data_102D
# 
_entry.id   102D 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.385 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   102D         pdb_0000102d 10.2210/pdb102d/pdb 
RCSB  GDL032       ?            ?                   
WWPDB D_1000170004 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1995-02-07 
2 'Structure model' 1 1 2008-05-22 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2024-02-07 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Data collection'           
4 4 'Structure model' 'Database references'       
5 4 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' chem_comp_atom 
2 4 'Structure model' chem_comp_bond 
3 4 'Structure model' database_2     
4 4 'Structure model' struct_site    
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_database_2.pdbx_DOI'                
2 4 'Structure model' '_database_2.pdbx_database_accession' 
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'      
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'      
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'       
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        102D 
_pdbx_database_status.recvd_initial_deposition_date   1994-12-15 
_pdbx_database_status.deposit_site                    BNL 
_pdbx_database_status.process_site                    NDB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Nunn, C.M.' 1 
'Neidle, S.' 2 
# 
_citation.id                        primary 
_citation.title                     
;Sequence-dependent drug binding to the minor groove of DNA: crystal structure of the DNA dodecamer d(CGCAAATTTGCG)2 complexed with propamidine.
;
_citation.journal_abbrev            J.Med.Chem. 
_citation.journal_volume            38 
_citation.page_first                2317 
_citation.page_last                 2325 
_citation.year                      1995 
_citation.journal_id_ASTM           JMCMAR 
_citation.country                   US 
_citation.journal_id_ISSN           0022-2623 
_citation.journal_id_CSD            0151 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   7608897 
_citation.pdbx_database_id_DOI      10.1021/jm00013a008 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Nunn, C.M.' 1 ? 
primary 'Neidle, S.' 2 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3')
;
3662.404 2  ? ? ? ? 
2 non-polymer syn '1,3-BIS(AMIDINOPHENOXY)PROPANE'                     312.366  1  ? ? ? ? 
3 water       nat water                                                18.015   73 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DC)(DA)(DA)(DA)(DT)(DT)(DT)(DG)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCAAATTTGCG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 '1,3-BIS(AMIDINOPHENOXY)PROPANE' TNT 
3 water                            HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DG n 
1 3  DC n 
1 4  DA n 
1 5  DA n 
1 6  DA n 
1 7  DT n 
1 8  DT n 
1 9  DT n 
1 10 DG n 
1 11 DC n 
1 12 DG n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P' 322.208 
HOH non-polymer   . WATER                                ? 'H2 O'            18.015  
TNT non-polymer   . '1,3-BIS(AMIDINOPHENOXY)PROPANE'     ? 'C17 H20 N4 O2'   312.366 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC C A . n 
A 1 2  DG 2  2  2  DG G A . n 
A 1 3  DC 3  3  3  DC C A . n 
A 1 4  DA 4  4  4  DA A A . n 
A 1 5  DA 5  5  5  DA A A . n 
A 1 6  DA 6  6  6  DA A A . n 
A 1 7  DT 7  7  7  DT T A . n 
A 1 8  DT 8  8  8  DT T A . n 
A 1 9  DT 9  9  9  DT T A . n 
A 1 10 DG 10 10 10 DG G A . n 
A 1 11 DC 11 11 11 DC C A . n 
A 1 12 DG 12 12 12 DG G A . n 
B 1 1  DC 1  13 13 DC C B . n 
B 1 2  DG 2  14 14 DG G B . n 
B 1 3  DC 3  15 15 DC C B . n 
B 1 4  DA 4  16 16 DA A B . n 
B 1 5  DA 5  17 17 DA A B . n 
B 1 6  DA 6  18 18 DA A B . n 
B 1 7  DT 7  19 19 DT T B . n 
B 1 8  DT 8  20 20 DT T B . n 
B 1 9  DT 9  21 21 DT T B . n 
B 1 10 DG 10 22 22 DG G B . n 
B 1 11 DC 11 23 23 DC C B . n 
B 1 12 DG 12 24 24 DG G B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 TNT 1  25 25 TNT TNT B . 
D 3 HOH 1  26 26 HOH HOH A . 
D 3 HOH 2  27 27 HOH HOH A . 
D 3 HOH 3  29 29 HOH HOH A . 
D 3 HOH 4  31 31 HOH HOH A . 
D 3 HOH 5  34 34 HOH HOH A . 
D 3 HOH 6  35 35 HOH HOH A . 
D 3 HOH 7  37 37 HOH HOH A . 
D 3 HOH 8  38 38 HOH HOH A . 
D 3 HOH 9  40 40 HOH HOH A . 
D 3 HOH 10 41 41 HOH HOH A . 
D 3 HOH 11 42 42 HOH HOH A . 
D 3 HOH 12 44 44 HOH HOH A . 
D 3 HOH 13 45 45 HOH HOH A . 
D 3 HOH 14 47 47 HOH HOH A . 
D 3 HOH 15 50 50 HOH HOH A . 
D 3 HOH 16 52 52 HOH HOH A . 
D 3 HOH 17 53 53 HOH HOH A . 
D 3 HOH 18 54 54 HOH HOH A . 
D 3 HOH 19 59 59 HOH HOH A . 
D 3 HOH 20 63 63 HOH HOH A . 
D 3 HOH 21 64 64 HOH HOH A . 
D 3 HOH 22 65 65 HOH HOH A . 
D 3 HOH 23 67 67 HOH HOH A . 
D 3 HOH 24 69 69 HOH HOH A . 
D 3 HOH 25 71 71 HOH HOH A . 
D 3 HOH 26 74 74 HOH HOH A . 
D 3 HOH 27 75 75 HOH HOH A . 
D 3 HOH 28 80 80 HOH HOH A . 
D 3 HOH 29 81 81 HOH HOH A . 
D 3 HOH 30 82 82 HOH HOH A . 
D 3 HOH 31 83 83 HOH HOH A . 
D 3 HOH 32 86 86 HOH HOH A . 
D 3 HOH 33 87 87 HOH HOH A . 
D 3 HOH 34 90 90 HOH HOH A . 
D 3 HOH 35 91 91 HOH HOH A . 
D 3 HOH 36 92 92 HOH HOH A . 
D 3 HOH 37 94 94 HOH HOH A . 
D 3 HOH 38 97 97 HOH HOH A . 
E 3 HOH 1  28 28 HOH HOH B . 
E 3 HOH 2  30 30 HOH HOH B . 
E 3 HOH 3  32 32 HOH HOH B . 
E 3 HOH 4  33 33 HOH HOH B . 
E 3 HOH 5  36 36 HOH HOH B . 
E 3 HOH 6  39 39 HOH HOH B . 
E 3 HOH 7  43 43 HOH HOH B . 
E 3 HOH 8  46 46 HOH HOH B . 
E 3 HOH 9  48 48 HOH HOH B . 
E 3 HOH 10 49 49 HOH HOH B . 
E 3 HOH 11 51 51 HOH HOH B . 
E 3 HOH 12 55 55 HOH HOH B . 
E 3 HOH 13 56 56 HOH HOH B . 
E 3 HOH 14 57 57 HOH HOH B . 
E 3 HOH 15 58 58 HOH HOH B . 
E 3 HOH 16 60 60 HOH HOH B . 
E 3 HOH 17 61 61 HOH HOH B . 
E 3 HOH 18 62 62 HOH HOH B . 
E 3 HOH 19 66 66 HOH HOH B . 
E 3 HOH 20 68 68 HOH HOH B . 
E 3 HOH 21 70 70 HOH HOH B . 
E 3 HOH 22 72 72 HOH HOH B . 
E 3 HOH 23 73 73 HOH HOH B . 
E 3 HOH 24 76 76 HOH HOH B . 
E 3 HOH 25 77 77 HOH HOH B . 
E 3 HOH 26 78 78 HOH HOH B . 
E 3 HOH 27 79 79 HOH HOH B . 
E 3 HOH 28 84 84 HOH HOH B . 
E 3 HOH 29 85 85 HOH HOH B . 
E 3 HOH 30 88 88 HOH HOH B . 
E 3 HOH 31 89 89 HOH HOH B . 
E 3 HOH 32 93 93 HOH HOH B . 
E 3 HOH 33 95 95 HOH HOH B . 
E 3 HOH 34 96 96 HOH HOH B . 
E 3 HOH 35 98 98 HOH HOH B . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
X-PLOR refinement     . ? 1 
XENGEN 'data scaling' . ? 2 
# 
_cell.entry_id           102D 
_cell.length_a           24.780 
_cell.length_b           41.160 
_cell.length_c           65.510 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         102D 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
# 
_exptl.entry_id          102D 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.28 
_exptl_crystal.density_percent_sol   46.06 
_exptl_crystal.description           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, SITTING DROP' 
_exptl_crystal_grow.temp            277.00 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              7.00 
_exptl_crystal_grow.pdbx_details    'pH 7.00, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 WATER           ? ? ? 
1 2 1 MPD             ? ? ? 
1 3 1 MGCL2           ? ? ? 
1 4 1 'NA CACODYLATE' ? ? ? 
1 5 2 WATER           ? ? ? 
1 6 2 MPD             ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           289.00 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'AREA DETECTOR' 
_diffrn_detector.type                   XENTRONICS 
_diffrn_detector.pdbx_collection_date   ? 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   ? 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             ? 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.5418 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'ROTATING ANODE' 
_diffrn_source.type                        ? 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             1.5418 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     102D 
_reflns.observed_criterion_sigma_I   ? 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             ? 
_reflns.d_resolution_high            2.200 
_reflns.number_obs                   3410 
_reflns.number_all                   12110 
_reflns.percent_possible_obs         ? 
_reflns.pdbx_Rmerge_I_obs            0.0530000 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_refine.entry_id                                 102D 
_refine.ls_number_reflns_obs                     842 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          2.000 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             8.000 
_refine.ls_d_res_high                            2.200 
_refine.ls_percent_reflns_obs                    90.800 
_refine.ls_R_factor_obs                          0.1550000 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.1550000 
_refine.ls_R_factor_R_free                       ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   486 
_refine_hist.pdbx_number_atoms_ligand         23 
_refine_hist.number_atoms_solvent             73 
_refine_hist.number_atoms_total               582 
_refine_hist.d_res_high                       2.200 
_refine_hist.d_res_low                        8.000 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
x_bond_d                0.022 ? ? ? 'X-RAY DIFFRACTION' ? 
x_bond_d_na             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_bond_d_prot           ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d               ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d_na            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d_prot          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg             4.00  ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg_na          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg_prot        ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_mcbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_mcangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_scbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_scangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_database_PDB_matrix.entry_id          102D 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  102D 
_struct.title                     
;SEQUENCE-DEPENDENT DRUG BINDING TO THE MINOR GROOVE OF DNA: THE CRYSTAL STRUCTURE OF THE DNA DODECAMER D(CGCAAATTTGCG)2 COMPLEXED WITH PROPAMIDINE
;
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        102D 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 3 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    102D 
_struct_ref.pdbx_db_accession          102D 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 102D A 1 ? 12 ? 102D 1  ? 12 ? 1  12 
2 1 102D B 1 ? 12 ? 102D 13 ? 24 ? 13 24 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A DC 1  N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1  B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog2  hydrog ? ? A DC 1  N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1  B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog3  hydrog ? ? A DC 1  O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1  B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog4  hydrog ? ? A DG 2  N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2  B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog5  hydrog ? ? A DG 2  N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2  B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog6  hydrog ? ? A DG 2  O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2  B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog7  hydrog ? ? A DC 3  N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3  B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog8  hydrog ? ? A DC 3  N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3  B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog9  hydrog ? ? A DC 3  O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3  B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog10 hydrog ? ? A DA 4  N1 ? ? ? 1_555 B DT 9  N3 ? ? A DA 4  B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog11 hydrog ? ? A DA 4  N6 ? ? ? 1_555 B DT 9  O4 ? ? A DA 4  B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog12 hydrog ? ? A DA 5  N1 ? ? ? 1_555 B DT 8  N3 ? ? A DA 5  B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog13 hydrog ? ? A DA 5  N6 ? ? ? 1_555 B DT 8  O4 ? ? A DA 5  B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog14 hydrog ? ? A DA 6  N1 ? ? ? 1_555 B DT 7  N3 ? ? A DA 6  B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog15 hydrog ? ? A DA 6  N6 ? ? ? 1_555 B DT 7  O4 ? ? A DA 6  B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog16 hydrog ? ? A DT 7  N3 ? ? ? 1_555 B DA 6  N1 ? ? A DT 7  B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog17 hydrog ? ? A DT 7  O4 ? ? ? 1_555 B DA 6  N6 ? ? A DT 7  B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog18 hydrog ? ? A DT 8  N3 ? ? ? 1_555 B DA 5  N1 ? ? A DT 8  B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog19 hydrog ? ? A DT 8  O4 ? ? ? 1_555 B DA 5  N6 ? ? A DT 8  B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog20 hydrog ? ? A DT 9  N3 ? ? ? 1_555 B DA 4  N1 ? ? A DT 9  B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog21 hydrog ? ? A DT 9  O4 ? ? ? 1_555 B DA 4  N6 ? ? A DT 9  B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3  N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3  O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3  N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog25 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2  N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog26 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2  O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog27 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2  N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog28 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1  N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog29 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1  O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog30 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1  N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software B TNT 25 ? 11 'BINDING SITE FOR RESIDUE TNT B 25' 
1   ?        ? ?   ?  ? ?  ?                                   
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 11 DA  A 6  ? DA  A 6  . ? 1_555 ? 
2  AC1 11 DT  A 7  ? DT  A 7  . ? 1_555 ? 
3  AC1 11 DT  A 8  ? DT  A 8  . ? 1_555 ? 
4  AC1 11 DT  A 9  ? DT  A 9  . ? 1_555 ? 
5  AC1 11 DG  A 10 ? DG  A 10 . ? 1_555 ? 
6  AC1 11 DA  B 6  ? DA  B 18 . ? 1_555 ? 
7  AC1 11 DT  B 7  ? DT  B 19 . ? 1_555 ? 
8  AC1 11 DT  B 8  ? DT  B 20 . ? 1_555 ? 
9  AC1 11 DT  B 9  ? DT  B 21 . ? 1_555 ? 
10 AC1 11 HOH E .  ? HOH B 32 . ? 1_555 ? 
11 AC1 11 HOH E .  ? HOH B 36 . ? 1_555 ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1 1 "O3'" A DT 7  ? ? "C3'" A DT 7  ? ? 1.383 1.419 -0.036 0.006 N 
2 1 C5    A DT 7  ? ? C7    A DT 7  ? ? 1.544 1.496 0.048  0.006 N 
3 1 "O3'" B DC 13 ? ? "C3'" B DC 13 ? ? 1.374 1.419 -0.045 0.006 N 
4 1 "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? 1.468 1.516 -0.048 0.008 N 
5 1 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 1.437 1.521 -0.084 0.010 N 
6 1 N9    B DA 17 ? ? C4    B DA 17 ? ? 1.338 1.374 -0.036 0.006 N 
7 1 "C5'" B DG 22 ? ? "C4'" B DG 22 ? ? 1.571 1.512 0.059  0.007 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 N1    A DC 1  ? ? C2    A DC 1  ? ? O2    A DC 1  ? ? 124.00 118.90 5.10   0.60 N 
2  1 "C3'" A DG 2  ? ? "O3'" A DG 2  ? ? P     A DC 3  ? ? 127.72 119.70 8.02   1.20 Y 
3  1 "C1'" A DC 3  ? ? "O4'" A DC 3  ? ? "C4'" A DC 3  ? ? 115.61 110.30 5.31   0.70 N 
4  1 "O4'" A DC 3  ? ? "C1'" A DC 3  ? ? "C2'" A DC 3  ? ? 99.48  105.90 -6.42  0.80 N 
5  1 "O4'" A DC 3  ? ? "C1'" A DC 3  ? ? N1    A DC 3  ? ? 114.38 108.30 6.08   0.30 N 
6  1 N3    A DC 3  ? ? C4    A DC 3  ? ? C5    A DC 3  ? ? 119.21 121.90 -2.69  0.40 N 
7  1 N1    A DC 3  ? ? C2    A DC 3  ? ? O2    A DC 3  ? ? 124.84 118.90 5.94   0.60 N 
8  1 N3    A DC 3  ? ? C2    A DC 3  ? ? O2    A DC 3  ? ? 114.87 121.90 -7.03  0.70 N 
9  1 "O3'" A DC 3  ? ? P     A DA 4  ? ? "O5'" A DA 4  ? ? 91.47  104.00 -12.53 1.90 Y 
10 1 "C1'" A DA 4  ? ? "O4'" A DA 4  ? ? "C4'" A DA 4  ? ? 116.17 110.30 5.87   0.70 N 
11 1 "O4'" A DA 4  ? ? "C1'" A DA 4  ? ? N9    A DA 4  ? ? 111.28 108.30 2.98   0.30 N 
12 1 C8    A DA 4  ? ? N9    A DA 4  ? ? C4    A DA 4  ? ? 103.12 105.80 -2.68  0.40 N 
13 1 "C1'" A DA 6  ? ? "O4'" A DA 6  ? ? "C4'" A DA 6  ? ? 114.55 110.30 4.25   0.70 N 
14 1 "O4'" A DA 6  ? ? "C1'" A DA 6  ? ? "C2'" A DA 6  ? ? 100.69 105.90 -5.21  0.80 N 
15 1 N1    A DA 6  ? ? C2    A DA 6  ? ? N3    A DA 6  ? ? 133.63 129.30 4.33   0.50 N 
16 1 N9    A DA 6  ? ? C4    A DA 6  ? ? C5    A DA 6  ? ? 109.39 105.80 3.59   0.40 N 
17 1 "O4'" A DT 7  ? ? "C1'" A DT 7  ? ? "C2'" A DT 7  ? ? 100.48 105.90 -5.42  0.80 N 
18 1 "O4'" A DT 7  ? ? "C1'" A DT 7  ? ? N1    A DT 7  ? ? 119.61 108.30 11.31  0.30 N 
19 1 N3    A DT 7  ? ? C2    A DT 7  ? ? O2    A DT 7  ? ? 116.75 122.30 -5.55  0.60 N 
20 1 C4    A DT 8  ? ? C5    A DT 8  ? ? C6    A DT 8  ? ? 122.82 118.00 4.82   0.60 N 
21 1 N3    A DT 8  ? ? C2    A DT 8  ? ? O2    A DT 8  ? ? 118.02 122.30 -4.28  0.60 N 
22 1 "C3'" A DT 8  ? ? "O3'" A DT 8  ? ? P     A DT 9  ? ? 132.70 119.70 13.00  1.20 Y 
23 1 P     A DT 9  ? ? "O5'" A DT 9  ? ? "C5'" A DT 9  ? ? 110.74 120.90 -10.16 1.60 N 
24 1 "C1'" A DT 9  ? ? "O4'" A DT 9  ? ? "C4'" A DT 9  ? ? 115.73 110.30 5.43   0.70 N 
25 1 "O4'" A DT 9  ? ? "C1'" A DT 9  ? ? "C2'" A DT 9  ? ? 99.83  105.90 -6.07  0.80 N 
26 1 N1    A DT 9  ? ? C2    A DT 9  ? ? N3    A DT 9  ? ? 118.48 114.60 3.88   0.60 N 
27 1 N3    A DT 9  ? ? C2    A DT 9  ? ? O2    A DT 9  ? ? 116.67 122.30 -5.63  0.60 N 
28 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9    A DG 10 ? ? 113.01 108.30 4.71   0.30 N 
29 1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P     A DC 11 ? ? 134.72 119.70 15.02  1.20 Y 
30 1 N3    A DC 11 ? ? C4    A DC 11 ? ? C5    A DC 11 ? ? 119.37 121.90 -2.53  0.40 N 
31 1 "C5'" A DG 12 ? ? "C4'" A DG 12 ? ? "O4'" A DG 12 ? ? 117.59 109.80 7.79   1.10 N 
32 1 N3    A DG 12 ? ? C4    A DG 12 ? ? N9    A DG 12 ? ? 129.98 126.00 3.98   0.60 N 
33 1 N3    B DC 13 ? ? C4    B DC 13 ? ? N4    B DC 13 ? ? 122.64 118.00 4.64   0.70 N 
34 1 "C1'" B DG 14 ? ? "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? 114.50 110.30 4.20   0.70 N 
35 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? "C2'" B DG 14 ? ? 100.56 105.90 -5.34  0.80 N 
36 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9    B DG 14 ? ? 115.14 108.30 6.84   0.30 N 
37 1 "C1'" B DC 15 ? ? "O4'" B DC 15 ? ? "C4'" B DC 15 ? ? 114.58 110.30 4.28   0.70 N 
38 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? "C2'" B DC 15 ? ? 100.08 105.90 -5.82  0.80 N 
39 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1    B DC 15 ? ? 112.65 108.30 4.35   0.30 N 
40 1 N1    B DC 15 ? ? C2    B DC 15 ? ? O2    B DC 15 ? ? 122.54 118.90 3.64   0.60 N 
41 1 N1    B DA 16 ? ? C2    B DA 16 ? ? N3    B DA 16 ? ? 125.39 129.30 -3.91  0.50 N 
42 1 C2    B DA 16 ? ? N3    B DA 16 ? ? C4    B DA 16 ? ? 115.45 110.60 4.85   0.50 N 
43 1 "C1'" B DA 17 ? ? "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? 115.06 110.30 4.76   0.70 N 
44 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? "C2'" B DA 17 ? ? 100.98 105.90 -4.92  0.80 N 
45 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9    B DA 17 ? ? 114.81 108.30 6.51   0.30 N 
46 1 N9    B DA 17 ? ? C4    B DA 17 ? ? C5    B DA 17 ? ? 108.62 105.80 2.82   0.40 N 
47 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9    B DA 18 ? ? 111.84 108.30 3.54   0.30 N 
48 1 P     B DT 19 ? ? "O5'" B DT 19 ? ? "C5'" B DT 19 ? ? 111.18 120.90 -9.72  1.60 N 
49 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1    B DT 19 ? ? 115.28 108.30 6.98   0.30 N 
50 1 N1    B DT 19 ? ? C2    B DT 19 ? ? N3    B DT 19 ? ? 118.25 114.60 3.65   0.60 N 
51 1 C4    B DT 19 ? ? C5    B DT 19 ? ? C6    B DT 19 ? ? 122.35 118.00 4.35   0.60 N 
52 1 C5    B DT 19 ? ? C4    B DT 19 ? ? O4    B DT 19 ? ? 129.55 124.90 4.65   0.70 N 
53 1 C6    B DT 19 ? ? C5    B DT 19 ? ? C7    B DT 19 ? ? 118.73 122.90 -4.17  0.60 N 
54 1 N1    B DT 21 ? ? C2    B DT 21 ? ? N3    B DT 21 ? ? 119.03 114.60 4.43   0.60 N 
55 1 C4    B DT 21 ? ? C5    B DT 21 ? ? C6    B DT 21 ? ? 121.96 118.00 3.96   0.60 N 
56 1 N3    B DT 21 ? ? C2    B DT 21 ? ? O2    B DT 21 ? ? 116.17 122.30 -6.13  0.60 N 
57 1 "O4'" B DG 22 ? ? "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? 101.46 104.50 -3.04  0.40 N 
58 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 96.77  102.40 -5.63  0.80 N 
59 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9    B DG 22 ? ? 113.13 108.30 4.83   0.30 N 
60 1 N3    B DG 22 ? ? C4    B DG 22 ? ? C5    B DG 22 ? ? 124.89 128.60 -3.71  0.50 N 
61 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1    B DC 23 ? ? 117.55 108.30 9.25   0.30 N 
62 1 N1    B DC 23 ? ? C2    B DC 23 ? ? O2    B DC 23 ? ? 123.01 118.90 4.11   0.60 N 
63 1 N3    B DC 23 ? ? C4    B DC 23 ? ? N4    B DC 23 ? ? 123.97 118.00 5.97   0.70 N 
64 1 C5    B DC 23 ? ? C4    B DC 23 ? ? N4    B DC 23 ? ? 114.80 120.20 -5.40  0.70 N 
65 1 "C5'" B DG 24 ? ? "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? 102.85 114.10 -11.25 1.80 N 
66 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9    B DG 24 ? ? 113.50 108.30 5.20   0.30 N 
# 
_struct_site_keywords.site_id   1 
_struct_site_keywords.text      'MINOR GROOVE BINDER' 
# 
loop_
_refine_B_iso.class 
_refine_B_iso.details 
_refine_B_iso.treatment 
_refine_B_iso.pdbx_refine_id 
'ALL ATOMS'  TR isotropic 'X-RAY DIFFRACTION' 
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' 
# 
loop_
_refine_occupancy.class 
_refine_occupancy.treatment 
_refine_occupancy.pdbx_refine_id 
'ALL ATOMS'  fix 'X-RAY DIFFRACTION' 
'ALL WATERS' fix 'X-RAY DIFFRACTION' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA  OP3    O N N 1   
DA  P      P N N 2   
DA  OP1    O N N 3   
DA  OP2    O N N 4   
DA  "O5'"  O N N 5   
DA  "C5'"  C N N 6   
DA  "C4'"  C N R 7   
DA  "O4'"  O N N 8   
DA  "C3'"  C N S 9   
DA  "O3'"  O N N 10  
DA  "C2'"  C N N 11  
DA  "C1'"  C N R 12  
DA  N9     N Y N 13  
DA  C8     C Y N 14  
DA  N7     N Y N 15  
DA  C5     C Y N 16  
DA  C6     C Y N 17  
DA  N6     N N N 18  
DA  N1     N Y N 19  
DA  C2     C Y N 20  
DA  N3     N Y N 21  
DA  C4     C Y N 22  
DA  HOP3   H N N 23  
DA  HOP2   H N N 24  
DA  "H5'"  H N N 25  
DA  "H5''" H N N 26  
DA  "H4'"  H N N 27  
DA  "H3'"  H N N 28  
DA  "HO3'" H N N 29  
DA  "H2'"  H N N 30  
DA  "H2''" H N N 31  
DA  "H1'"  H N N 32  
DA  H8     H N N 33  
DA  H61    H N N 34  
DA  H62    H N N 35  
DA  H2     H N N 36  
DC  OP3    O N N 37  
DC  P      P N N 38  
DC  OP1    O N N 39  
DC  OP2    O N N 40  
DC  "O5'"  O N N 41  
DC  "C5'"  C N N 42  
DC  "C4'"  C N R 43  
DC  "O4'"  O N N 44  
DC  "C3'"  C N S 45  
DC  "O3'"  O N N 46  
DC  "C2'"  C N N 47  
DC  "C1'"  C N R 48  
DC  N1     N N N 49  
DC  C2     C N N 50  
DC  O2     O N N 51  
DC  N3     N N N 52  
DC  C4     C N N 53  
DC  N4     N N N 54  
DC  C5     C N N 55  
DC  C6     C N N 56  
DC  HOP3   H N N 57  
DC  HOP2   H N N 58  
DC  "H5'"  H N N 59  
DC  "H5''" H N N 60  
DC  "H4'"  H N N 61  
DC  "H3'"  H N N 62  
DC  "HO3'" H N N 63  
DC  "H2'"  H N N 64  
DC  "H2''" H N N 65  
DC  "H1'"  H N N 66  
DC  H41    H N N 67  
DC  H42    H N N 68  
DC  H5     H N N 69  
DC  H6     H N N 70  
DG  OP3    O N N 71  
DG  P      P N N 72  
DG  OP1    O N N 73  
DG  OP2    O N N 74  
DG  "O5'"  O N N 75  
DG  "C5'"  C N N 76  
DG  "C4'"  C N R 77  
DG  "O4'"  O N N 78  
DG  "C3'"  C N S 79  
DG  "O3'"  O N N 80  
DG  "C2'"  C N N 81  
DG  "C1'"  C N R 82  
DG  N9     N Y N 83  
DG  C8     C Y N 84  
DG  N7     N Y N 85  
DG  C5     C Y N 86  
DG  C6     C N N 87  
DG  O6     O N N 88  
DG  N1     N N N 89  
DG  C2     C N N 90  
DG  N2     N N N 91  
DG  N3     N N N 92  
DG  C4     C Y N 93  
DG  HOP3   H N N 94  
DG  HOP2   H N N 95  
DG  "H5'"  H N N 96  
DG  "H5''" H N N 97  
DG  "H4'"  H N N 98  
DG  "H3'"  H N N 99  
DG  "HO3'" H N N 100 
DG  "H2'"  H N N 101 
DG  "H2''" H N N 102 
DG  "H1'"  H N N 103 
DG  H8     H N N 104 
DG  H1     H N N 105 
DG  H21    H N N 106 
DG  H22    H N N 107 
DT  OP3    O N N 108 
DT  P      P N N 109 
DT  OP1    O N N 110 
DT  OP2    O N N 111 
DT  "O5'"  O N N 112 
DT  "C5'"  C N N 113 
DT  "C4'"  C N R 114 
DT  "O4'"  O N N 115 
DT  "C3'"  C N S 116 
DT  "O3'"  O N N 117 
DT  "C2'"  C N N 118 
DT  "C1'"  C N R 119 
DT  N1     N N N 120 
DT  C2     C N N 121 
DT  O2     O N N 122 
DT  N3     N N N 123 
DT  C4     C N N 124 
DT  O4     O N N 125 
DT  C5     C N N 126 
DT  C7     C N N 127 
DT  C6     C N N 128 
DT  HOP3   H N N 129 
DT  HOP2   H N N 130 
DT  "H5'"  H N N 131 
DT  "H5''" H N N 132 
DT  "H4'"  H N N 133 
DT  "H3'"  H N N 134 
DT  "HO3'" H N N 135 
DT  "H2'"  H N N 136 
DT  "H2''" H N N 137 
DT  "H1'"  H N N 138 
DT  H3     H N N 139 
DT  H71    H N N 140 
DT  H72    H N N 141 
DT  H73    H N N 142 
DT  H6     H N N 143 
HOH O      O N N 144 
HOH H1     H N N 145 
HOH H2     H N N 146 
TNT C1     C Y N 147 
TNT C2     C Y N 148 
TNT C3     C Y N 149 
TNT C4     C Y N 150 
TNT C5     C Y N 151 
TNT C6     C Y N 152 
TNT C7     C N N 153 
TNT N1     N N N 154 
TNT N2     N N N 155 
TNT "C1'"  C Y N 156 
TNT "C2'"  C Y N 157 
TNT "C3'"  C Y N 158 
TNT "C4'"  C Y N 159 
TNT "C5'"  C Y N 160 
TNT "C6'"  C Y N 161 
TNT "C7'"  C N N 162 
TNT "N1'"  N N N 163 
TNT "N2'"  N N N 164 
TNT CA     C N N 165 
TNT O1     O N N 166 
TNT CB     C N N 167 
TNT "CA'"  C N N 168 
TNT "O1'"  O N N 169 
TNT H2     H N N 170 
TNT H3     H N N 171 
TNT H5     H N N 172 
TNT H6     H N N 173 
TNT HN1    H N N 174 
TNT HN2    H N N 175 
TNT HN3    H N N 176 
TNT "H2'"  H N N 177 
TNT "H3'"  H N N 178 
TNT "H5'"  H N N 179 
TNT "H6'"  H N N 180 
TNT "HN'1" H N N 181 
TNT "HN'2" H N N 182 
TNT "HN'3" H N N 183 
TNT HA1    H N N 184 
TNT HA2    H N N 185 
TNT HB1    H N N 186 
TNT HB2    H N N 187 
TNT "HA'1" H N N 188 
TNT "HA'2" H N N 189 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DT  OP3   P      sing N N 113 
DT  OP3   HOP3   sing N N 114 
DT  P     OP1    doub N N 115 
DT  P     OP2    sing N N 116 
DT  P     "O5'"  sing N N 117 
DT  OP2   HOP2   sing N N 118 
DT  "O5'" "C5'"  sing N N 119 
DT  "C5'" "C4'"  sing N N 120 
DT  "C5'" "H5'"  sing N N 121 
DT  "C5'" "H5''" sing N N 122 
DT  "C4'" "O4'"  sing N N 123 
DT  "C4'" "C3'"  sing N N 124 
DT  "C4'" "H4'"  sing N N 125 
DT  "O4'" "C1'"  sing N N 126 
DT  "C3'" "O3'"  sing N N 127 
DT  "C3'" "C2'"  sing N N 128 
DT  "C3'" "H3'"  sing N N 129 
DT  "O3'" "HO3'" sing N N 130 
DT  "C2'" "C1'"  sing N N 131 
DT  "C2'" "H2'"  sing N N 132 
DT  "C2'" "H2''" sing N N 133 
DT  "C1'" N1     sing N N 134 
DT  "C1'" "H1'"  sing N N 135 
DT  N1    C2     sing N N 136 
DT  N1    C6     sing N N 137 
DT  C2    O2     doub N N 138 
DT  C2    N3     sing N N 139 
DT  N3    C4     sing N N 140 
DT  N3    H3     sing N N 141 
DT  C4    O4     doub N N 142 
DT  C4    C5     sing N N 143 
DT  C5    C7     sing N N 144 
DT  C5    C6     doub N N 145 
DT  C7    H71    sing N N 146 
DT  C7    H72    sing N N 147 
DT  C7    H73    sing N N 148 
DT  C6    H6     sing N N 149 
HOH O     H1     sing N N 150 
HOH O     H2     sing N N 151 
TNT C1    C2     doub Y N 152 
TNT C1    C6     sing Y N 153 
TNT C1    O1     sing N N 154 
TNT C2    C3     sing Y N 155 
TNT C2    H2     sing N N 156 
TNT C3    C4     doub Y N 157 
TNT C3    H3     sing N N 158 
TNT C4    C5     sing Y N 159 
TNT C4    C7     sing N N 160 
TNT C5    C6     doub Y N 161 
TNT C5    H5     sing N N 162 
TNT C6    H6     sing N N 163 
TNT C7    N1     doub N N 164 
TNT C7    N2     sing N N 165 
TNT N1    HN1    sing N N 166 
TNT N2    HN2    sing N N 167 
TNT N2    HN3    sing N N 168 
TNT "C1'" "C2'"  doub Y N 169 
TNT "C1'" "C6'"  sing Y N 170 
TNT "C1'" "O1'"  sing N N 171 
TNT "C2'" "C3'"  sing Y N 172 
TNT "C2'" "H2'"  sing N N 173 
TNT "C3'" "C4'"  doub Y N 174 
TNT "C3'" "H3'"  sing N N 175 
TNT "C4'" "C5'"  sing Y N 176 
TNT "C4'" "C7'"  sing N N 177 
TNT "C5'" "C6'"  doub Y N 178 
TNT "C5'" "H5'"  sing N N 179 
TNT "C6'" "H6'"  sing N N 180 
TNT "C7'" "N1'"  doub N N 181 
TNT "C7'" "N2'"  sing N N 182 
TNT "N1'" "HN'1" sing N N 183 
TNT "N2'" "HN'2" sing N N 184 
TNT "N2'" "HN'3" sing N N 185 
TNT CA    O1     sing N N 186 
TNT CA    CB     sing N N 187 
TNT CA    HA1    sing N N 188 
TNT CA    HA2    sing N N 189 
TNT CB    "CA'"  sing N N 190 
TNT CB    HB1    sing N N 191 
TNT CB    HB2    sing N N 192 
TNT "CA'" "O1'"  sing N N 193 
TNT "CA'" "HA'1" sing N N 194 
TNT "CA'" "HA'2" sing N N 195 
# 
_ndb_struct_conf_na.entry_id   102D 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1  1_555 B DG 12 1_555 -0.109 -0.160 0.184  2.206  -9.356  -5.599 1  A_DC1:DG24_B  A 1  ? B 24 ? 19 1 
1 A DG 2  1_555 B DC 11 1_555 0.019  -0.290 0.545  4.541  -8.708  -4.717 2  A_DG2:DC23_B  A 2  ? B 23 ? 19 1 
1 A DC 3  1_555 B DG 10 1_555 0.050  -0.045 0.134  -5.131 -6.485  0.629  3  A_DC3:DG22_B  A 3  ? B 22 ? 19 1 
1 A DA 4  1_555 B DT 9  1_555 0.259  -0.094 -0.268 15.404 -10.654 -2.999 4  A_DA4:DT21_B  A 4  ? B 21 ? 20 1 
1 A DA 5  1_555 B DT 8  1_555 0.133  -0.044 -0.128 4.838  -15.845 -1.543 5  A_DA5:DT20_B  A 5  ? B 20 ? 20 1 
1 A DA 6  1_555 B DT 7  1_555 0.142  -0.035 0.329  2.228  -19.128 -4.332 6  A_DA6:DT19_B  A 6  ? B 19 ? 20 1 
1 A DT 7  1_555 B DA 6  1_555 0.015  -0.031 0.332  -0.167 -18.014 0.450  7  A_DT7:DA18_B  A 7  ? B 18 ? 20 1 
1 A DT 8  1_555 B DA 5  1_555 -0.258 -0.238 -0.166 -0.759 -16.903 -4.420 8  A_DT8:DA17_B  A 8  ? B 17 ? 20 1 
1 A DT 9  1_555 B DA 4  1_555 -0.357 -0.029 -0.318 -7.042 -10.913 -7.743 9  A_DT9:DA16_B  A 9  ? B 16 ? 20 1 
1 A DG 10 1_555 B DC 3  1_555 0.034  -0.152 0.299  7.644  0.533   -1.804 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 
1 A DC 11 1_555 B DG 2  1_555 0.199  -0.224 0.475  4.338  -20.209 -0.926 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 
1 A DG 12 1_555 B DC 1  1_555 -0.186 -0.323 -0.161 0.173  9.345   -4.458 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1  1_555 B DG 12 1_555 A DG 2  1_555 B DC 11 1_555 -0.082 -0.065 3.460 -3.208 2.454  37.301 -0.441 -0.317 3.444 3.823   
4.997  37.511 1  AA_DC1DG2:DC23DG24_BB   A 1  ? B 24 ? A 2  ? B 23 ? 
1 A DG 2  1_555 B DC 11 1_555 A DC 3  1_555 B DG 10 1_555 0.725  0.275  3.635 6.171  -3.387 38.974 0.853  -0.257 3.667 -5.026  
-9.158 39.581 2  AA_DG2DC3:DG22DC23_BB   A 2  ? B 23 ? A 3  ? B 22 ? 
1 A DC 3  1_555 B DG 10 1_555 A DA 4  1_555 B DT 9  1_555 -0.570 0.604  3.023 1.418  5.842  29.731 0.051  1.358  3.053 11.242  
-2.727 30.319 3  AA_DC3DA4:DT21DG22_BB   A 3  ? B 22 ? A 4  ? B 21 ? 
1 A DA 4  1_555 B DT 9  1_555 A DA 5  1_555 B DT 8  1_555 -0.080 0.094  3.564 -1.824 1.537  34.720 -0.098 -0.169 3.564 2.571   
3.053  34.799 4  AA_DA4DA5:DT20DT21_BB   A 4  ? B 21 ? A 5  ? B 20 ? 
1 A DA 5  1_555 B DT 8  1_555 A DA 6  1_555 B DT 7  1_555 0.142  -0.386 3.235 -2.940 2.069  41.671 -0.753 -0.503 3.196 2.902   
4.124  41.819 5  AA_DA5DA6:DT19DT20_BB   A 5  ? B 20 ? A 6  ? B 19 ? 
1 A DA 6  1_555 B DT 7  1_555 A DT 7  1_555 B DA 6  1_555 0.154  -0.802 3.393 -0.492 0.076  27.447 -1.709 -0.451 3.388 0.161   
1.036  27.451 6  AA_DA6DT7:DA18DT19_BB   A 6  ? B 19 ? A 7  ? B 18 ? 
1 A DT 7  1_555 B DA 6  1_555 A DT 8  1_555 B DA 5  1_555 -0.310 -0.090 3.217 3.613  1.487  37.391 -0.329 0.941  3.169 2.311   
-5.618 37.587 7  AA_DT7DT8:DA17DA18_BB   A 7  ? B 18 ? A 8  ? B 17 ? 
1 A DT 8  1_555 B DA 5  1_555 A DT 9  1_555 B DA 4  1_555 -0.291 0.217  3.487 2.067  -2.059 38.904 0.588  0.701  3.452 -3.085  
-3.099 39.009 8  AA_DT8DT9:DA16DA17_BB   A 8  ? B 17 ? A 9  ? B 16 ? 
1 A DT 9  1_555 B DA 4  1_555 A DG 10 1_555 B DC 3  1_555 0.645  0.990  3.102 -6.133 -2.038 33.924 1.961  -1.964 2.882 -3.454  
10.394 34.516 9  AA_DT9DG10:DC15DA16_BB  A 9  ? B 16 ? A 10 ? B 15 ? 
1 A DG 10 1_555 B DC 3  1_555 A DC 11 1_555 B DG 2  1_555 -0.512 0.347  3.577 -0.564 -6.980 37.883 1.467  0.701  3.468 -10.641 
0.860  38.501 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 
1 A DC 11 1_555 B DG 2  1_555 A DG 12 1_555 B DC 1  1_555 0.328  0.643  3.735 6.467  -7.186 38.006 1.935  0.389  3.567 -10.821 
-9.739 39.173 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? 
# 
_atom_sites.entry_id                    102D 
_atom_sites.fract_transf_matrix[1][1]   0.040355 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.024295 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.015265 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_