  0.60 N 
82 1 N3    B DT  20 ? ? C4    B DT  20 ? ? C5    B DT  20 ? ? 120.37 115.20 5.17   0.60 N 
83 1 N3    B DT  20 ? ? C4    B DT  20 ? ? O4    B DT  20 ? ? 113.34 119.90 -6.56  0.60 N 
84 1 "C3'" B DT  20 ? ? "O3'" B DT  20 ? ? P     B CBR 21 ? ? 130.17 119.70 10.47  1.20 Y 
85 1 "C3'" B CBR 21 ? ? "O3'" B CBR 21 ? ? P     B DG  22 ? ? 127.11 119.70 7.41   1.20 Y 
86 1 "C3'" B DG  22 ? ? "C2'" B DG  22 ? ? "C1'" B DG  22 ? ? 94.33  102.40 -8.07  0.80 N 
87 1 "O4'" B DG  22 ? ? "C1'" B DG  22 ? ? N9    B DG  22 ? ? 112.83 108.30 4.53   0.30 N 
88 1 N3    B DG  22 ? ? C2    B DG  22 ? ? N2    B DG  22 ? ? 115.01 119.90 -4.89  0.70 N 
89 1 C5    B DG  22 ? ? C6    B DG  22 ? ? O6    B DG  22 ? ? 124.19 128.60 -4.41  0.60 N 
90 1 "O4'" B DC  23 ? ? "C1'" B DC  23 ? ? N1    B DC  23 ? ? 101.80 108.00 -6.20  0.70 N 
91 1 C2    B DC  23 ? ? N3    B DC  23 ? ? C4    B DC  23 ? ? 124.31 119.90 4.41   0.50 N 
92 1 N3    B DC  23 ? ? C4    B DC  23 ? ? C5    B DC  23 ? ? 117.65 121.90 -4.25  0.40 N 
93 1 P     B DG  24 ? ? "O5'" B DG  24 ? ? "C5'" B DG  24 ? ? 137.28 120.90 16.38  1.60 N 
94 1 "O4'" B DG  24 ? ? "C1'" B DG  24 ? ? N9    B DG  24 ? ? 103.32 108.00 -4.68  0.70 N 
95 1 N1    B DG  24 ? ? C2    B DG  24 ? ? N2    B DG  24 ? ? 110.26 116.20 -5.94  0.90 N 
96 1 N3    B DG  24 ? ? C2    B DG  24 ? ? N2    B DG  24 ? ? 124.16 119.90 4.26   0.70 N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
CBR BR     BR N N 1   
CBR P      P  N N 2   
CBR OP1    O  N N 3   
CBR OP2    O  N N 4   
CBR "O5'"  O  N N 5   
CBR N1     N  N N 6   
CBR C6     C  N N 7   
CBR C2     C  N N 8   
CBR O2     O  N N 9   
CBR N3     N  N N 10  
CBR C4     C  N N 11  
CBR N4     N  N N 12  
CBR C5     C  N N 13  
CBR "C2'"  C  N N 14  
CBR "C5'"  C  N N 15  
CBR "C4'"  C  N R 16  
CBR "O4'"  O  N N 17  
CBR "C1'"  C  N R 18  
CBR "C3'"  C  N S 19  
CBR "O3'"  O  N N 20  
CBR OP3    O  N N 21  
CBR HOP2   H  N N 22  
CBR H6     H  N N 23  
CBR H41    H  N N 24  
CBR H42    H  N N 25  
CBR "H2'"  H  N N 26  
CBR "H2''" H  N N 27  
CBR "H5'"  H  N N 28  
CBR "H5''" H  N N 29  
CBR "H4'"  H  N N 30  
CBR "H1'"  H  N N 31  
CBR "H3'"  H  N N 32  
CBR "HO3'" H  N N 33  
CBR HOP3   H  N N 34  
DA  OP3    O  N N 35  
DA  P      P  N N 36  
DA  OP1    O  N N 37  
DA  OP2    O  N N 38  
DA  "O5'"  O  N N 39  
DA  "C5'"  C  N N 40  
DA  "C4'"  C  N R 41  
DA  "O4'"  O  N N 42  
DA  "C3'"  C  N S 43  
DA  "O3'"  O  N N 44  
DA  "C2'"  C  N N 45  
DA  "C1'"  C  N R 46  
DA  N9     N  Y N 47  
DA  C8     C  Y N 48  
DA  N7     N  Y N 49  
DA  C5     C  Y N 50  
DA  C6     C  Y N 51  
DA  N6     N  N N 52  
DA  N1     N  Y N 53  
DA  C2     C  Y N 54  
DA  N3     N  Y N 55  
DA  C4     C  Y N 56  
DA  HOP3   H  N N 57  
DA  HOP2   H  N N 58  
DA  "H5'"  H  N N 59  
DA  "H5''" H  N N 60  
DA  "H4'"  H  N N 61  
DA  "H3'"  H  N N 62  
DA  "HO3'" H  N N 63  
DA  "H2'"  H  N N 64  
DA  "H2''" H  N N 65  
DA  "H1'"  H  N N 66  
DA  H8     H  N N 67  
DA  H61    H  N N 68  
DA  H62    H  N N 69  
DA  H2     H  N N 70  
DC  OP3    O  N N 71  
DC  P      P  N N 72  
DC  OP1    O  N N 73  
DC  OP2    O  N N 74  
DC  "O5'"  O  N N 75  
DC  "C5'"  C  N N 76  
DC  "C4'"  C  N R 77  
DC  "O4'"  O  N N 78  
DC  "C3'"  C  N S 79  
DC  "O3'"  O  N N 80  
DC  "C2'"  C  N N 81  
DC  "C1'"  C  N R 82  
DC  N1     N  N N 83  
DC  C2     C  N N 84  
DC  O2     O  N N 85  
DC  N3     N  N N 86  
DC  C4     C  N N 87  
DC  N4     N  N N 88  
DC  C5     C  N N 89  
DC  C6     C  N N 90  
DC  HOP3   H  N N 91  
DC  HOP2   H  N N 92  
DC  "H5'"  H  N N 93  
DC  "H5''" H  N N 94  
DC  "H4'"  H  N N 95  
DC  "H3'"  H  N N 96  
DC  "HO3'" H  N N 97  
DC  "H2'"  H  N N 98  
DC  "H2''" H  N N 99  
DC  "H1'"  H  N N 100 
DC  H41    H  N N 101 
DC  H42    H  N N 102 
DC  H5     H  N N 103 
DC  H6     H  N N 104 
DG  OP3    O  N N 105 
DG  P      P  N N 106 
DG  OP1    O  N N 107 
DG  OP2    O  N N 108 
DG  "O5'"  O  N N 109 
DG  "C5'"  C  N N 110 
DG  "C4'"  C  N R 111 
DG  "O4'"  O  N N 112 
DG  "C3'"  C  N S 113 
DG  "O3'"  O  N N 114 
DG  "C2'"  C  N N 115 
DG  "C1'"  C  N R 116 
DG  N9     N  Y N 117 
DG  C8     C  Y N 118 
DG  N7     N  Y N 119 
DG  C5     C  Y N 120 
DG  C6     C  N N 121 
DG  O6     O  N N 122 
DG  N1     N  N N 123 
DG  C2     C  N N 124 
DG  N2     N  N N 125 
DG  N3     N  N N 126 
DG  C4     C  Y N 127 
DG  HOP3   H  N N 128 
DG  HOP2   H  N N 129 
DG  "H5'"  H  N N 130 
DG  "H5''" H  N N 131 
DG  "H4'"  H  N N 132 
DG  "H3'"  H  N N 133 
DG  "HO3'" H  N N 134 
DG  "H2'"  H  N N 135 
DG  "H2''" H  N N 136 
DG  "H1'"  H  N N 137 
DG  H8     H  N N 138 
DG  H1     H  N N 139 
DG  H21    H  N N 140 
DG  H22    H  N N 141 
DT  OP3    O  N N 142 
DT  P      P  N N 143 
DT  OP1    O  N N 144 
DT  OP2    O  N N 145 
DT  "O5'"  O  N N 146 
DT  "C5'"  C  N N 147 
DT  "C4'"  C  N R 148 
DT  "O4'"  O  N N 149 
DT  "C3'"  C  N S 150 
DT  "O3'"  O  N N 151 
DT  "C2'"  C  N N 152 
DT  "C1'"  C  N R 153 
DT  N1     N  N N 154 
DT  C2     C  N N 155 
DT  O2     O  N N 156 
DT  N3     N  N N 157 
DT  C4     C  N N 158 
DT  O4     O  N N 159 
DT  C5     C  N N 160 
DT  C7     C  N N 161 
DT  C6     C  N N 162 
DT  HOP3   H  N N 163 
DT  HOP2   H  N N 164 
DT  "H5'"  H  N N 165 
DT  "H5''" H  N N 166 
DT  "H4'"  H  N N 167 
DT  "H3'"  H  N N 168 
DT  "HO3'" H  N N 169 
DT  "H2'"  H  N N 170 
DT  "H2''" H  N N 171 
DT  "H1'"  H  N N 172 
DT  H3     H  N N 173 
DT  H71    H  N N 174 
DT  H72    H  N N 175 
DT  H73    H  N N 176 
DT  H6     H  N N 177 
HOH O      O  N N 178 
HOH H1     H  N N 179 
HOH H2     H  N N 180 
MG  MG     MG N N 181 
NT  C1     C  N N 182 
NT  N1     N  N N 183 
NT  N2     N  N N 184 
NT  N3     N  N N 185 
NT  C2     C  N N 186 
NT  C3     C  N N 187 
NT  O1     O  N N 188 
NT  N4     N  N N 189 
NT  C4     C  Y N 190 
NT  C5     C  Y N 191 
NT  C6     C  Y N 192 
NT  N5     N  Y N 193 
NT  C8     C  N N 194 
NT  C7     C  Y N 195 
NT  C9     C  N N 196 
NT  O2     O  N N 197 
NT  N6     N  N N 198 
NT  C10    C  Y N 199 
NT  C11    C  Y N 200 
NT  C12    C  Y N 201 
NT  N7     N  Y N 202 
NT  C14    C  N N 203 
NT  C13    C  Y N 204 
NT  C15    C  N N 205 
NT  O3     O  N N 206 
NT  N8     N  N N 207 
NT  C16    C  N N 208 
NT  C17    C  N N 209 
NT  C18    C  N N 210 
NT  N9     N  N N 211 
NT  N10    N  N N 212 
NT  HN1    H  N N 213 
NT  HN21   H  N N 214 
NT  HN22   H  N N 215 
NT  HN3    H  N N 216 
NT  H21    H  N N 217 
NT  H22    H  N N 218 
NT  HN4    H  N N 219 
NT  H5     H  N N 220 
NT  H81    H  N N 221 
NT  H82    H  N N 222 
NT  H83    H  N N 223 
NT  H7     H  N N 224 
NT  HN6    H  N N 225 
NT  H11    H  N N 226 
NT  H141   H  N N 227 
NT  H142   H  N N 228 
NT  H143   H  N N 229 
NT  H13    H  N N 230 
NT  HN8    H  N N 231 
NT  H161   H  N N 232 
NT  H162   H  N N 233 
NT  H171   H  N N 234 
NT  H172   H  N N 235 
NT  HN9    H  N N 236 
NT  HN01   H  N N 237 
NT  HN02   H  N N 238 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CBR BR    C5     sing N N 1   
CBR P     OP1    doub N N 2   
CBR P     OP2    sing N N 3   
CBR P     "O5'"  sing N N 4   
CBR P     OP3    sing N N 5   
CBR OP2   HOP2   sing N N 6   
CBR "O5'" "C5'"  sing N N 7   
CBR N1    C6     sing N N 8   
CBR N1    C2     sing N N 9   
CBR N1    "C1'"  sing N N 10  
CBR C6    C5     doub N N 11  
CBR C6    H6     sing N N 12  
CBR C2    O2     doub N N 13  
CBR C2    N3     sing N N 14  
CBR N3    C4     doub N N 15  
CBR C4    N4     sing N N 16  
CBR C4    C5     sing N N 17  
CBR N4    H41    sing N N 18  
CBR N4    H42    sing N N 19  
CBR "C2'" "C1'"  sing N N 20  
CBR "C2'" "C3'"  sing N N 21  
CBR "C2'" "H2'"  sing N N 22  
CBR "C2'" "H2''" sing N N 23  
CBR "C5'" "C4'"  sing N N 24  
CBR "C5'" "H5'"  sing N N 25  
CBR "C5'" "H5''" sing N N 26  
CBR "C4'" "O4'"  sing N N 27  
CBR "C4'" "C3'"  sing N N 28  
CBR "C4'" "H4'"  sing N N 29  
CBR "O4'" "C1'"  sing N N 30  
CBR "C1'" "H1'"  sing N N 31  
CBR "C3'" "O3'"  sing N N 32  
CBR "C3'" "H3'"  sing N N 33  
CBR "O3'" "HO3'" sing N N 34  
CBR OP3   HOP3   sing N N 35  
DA  OP3   P      sing N N 36  
DA  OP3   HOP3   sing N N 37  
DA  P     OP1    doub N N 38  
DA  P     OP2    sing N N 39  
DA  P     "O5'"  sing N N 40  
DA  OP2   HOP2   sing N N 41  
DA  "O5'" "C5'"  sing N N 42  
DA  "C5'" "C4'"  sing N N 43  
DA  "C5'" "H5'"  sing N N 44  
DA  "C5'" "H5''" sing N N 45  
DA  "C4'" "O4'"  sing N N 46  
DA  "C4'" "C3'"  sing N N 47  
DA  "C4'" "H4'"  sing N N 48  
DA  "O4'" "C1'"  sing N N 49  
DA  "C3'" "O3'"  sing N N 50  
DA  "C3'" "C2'"  sing N N 51  
DA  "C3'" "H3'"  sing N N 52  
DA  "O3'" "HO3'" sing N N 53  
DA  "C2'" "C1'"  sing N N 54  
DA  "C2'" "H2'"  sing N N 55  
DA  "C2'" "H2''" sing N N 56  
DA  "C1'" N9     sing N N 57  
DA  "C1'" "H1'"  sing N N 58  
DA  N9    C8     sing Y N 59  
DA  N9    C4     sing Y N 60  
DA  C8    N7     doub Y N 61  
DA  C8    H8     sing N N 62  
DA  N7    C5     sing Y N 63  
DA  C5    C6     sing Y N 64  
DA  C5    C4     doub Y N 65  
DA  C6    N6     sing N N 66  
DA  C6    N1     doub Y N 67  
DA  N6    H61    sing N N 68  
DA  N6    H62    sing N N 69  
DA  N1    C2     sing Y N 70  
DA  C2    N3     doub Y N 71  
DA  C2    H2     sing N N 72  
DA  N3    C4     sing Y N 73  
DC  OP3   P      sing N N 74  
DC  OP3   HOP3   sing N N 75  
DC  P     OP1    doub N N 76  
DC  P     OP2    sing N N 77  
DC  P     "O5'"  sing N N 78  
DC  OP2   HOP2   sing N N 79  
DC  "O5'" "C5'"  sing N N 80  
DC  "C5'" "C4'"  sing N N 81  
DC  "C5'" "H5'"  sing N N 82  
DC  "C5'" "H5''" sing N N 83  
DC  "C4'" "O4'"  sing N N 84  
DC  "C4'" "C3'"  sing N N 85  
DC  "C4'" "H4'"  sing N N 86  
DC  "O4'" "C1'"  sing N N 87  
DC  "C3'" "O3'"  sing N N 88  
DC  "C3'" "C2'"  sing N N 89  
DC  "C3'" "H3'"  sing N N 90  
DC  "O3'" "HO3'" sing N N 91  
DC  "C2'" "C1'"  sing N N 92  
DC  "C2'" "H2'"  sing N N 93  
DC  "C2'" "H2''" sing N N 94  
DC  "C1'" N1     sing N N 95  
DC  "C1'" "H1'"  sing N N 96  
DC  N1    C2     sing N N 97  
DC  N1    C6     sing N N 98  
DC  C2    O2     doub N N 99  
DC  C2    N3     sing N N 100 
DC  N3    C4     doub N N 101 
DC  C4    N4     sing N N 102 
DC  C4    C5     sing N N 103 
DC  N4    H41    sing N N 104 
DC  N4    H42    sing N N 105 
DC  C5    C6     doub N N 106 
DC  C5    H5     sing N N 107 
DC  C6    H6     sing N N 108 
DG  OP3   P      sing N N 109 
DG  OP3   HOP3   sing N N 110 
DG  P     OP1    doub N N 111 
DG  P     OP2    sing N N 112 
DG  P     "O5'"  sing N N 113 
DG  OP2   HOP2   sing N N 114 
DG  "O5'" "C5'"  sing N N 115 
DG  "C5'" "C4'"  sing N N 116 
DG  "C5'" "H5'"  sing N N 117 
DG  "C5'" "H5''" sing N N 118 
DG  "C4'" "O4'"  sing N N 119 
DG  "C4'" "C3'"  sing N N 120 
DG  "C4'" "H4'"  sing N N 121 
DG  "O4'" "C1'"  sing N N 122 
DG  "C3'" "O3'"  sing N N 123 
DG  "C3'" "C2'"  sing N N 124 
DG  "C3'" "H3'"  sing N N 125 
DG  "O3'" "HO3'" sing N N 126 
DG  "C2'" "C1'"  sing N N 127 
DG  "C2'" "H2'"  sing N N 128 
DG  "C2'" "H2''" sing N N 129 
DG  "C1'" N9     sing N N 130 
DG  "C1'" "H1'"  sing N N 131 
DG  N9    C8     sing Y N 132 
DG  N9    C4     sing Y N 133 
DG  C8    N7     doub Y N 134 
DG  C8    H8     sing N N 135 
DG  N7    C5     sing Y N 136 
DG  C5    C6     sing N N 137 
DG  C5    C4     doub Y N 138 
DG  C6    O6     doub N N 139 
DG  C6    N1     sing N N 140 
DG  N1    C2     sing N N 141 
DG  N1    H1     sing N N 142 
DG  C2    N2     sing N N 143 
DG  C2    N3     doub N N 144 
DG  N2    H21    sing N N 145 
DG  N2    H22    sing N N 146 
DG  N3    C4     sing N N 147 
DT  OP3   P      sing N N 148 
DT  OP3   HOP3   sing N N 149 
DT  P     OP1    doub N N 150 
DT  P     OP2    sing N N 151 
DT  P     "O5'"  sing N N 152 
DT  OP2   HOP2   sing N N 153 
DT  "O5'" "C5'"  sing N N 154 
DT  "C5'" "C4'"  sing N N 155 
DT  "C5'" "H5'"  sing N N 156 
DT  "C5'" "H5''" sing N N 157 
DT  "C4'" "O4'"  sing N N 158 
DT  "C4'" "C3'"  sing N N 159 
DT  "C4'" "H4'"  sing N N 160 
DT  "O4'" "C1'"  sing N N 161 
DT  "C3'" "O3'"  sing N N 162 
DT  "C3'" "C2'"  sing N N 163 
DT  "C3'" "H3'"  sing N N 164 
DT  "O3'" "HO3'" sing N N 165 
DT  "C2'" "C1'"  sing N N 166 
DT  "C2'" "H2'"  sing N N 167 
DT  "C2'" "H2''" sing N N 168 
DT  "C1'" N1     sing N N 169 
DT  "C1'" "H1'"  sing N N 170 
DT  N1    C2     sing N N 171 
DT  N1    C6     sing N N 172 
DT  C2    O2     doub N N 173 
DT  C2    N3     sing N N 174 
DT  N3    C4     sing N N 175 
DT  N3    H3     sing N N 176 
DT  C4    O4     doub N N 177 
DT  C4    C5     sing N N 178 
DT  C5    C7     sing N N 179 
DT  C5    C6     doub N N 180 
DT  C7    H71    sing N N 181 
DT  C7    H72    sing N N 182 
DT  C7    H73    sing N N 183 
DT  C6    H6     sing N N 184 
HOH O     H1     sing N N 185 
HOH O     H2     sing N N 186 
NT  C1    N1     doub N N 187 
NT  C1    N2     sing N N 188 
NT  C1    N3     sing N N 189 
NT  N1    HN1    sing N N 190 
NT  N2    HN21   sing N N 191 
NT  N2    HN22   sing N N 192 
NT  N3    C2     sing N N 193 
NT  N3    HN3    sing N N 194 
NT  C2    C3     sing N N 195 
NT  C2    H21    sing N N 196 
NT  C2    H22    sing N N 197 
NT  C3    O1     doub N N 198 
NT  C3    N4     sing N N 199 
NT  N4    C4     sing N N 200 
NT  N4    HN4    sing N N 201 
NT  C4    C5     sing Y N 202 
NT  C4    C7     doub Y N 203 
NT  C5    C6     doub Y N 204 
NT  C5    H5     sing N N 205 
NT  C6    N5     sing Y N 206 
NT  C6    C9     sing N N 207 
NT  N5    C8     sing N N 208 
NT  N5    C7     sing Y N 209 
NT  C8    H81    sing N N 210 
NT  C8    H82    sing N N 211 
NT  C8    H83    sing N N 212 
NT  C7    H7     sing N N 213 
NT  C9    O2     doub N N 214 
NT  C9    N6     sing N N 215 
NT  N6    C10    sing N N 216 
NT  N6    HN6    sing N N 217 
NT  C10   C11    sing Y N 218 
NT  C10   C13    doub Y N 219 
NT  C11   C12    doub Y N 220 
NT  C11   H11    sing N N 221 
NT  C12   N7     sing Y N 222 
NT  C12   C15    sing N N 223 
NT  N7    C14    sing N N 224 
NT  N7    C13    sing Y N 225 
NT  C14   H141   sing N N 226 
NT  C14   H142   sing N N 227 
NT  C14   H143   sing N N 228 
NT  C13   H13    sing N N 229 
NT  C15   O3     doub N N 230 
NT  C15   N8     sing N N 231 
NT  N8    C16    sing N N 232 
NT  N8    HN8    sing N N 233 
NT  C16   C17    sing N N 234 
NT  C16   H161   sing N N 235 
NT  C16   H162   sing N N 236 
NT  C17   C18    sing N N 237 
NT  C17   H171   sing N N 238 
NT  C17   H172   sing N N 239 
NT  C18   N9     doub N N 240 
NT  C18   N10    sing N N 241 
NT  N9    HN9    sing N N 242 
NT  N10   HN01   sing N N 243 
NT  N10   HN02   sing N N 244 
# 
_ndb_struct_conf_na.entry_id   101D 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC  1  1_555 B DG  12 1_555 0.147  -0.208 -0.114 2.891   -17.827 -0.588 1  A_DC1:DG24_B  A 1  ? B 24 ? 19 1 
1 A DG  2  1_555 B DC  11 1_555 -0.027 -0.267 0.219  -3.485  -15.195 -3.444 2  A_DG2:DC23_B  A 2  ? B 23 ? 19 1 
1 A DC  3  1_555 B DG  10 1_555 0.096  -0.177 0.286  -4.972  -6.435  -0.364 3  A_DC3:DG22_B  A 3  ? B 22 ? 19 1 
1 A DG  4  1_555 B CBR 9  1_555 -0.217 0.056  0.018  9.060   -7.744  1.060  4  A_DG4:CBR21_B A 4  ? B 21 ? 19 1 
1 A DA  5  1_555 B DT  8  1_555 0.430  -0.075 -0.317 6.129   -20.556 7.183  5  A_DA5:DT20_B  A 5  ? B 20 ? 20 1 
1 A DA  6  1_555 B DT  7  1_555 -0.042 -0.078 0.219  3.511   -18.034 1.086  6  A_DA6:DT19_B  A 6  ? B 19 ? 20 1 
1 A DT  7  1_555 B DA  6  1_555 0.297  -0.067 -0.043 0.306   -20.982 4.024  7  A_DT7:DA18_B  A 7  ? B 18 ? 20 1 
1 A DT  8  1_555 B DA  5  1_555 -0.239 -0.312 0.405  -14.255 -21.443 7.034  8  A_DT8:DA17_B  A 8  ? B 17 ? 20 1 
1 A CBR 9  1_555 B DG  4  1_555 0.246  -0.354 -0.171 -9.615  -11.260 2.726  9  A_CBR9:DG16_B A 9  ? B 16 ? 19 1 
1 A DG  10 1_555 B DC  3  1_555 -0.226 -0.252 0.029  6.362   -2.898  -0.785 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 
1 A DC  11 1_555 B DG  2  1_555 0.749  -0.370 -0.044 9.834   -21.915 -2.711 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 
1 A DG  12 1_555 B DC  1  1_555 0.385  -0.273 -0.668 -6.288  10.370  -7.468 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC  1  1_555 B DG  12 1_555 A DG  2  1_555 B DC  11 1_555 -0.183 0.304  3.615 -3.280 8.830   33.016 -1.039 -0.268 3.577 15.156 
5.631   34.297 1  AA_DC1DG2:DC23DG24_BB   A 1  ? B 24 ? A 2  ? B 23 ? 
1 A DG  2  1_555 B DC  11 1_555 A DC  3  1_555 B DG  10 1_555 0.953  0.420  3.312 2.698  -9.673  41.697 1.548  -1.034 3.195 
-13.357 -3.726  42.837 2  AA_DG2DC3:DG22DC23_BB   A 2  ? B 23 ? A 3  ? B 22 ? 
1 A DC  3  1_555 B DG  10 1_555 A DG  4  1_555 B CBR 9  1_555 -0.097 0.731  3.187 6.284  2.081   27.711 1.019  1.606  3.134 4.267 
-12.889 28.476 3  AA_DC3DG4:CBR21DG22_BB  A 3  ? B 22 ? A 4  ? B 21 ? 
1 A DG  4  1_555 B CBR 9  1_555 A DA  5  1_555 B DT  8  1_555 0.072  0.168  3.290 1.938  5.455   42.418 -0.320 0.097  3.286 7.497 
-2.663  42.793 4  AA_DG4DA5:DT20CBR21_BB  A 4  ? B 21 ? A 5  ? B 20 ? 
1 A DA  5  1_555 B DT  8  1_555 A DA  6  1_555 B DT  7  1_555 -0.375 -0.181 3.248 -7.525 5.814   32.821 -1.233 -0.556 3.177 10.030 
12.981  34.135 5  AA_DA5DA6:DT19DT20_BB   A 5  ? B 20 ? A 6  ? B 19 ? 
1 A DA  6  1_555 B DT  7  1_555 A DT  7  1_555 B DA  6  1_555 -0.205 -0.604 3.304 0.855  -1.629  33.104 -0.782 0.504  3.323 -2.856 
-1.500  33.154 6  AA_DA6DT7:DA18DT19_BB   A 6  ? B 19 ? A 7  ? B 18 ? 
1 A DT  7  1_555 B DA  6  1_555 A DT  8  1_555 B DA  5  1_555 0.275  0.044  3.581 0.973  1.878   36.741 -0.210 -0.290 3.584 2.976 
-1.542  36.800 7  AA_DT7DT8:DA17DA18_BB   A 7  ? B 18 ? A 8  ? B 17 ? 
1 A DT  8  1_555 B DA  5  1_555 A CBR 9  1_555 B DG  4  1_555 0.217  0.648  3.269 6.578  0.879   41.253 0.816  0.391  3.276 1.237 
-9.264  41.760 8  AA_DT8CBR9:DG16DA17_BB  A 8  ? B 17 ? A 9  ? B 16 ? 
1 A CBR 9  1_555 B DG  4  1_555 A DG  10 1_555 B DC  3  1_555 -0.017 1.216  3.089 -5.850 5.641   26.024 1.192  -1.404 3.204 12.155 
12.606  27.242 9  AA_CBR9DG10:DC15DG16_BB A 9  ? B 16 ? A 10 ? B 15 ? 
1 A DG  10 1_555 B DC  3  1_555 A DC  11 1_555 B DG  2  1_555 -0.565 1.027  3.282 -2.375 -10.675 46.191 2.121  0.515  3.011 
-13.387 2.978   47.399 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 
1 A DC  11 1_555 B DG  2  1_555 A DG  12 1_555 B DC  1  1_555 0.449  0.791  4.200 5.297  -8.775  37.464 2.551  0.145  3.948 
-13.358 -8.064  38.792 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'MAGNESIUM ION' MG  
3 NETROPSIN       NT  
4 water           HOH 
#