data_104D
# 
_entry.id   104D 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.392 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   104D         pdb_0000104d 10.2210/pdb104d/pdb 
WWPDB D_1000170010 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1995-03-31 
2 'Structure model' 1 1 2008-03-24 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2022-02-16 
5 'Structure model' 1 4 2024-05-22 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Data collection'           
4 4 'Structure model' 'Database references'       
5 4 'Structure model' 'Derived calculations'      
6 4 'Structure model' Other                       
7 5 'Structure model' 'Data collection'           
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' database_2            
2 4 'Structure model' pdbx_database_status  
3 4 'Structure model' pdbx_nmr_software     
4 4 'Structure model' pdbx_struct_assembly  
5 4 'Structure model' pdbx_struct_oper_list 
6 5 'Structure model' chem_comp_atom        
7 5 'Structure model' chem_comp_bond        
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_database_2.pdbx_DOI'                
2 4 'Structure model' '_database_2.pdbx_database_accession' 
3 4 'Structure model' '_pdbx_database_status.process_site'  
4 4 'Structure model' '_pdbx_nmr_software.name'             
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        104D 
_pdbx_database_status.recvd_initial_deposition_date   1994-12-16 
_pdbx_database_status.deposit_site                    ? 
_pdbx_database_status.process_site                    BNL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Zhu, L.'     1 
'Salazar, M.' 2 
'Reid, B.R.'  3 
# 
_citation.id                        primary 
_citation.title                     
'DNA duplexes flanked by hybrid duplexes: the solution structure of chimeric junctions in [r(cgcg)d(TATACGCG)]2.' 
_citation.journal_abbrev            Biochemistry 
_citation.journal_volume            34 
_citation.page_first                2372 
_citation.page_last                 2380 
_citation.year                      1995 
_citation.journal_id_ASTM           BICHAW 
_citation.country                   US 
_citation.journal_id_ISSN           0006-2960 
_citation.journal_id_CSD            0033 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   7857947 
_citation.pdbx_database_id_DOI      10.1021/bi00007a033 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Zhu, L.'     1 ? 
primary 'Salazar, M.' 2 ? 
primary 'Reid, B.R.'  3 ? 
# 
_entity.id                         1 
_entity.type                       polymer 
_entity.src_method                 syn 
_entity.pdbx_description           
;DNA/RNA (5'-R(*CP*GP*CP*G)-D(P*TP*AP*TP*AP*CP*GP*CP*G)-3')
;
_entity.formula_weight             3727.392 
_entity.pdbx_number_of_molecules   2 
_entity.pdbx_ec                    ? 
_entity.pdbx_mutation              ? 
_entity.pdbx_fragment              ? 
_entity.details                    ? 
# 
_entity_keywords.entity_id   1 
_entity_keywords.text        'DEOXYRIBONUCLEIC ACID/RIBONUCLEIC ACID' 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           'polydeoxyribonucleotide/polyribonucleotide hybrid' 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       'CGCG(DT)(DA)(DT)(DA)(DC)(DG)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGTATACGCG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  C  n 
1 2  G  n 
1 3  C  n 
1 4  G  n 
1 5  DT n 
1 6  DA n 
1 7  DT n 
1 8  DA n 
1 9  DC n 
1 10 DG n 
1 11 DC n 
1 12 DG n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    ? 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       ? 
_pdbx_entity_src_syn.details                'CHEMICALLY SYNTHESIZED' 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
C  'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"          ? 'C9 H14 N3 O8 P'  323.197 
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'  307.197 
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P' 322.208 
G  'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE"         ? 'C10 H14 N5 O8 P' 363.221 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  C  1  1  1  C  C A . n 
A 1 2  G  2  2  2  G  G A . n 
A 1 3  C  3  3  3  C  C A . n 
A 1 4  G  4  4  4  G  G A . n 
A 1 5  DT 5  5  5  DT T A . n 
A 1 6  DA 6  6  6  DA A A . n 
A 1 7  DT 7  7  7  DT T A . n 
A 1 8  DA 8  8  8  DA A A . n 
A 1 9  DC 9  9  9  DC C A . n 
A 1 10 DG 10 10 10 DG G A . n 
A 1 11 DC 11 11 11 DC C A . n 
A 1 12 DG 12 12 12 DG G A . n 
B 1 1  C  1  13 13 C  C B . n 
B 1 2  G  2  14 14 G  G B . n 
B 1 3  C  3  15 15 C  C B . n 
B 1 4  G  4  16 16 G  G B . n 
B 1 5  DT 5  17 17 DT T B . n 
B 1 6  DA 6  18 18 DA A B . n 
B 1 7  DT 7  19 19 DT T B . n 
B 1 8  DA 8  20 20 DA A B . n 
B 1 9  DC 9  21 21 DC C B . n 
B 1 10 DG 10 22 22 DG G B . n 
B 1 11 DC 11 23 23 DC C B . n 
B 1 12 DG 12 24 24 DG G B . n 
# 
_software.name             AMBER 
_software.classification   refinement 
_software.version          . 
_software.citation_id      ? 
_software.pdbx_ordinal     1 
# 
_cell.entry_id           104D 
_cell.length_a           1.000 
_cell.length_b           1.000 
_cell.length_c           1.000 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              1 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         104D 
_symmetry.space_group_name_H-M             'P 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                1 
# 
_exptl.entry_id          104D 
_exptl.method            'SOLUTION NMR' 
_exptl.crystals_number   ? 
# 
_database_PDB_matrix.entry_id          104D 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  104D 
_struct.title                     'DNA DUPLEXES FLANKED BY HYBRID DUPLEXES: THE SOLUTION STRUCTURE OF CHIMERIC JUNCTIONS IN' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        104D 
_struct_keywords.pdbx_keywords   'DNA-RNA HYBRID' 
_struct_keywords.text            'DNA, RNA, JUNCTION, HYBRID, DUPLEX, DNA-RNA COMPLEX, DNA-RNA HYBRID' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    104D 
_struct_ref.pdbx_db_accession          104D 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 104D A 1 ? 12 ? 104D 1  ? 12 ? 1  12 
2 1 104D B 1 ? 12 ? 104D 13 ? 24 ? 13 24 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A C  1  N3 ? ? ? 1_555 B DG 12 N1 ? ? A C  1  B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog2  hydrog ? ? A C  1  N4 ? ? ? 1_555 B DG 12 O6 ? ? A C  1  B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog3  hydrog ? ? A C  1  O2 ? ? ? 1_555 B DG 12 N2 ? ? A C  1  B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog4  hydrog ? ? A G  2  N1 ? ? ? 1_555 B DC 11 N3 ? ? A G  2  B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog5  hydrog ? ? A G  2  N2 ? ? ? 1_555 B DC 11 O2 ? ? A G  2  B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog6  hydrog ? ? A G  2  O6 ? ? ? 1_555 B DC 11 N4 ? ? A G  2  B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog7  hydrog ? ? A C  3  N3 ? ? ? 1_555 B DG 10 N1 ? ? A C  3  B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog8  hydrog ? ? A C  3  N4 ? ? ? 1_555 B DG 10 O6 ? ? A C  3  B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog9  hydrog ? ? A C  3  O2 ? ? ? 1_555 B DG 10 N2 ? ? A C  3  B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog10 hydrog ? ? A G  4  N1 ? ? ? 1_555 B DC 9  N3 ? ? A G  4  B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog11 hydrog ? ? A G  4  N2 ? ? ? 1_555 B DC 9  O2 ? ? A G  4  B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog12 hydrog ? ? A G  4  O6 ? ? ? 1_555 B DC 9  N4 ? ? A G  4  B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog13 hydrog ? ? A DT 5  N3 ? ? ? 1_555 B DA 8  N1 ? ? A DT 5  B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog14 hydrog ? ? A DT 5  O4 ? ? ? 1_555 B DA 8  N6 ? ? A DT 5  B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog15 hydrog ? ? A DA 6  N1 ? ? ? 1_555 B DT 7  N3 ? ? A DA 6  B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog16 hydrog ? ? A DA 6  N6 ? ? ? 1_555 B DT 7  O4 ? ? A DA 6  B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog17 hydrog ? ? A DT 7  N3 ? ? ? 1_555 B DA 6  N1 ? ? A DT 7  B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog18 hydrog ? ? A DT 7  O4 ? ? ? 1_555 B DA 6  N6 ? ? A DT 7  B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog19 hydrog ? ? A DA 8  N1 ? ? ? 1_555 B DT 5  N3 ? ? A DA 8  B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog20 hydrog ? ? A DA 8  N6 ? ? ? 1_555 B DT 5  O4 ? ? A DA 8  B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog21 hydrog ? ? A DC 9  N3 ? ? ? 1_555 B G  4  N1 ? ? A DC 9  B G  16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog22 hydrog ? ? A DC 9  N4 ? ? ? 1_555 B G  4  O6 ? ? A DC 9  B G  16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog23 hydrog ? ? A DC 9  O2 ? ? ? 1_555 B G  4  N2 ? ? A DC 9  B G  16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B C  3  N3 ? ? A DG 10 B C  15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B C  3  O2 ? ? A DG 10 B C  15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B C  3  N4 ? ? A DG 10 B C  15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B G  2  N1 ? ? A DC 11 B G  14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B G  2  O6 ? ? A DC 11 B G  14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B G  2  N2 ? ? A DC 11 B G  14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B C  1  N3 ? ? A DG 12 B C  13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B C  1  O2 ? ? A DG 12 B C  13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B C  1  N4 ? ? A DG 12 B C  13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
_pdbx_validate_rmsd_bond.id                        1 
_pdbx_validate_rmsd_bond.PDB_model_num             1 
_pdbx_validate_rmsd_bond.auth_atom_id_1            C8 
_pdbx_validate_rmsd_bond.auth_asym_id_1            B 
_pdbx_validate_rmsd_bond.auth_comp_id_1            G 
_pdbx_validate_rmsd_bond.auth_seq_id_1             14 
_pdbx_validate_rmsd_bond.PDB_ins_code_1            ? 
_pdbx_validate_rmsd_bond.label_alt_id_1            ? 
_pdbx_validate_rmsd_bond.auth_atom_id_2            N9 
_pdbx_validate_rmsd_bond.auth_asym_id_2            B 
_pdbx_validate_rmsd_bond.auth_comp_id_2            G 
_pdbx_validate_rmsd_bond.auth_seq_id_2             14 
_pdbx_validate_rmsd_bond.PDB_ins_code_2            ? 
_pdbx_validate_rmsd_bond.label_alt_id_2            ? 
_pdbx_validate_rmsd_bond.bond_value                1.332 
_pdbx_validate_rmsd_bond.bond_target_value         1.374 
_pdbx_validate_rmsd_bond.bond_deviation            -0.042 
_pdbx_validate_rmsd_bond.bond_standard_deviation   0.007 
_pdbx_validate_rmsd_bond.linker_flag               N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "C3'" A C  1  ? ? "C2'" A C  1  ? ? "C1'" A C  1  ? ? 106.82 101.50 5.32 0.80 N 
2  1 "O4'" A C  1  ? ? "C1'" A C  1  ? ? N1    A C  1  ? ? 115.14 108.50 6.64 0.70 N 
3  1 "C5'" A G  2  ? ? "C4'" A G  2  ? ? "O4'" A G  2  ? ? 115.81 109.80 6.01 0.90 N 
4  1 "O4'" A G  2  ? ? "C1'" A G  2  ? ? N9    A G  2  ? ? 115.81 108.50 7.31 0.70 N 
5  1 N7    A G  2  ? ? C8    A G  2  ? ? N9    A G  2  ? ? 116.96 113.10 3.86 0.50 N 
6  1 "C5'" A C  3  ? ? "C4'" A C  3  ? ? "O4'" A C  3  ? ? 116.18 109.80 6.38 0.90 N 
7  1 "O4'" A C  3  ? ? "C1'" A C  3  ? ? N1    A C  3  ? ? 114.12 108.50 5.62 0.70 N 
8  1 "O4'" A G  4  ? ? "C1'" A G  4  ? ? N9    A G  4  ? ? 113.78 108.50 5.28 0.70 N 
9  1 "O4'" A DT 5  ? ? "C1'" A DT 5  ? ? N1    A DT 5  ? ? 113.99 108.30 5.69 0.30 N 
10 1 "O4'" A DA 6  ? ? "C1'" A DA 6  ? ? N9    A DA 6  ? ? 110.81 108.30 2.51 0.30 N 
11 1 "O4'" A DT 7  ? ? "C1'" A DT 7  ? ? N1    A DT 7  ? ? 112.99 108.30 4.69 0.30 N 
12 1 "O4'" A DC 9  ? ? "C1'" A DC 9  ? ? N1    A DC 9  ? ? 113.24 108.30 4.94 0.30 N 
13 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9    A DG 10 ? ? 115.49 108.30 7.19 0.30 N 
14 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9    A DG 12 ? ? 112.27 108.30 3.97 0.30 N 
15 1 "C3'" B C  13 ? ? "C2'" B C  13 ? ? "C1'" B C  13 ? ? 106.59 101.50 5.09 0.80 N 
16 1 "O4'" B C  13 ? ? "C1'" B C  13 ? ? N1    B C  13 ? ? 114.80 108.50 6.30 0.70 N 
17 1 "C5'" B G  14 ? ? "C4'" B G  14 ? ? "O4'" B G  14 ? ? 115.99 109.80 6.19 0.90 N 
18 1 "O4'" B G  14 ? ? "C1'" B G  14 ? ? N9    B G  14 ? ? 115.81 108.50 7.31 0.70 N 
19 1 N7    B G  14 ? ? C8    B G  14 ? ? N9    B G  14 ? ? 116.98 113.10 3.88 0.50 N 
20 1 "C5'" B C  15 ? ? "C4'" B C  15 ? ? "O4'" B C  15 ? ? 116.19 109.80 6.39 0.90 N 
21 1 "O4'" B C  15 ? ? "C1'" B C  15 ? ? N1    B C  15 ? ? 114.43 108.50 5.93 0.70 N 
22 1 "O4'" B G  16 ? ? "C1'" B G  16 ? ? N9    B G  16 ? ? 113.85 108.50 5.35 0.70 N 
23 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1    B DT 17 ? ? 114.01 108.30 5.71 0.30 N 
24 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9    B DA 18 ? ? 110.76 108.30 2.46 0.30 N 
25 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1    B DT 19 ? ? 112.93 108.30 4.63 0.30 N 
26 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1    B DC 21 ? ? 113.27 108.30 4.97 0.30 N 
27 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9    B DG 22 ? ? 115.60 108.30 7.30 0.30 N 
28 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9    B DG 24 ? ? 112.06 108.30 3.76 0.30 N 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1 1 G  A 2  ? ? 0.068 'SIDE CHAIN' 
2 1 DT A 5  ? ? 0.073 'SIDE CHAIN' 
3 1 DA A 6  ? ? 0.129 'SIDE CHAIN' 
4 1 DT A 7  ? ? 0.081 'SIDE CHAIN' 
5 1 G  B 14 ? ? 0.066 'SIDE CHAIN' 
6 1 DT B 17 ? ? 0.076 'SIDE CHAIN' 
7 1 DA B 18 ? ? 0.126 'SIDE CHAIN' 
8 1 DT B 19 ? ? 0.081 'SIDE CHAIN' 
# 
_pdbx_nmr_ensemble.entry_id                                      104D 
_pdbx_nmr_ensemble.conformers_calculated_total_number            ? 
_pdbx_nmr_ensemble.conformers_submitted_total_number             1 
_pdbx_nmr_ensemble.conformer_selection_criteria                  ? 
_pdbx_nmr_ensemble.average_constraints_per_residue               ? 
_pdbx_nmr_ensemble.average_constraint_violations_per_residue     ? 
_pdbx_nmr_ensemble.maximum_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.average_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.distance_constraint_violation_method          ? 
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method     ? 
# 
_pdbx_nmr_refine.entry_id           104D 
_pdbx_nmr_refine.method             ? 
_pdbx_nmr_refine.details            
;R VALUE 0.160 FINAL RMS COORD. SHIFT 0.65 ANGSTROMS NUMBER OF ATOMS USED IN REFINEMENT. NUMBER OF PROTEIN ATOMS 0 NUMBER OF NUCLEIC ACID ATOMS 766 NUMBER OF HETEROGEN ATOMS 0 NUMBER OF SOLVENT ATOMS 0
;
_pdbx_nmr_refine.software_ordinal   1 
# 
_pdbx_nmr_software.name             Discover 
_pdbx_nmr_software.version          ? 
_pdbx_nmr_software.classification   refinement 
_pdbx_nmr_software.authors          'BIOSYM TECHNOLOGIES, INC.' 
_pdbx_nmr_software.ordinal          1 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
C  OP3    O N N 1   
C  P      P N N 2   
C  OP1    O N N 3   
C  OP2    O N N 4   
C  "O5'"  O N N 5   
C  "C5'"  C N N 6   
C  "C4'"  C N R 7   
C  "O4'"  O N N 8   
C  "C3'"  C N S 9   
C  "O3'"  O N N 10  
C  "C2'"  C N R 11  
C  "O2'"  O N N 12  
C  "C1'"  C N R 13  
C  N1     N N N 14  
C  C2     C N N 15  
C  O2     O N N 16  
C  N3     N N N 17  
C  C4     C N N 18  
C  N4     N N N 19  
C  C5     C N N 20  
C  C6     C N N 21  
C  HOP3   H N N 22  
C  HOP2   H N N 23  
C  "H5'"  H N N 24  
C  "H5''" H N N 25  
C  "H4'"  H N N 26  
C  "H3'"  H N N 27  
C  "HO3'" H N N 28  
C  "H2'"  H N N 29  
C  "HO2'" H N N 30  
C  "H1'"  H N N 31  
C  H41    H N N 32  
C  H42    H N N 33  
C  H5     H N N 34  
C  H6     H N N 35  
DA OP3    O N N 36  
DA P      P N N 37  
DA OP1    O N N 38  
DA OP2    O N N 39  
DA "O5'"  O N N 40  
DA "C5'"  C N N 41  
DA "C4'"  C N R 42  
DA "O4'"  O N N 43  
DA "C3'"  C N S 44  
DA "O3'"  O N N 45  
DA "C2'"  C N N 46  
DA "C1'"  C N R 47  
DA N9     N Y N 48  
DA C8     C Y N 49  
DA N7     N Y N 50  
DA C5     C Y N 51  
DA C6     C Y N 52  
DA N6     N N N 53  
DA N1     N Y N 54  
DA C2     C Y N 55  
DA N3     N Y N 56  
DA C4     C Y N 57  
DA HOP3   H N N 58  
DA HOP2   H N N 59  
DA "H5'"  H N N 60  
DA "H5''" H N N 61  
DA "H4'"  H N N 62  
DA "H3'"  H N N 63  
DA "HO3'" H N N 64  
DA "H2'"  H N N 65  
DA "H2''" H N N 66  
DA "H1'"  H N N 67  
DA H8     H N N 68  
DA H61    H N N 69  
DA H62    H N N 70  
DA H2     H N N 71  
DC OP3    O N N 72  
DC P      P N N 73  
DC OP1    O N N 74  
DC OP2    O N N 75  
DC "O5'"  O N N 76  
DC "C5'"  C N N 77  
DC "C4'"  C N R 78  
DC "O4'"  O N N 79  
DC "C3'"  C N S 80  
DC "O3'"  O N N 81  
DC "C2'"  C N N 82  
DC "C1'"  C N R 83  
DC N1     N N N 84  
DC C2     C N N 85  
DC O2     O N N 86  
DC N3     N N N 87  
DC C4     C N N 88  
DC N4     N N N 89  
DC C5     C N N 90  
DC C6     C N N 91  
DC HOP3   H N N 92  
DC HOP2   H N N 93  
DC "H5'"  H N N 94  
DC "H5''" H N N 95  
DC "H4'"  H N N 96  
DC "H3'"  H N N 97  
DC "HO3'" H N N 98  
DC "H2'"  H N N 99  
DC "H2''" H N N 100 
DC "H1'"  H N N 101 
DC H41    H N N 102 
DC H42    H N N 103 
DC H5     H N N 104 
DC H6     H N N 105 
DG OP3    O N N 106 
DG P      P N N 107 
DG OP1    O N N 108 
DG OP2    O N N 109 
DG "O5'"  O N N 110 
DG "C5'"  C N N 111 
DG "C4'"  C N R 112 
DG "O4'"  O N N 113 
DG "C3'"  C N S 114 
DG "O3'"  O N N 115 
DG "C2'"  C N N 116 
DG "C1'"  C N R 117 
DG N9     N Y N 118 
DG C8     C Y N 119 
DG N7     N Y N 120 
DG C5     C Y N 121 
DG C6     C N N 122 
DG O6     O N N 123 
DG N1     N N N 124 
DG C2     C N N 125 
DG N2     N N N 126 
DG N3     N N N 127 
DG C4     C Y N 128 
DG HOP3   H N N 129 
DG HOP2   H N N 130 
DG "H5'"  H N N 131 
DG "H5''" H N N 132 
DG "H4'"  H N N 133 
DG "H3'"  H N N 134 
DG "HO3'" H N N 135 
DG "H2'"  H N N 136 
DG "H2''" H N N 137 
DG "H1'"  H N N 138 
DG H8     H N N 139 
DG H1     H N N 140 
DG H21    H N N 141 
DG H22    H N N 142 
DT OP3    O N N 143 
DT P      P N N 144 
DT OP1    O N N 145 
DT OP2    O N N 146 
DT "O5'"  O N N 147 
DT "C5'"  C N N 148 
DT "C4'"  C N R 149 
DT "O4'"  O N N 150 
DT "C3'"  C N S 151 
DT "O3'"  O N N 152 
DT "C2'"  C N N 153 
DT "C1'"  C N R 154 
DT N1     N N N 155 
DT C2     C N N 156 
DT O2     O N N 157 
DT N3     N N N 158 
DT C4     C N N 159 
DT O4     O N N 160 
DT C5     C N N 161 
DT C7     C N N 162 
DT C6     C N N 163 
DT HOP3   H N N 164 
DT HOP2   H N N 165 
DT "H5'"  H N N 166 
DT "H5''" H N N 167 
DT "H4'"  H N N 168 
DT "H3'"  H N N 169 
DT "HO3'" H N N 170 
DT "H2'"  H N N 171 
DT "H2''" H N N 172 
DT "H1'"  H N N 173 
DT H3     H N N 174 
DT H71    H N N 175 
DT H72    H N N 176 
DT H73    H N N 177 
DT H6     H N N 178 
G  OP3    O N N 179 
G  P      P N N 180 
G  OP1    O N N 181 
G  OP2    O N N 182 
G  "O5'"  O N N 183 
G  "C5'"  C N N 184 
G  "C4'"  C N R 185 
G  "O4'"  O N N 186 
G  "C3'"  C N S 187 
G  "O3'"  O N N 188 
G  "C2'"  C N R 189 
G  "O2'"  O N N 190 
G  "C1'"  C N R 191 
G  N9     N Y N 192 
G  C8     C Y N 193 
G  N7     N Y N 194 
G  C5     C Y N 195 
G  C6     C N N 196 
G  O6     O N N 197 
G  N1     N N N 198 
G  C2     C N N 199 
G  N2     N N N 200 
G  N3     N N N 201 
G  C4     C Y N 202 
G  HOP3   H N N 203 
G  HOP2   H N N 204 
G  "H5'"  H N N 205 
G  "H5''" H N N 206 
G  "H4'"  H N N 207 
G  "H3'"  H N N 208 
G  "HO3'" H N N 209 
G  "H2'"  H N N 210 
G  "HO2'" H N N 211 
G  "H1'"  H N N 212 
G  H8     H N N 213 
G  H1     H N N 214 
G  H21    H N N 215 
G  H22    H N N 216 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C  OP3   P      sing N N 1   
C  OP3   HOP3   sing N N 2   
C  P     OP1    doub N N 3   
C  P     OP2    sing N N 4   
C  P     "O5'"  sing N N 5   
C  OP2   HOP2   sing N N 6   
C  "O5'" "C5'"  sing N N 7   
C  "C5'" "C4'"  sing N N 8   
C  "C5'" "H5'"  sing N N 9   
C  "C5'" "H5''" sing N N 10  
C  "C4'" "O4'"  sing N N 11  
C  "C4'" "C3'"  sing N N 12  
C  "C4'" "H4'"  sing N N 13  
C  "O4'" "C1'"  sing N N 14  
C  "C3'" "O3'"  sing N N 15  
C  "C3'" "C2'"  sing N N 16  
C  "C3'" "H3'"  sing N N 17  
C  "O3'" "HO3'" sing N N 18  
C  "C2'" "O2'"  sing N N 19  
C  "C2'" "C1'"  sing N N 20  
C  "C2'" "H2'"  sing N N 21  
C  "O2'" "HO2'" sing N N 22  
C  "C1'" N1     sing N N 23  
C  "C1'" "H1'"  sing N N 24  
C  N1    C2     sing N N 25  
C  N1    C6     sing N N 26  
C  C2    O2     doub N N 27  
C  C2    N3     sing N N 28  
C  N3    C4     doub N N 29  
C  C4    N4     sing N N 30  
C  C4    C5     sing N N 31  
C  N4    H41    sing N N 32  
C  N4    H42    sing N N 33  
C  C5    C6     doub N N 34  
C  C5    H5     sing N N 35  
C  C6    H6     sing N N 36  
DA OP3   P      sing N N 37  
DA OP3   HOP3   sing N N 38  
DA P     OP1    doub N N 39  
DA P     OP2    sing N N 40  
DA P     "O5'"  sing N N 41  
DA OP2   HOP2   sing N N 42  
DA "O5'" "C5'"  sing N N 43  
DA "C5'" "C4'"  sing N N 44  
DA "C5'" "H5'"  sing N N 45  
DA "C5'" "H5''" sing N N 46  
DA "C4'" "O4'"  sing N N 47  
DA "C4'" "C3'"  sing N N 48  
DA "C4'" "H4'"  sing N N 49  
DA "O4'" "C1'"  sing N N 50  
DA "C3'" "O3'"  sing N N 51  
DA "C3'" "C2'"  sing N N 52  
DA "C3'" "H3'"  sing N N 53  
DA "O3'" "HO3'" sing N N 54  
DA "C2'" "C1'"  sing N N 55  
DA "C2'" "H2'"  sing N N 56  
DA "C2'" "H2''" sing N N 57  
DA "C1'" N9     sing N N 58  
DA "C1'" "H1'"  sing N N 59  
DA N9    C8     sing Y N 60  
DA N9    C4     sing Y N 61  
DA C8    N7     doub Y N 62  
DA C8    H8     sing N N 63  
DA N7    C5     sing Y N 64  
DA C5    C6     sing Y N 65  
DA C5    C4     doub Y N 66  
DA C6    N6     sing N N 67  
DA C6    N1     doub Y N 68  
DA N6    H61    sing N N 69  
DA N6    H62    sing N N 70  
DA N1    C2     sing Y N 71  
DA C2    N3     doub Y N 72  
DA C2    H2     sing N N 73  
DA N3    C4     sing Y N 74  
DC OP3   P      sing N N 75  
DC OP3   HOP3   sing N N 76  
DC P     OP1    doub N N 77  
DC P     OP2    sing N N 78  
DC P     "O5'"  sing N N 79  
DC OP2   HOP2   sing N N 80  
DC "O5'" "C5'"  sing N N 81  
DC "C5'" "C4'"  sing N N 82  
DC "C5'" "H5'"  sing N N 83  
DC "C5'" "H5''" sing N N 84  
DC "C4'" "O4'"  sing N N 85  
DC "C4'" "C3'"  sing N N 86  
DC "C4'" "H4'"  sing N N 87  
DC "O4'" "C1'"  sing N N 88  
DC "C3'" "O3'"  sing N N 89  
DC "C3'" "C2'"  sing N N 90  
DC "C3'" "H3'"  sing N N 91  
DC "O3'" "HO3'" sing N N 92  
DC "C2'" "C1'"  sing N N 93  
DC "C2'" "H2'"  sing N N 94  
DC "C2'" "H2''" sing N N 95  
DC "C1'" N1     sing N N 96  
DC "C1'" "H1'"  sing N N 97  
DC N1    C2     sing N N 98  
DC N1    C6     sing N N 99  
DC C2    O2     doub N N 100 
DC C2    N3     sing N N 101 
DC N3    C4     doub N N 102 
DC C4    N4     sing N N 103 
DC C4    C5     sing N N 104 
DC N4    H41    sing N N 105 
DC N4    H42    sing N N 106 
DC C5    C6     doub N N 107 
DC C5    H5     sing N N 108 
DC C6    H6     sing N N 109 
DG OP3   P      sing N N 110 
DG OP3   HOP3   sing N N 111 
DG P     OP1    doub N N 112 
DG P     OP2    sing N N 113 
DG P     "O5'"  sing N N 114 
DG OP2   HOP2   sing N N 115 
DG "O5'" "C5'"  sing N N 116 
DG "C5'" "C4'"  sing N N 117 
DG "C5'" "H5'"  sing N N 118 
DG "C5'" "H5''" sing N N 119 
DG "C4'" "O4'"  sing N N 120 
DG "C4'" "C3'"  sing N N 121 
DG "C4'" "H4'"  sing N N 122 
DG "O4'" "C1'"  sing N N 123 
DG "C3'" "O3'"  sing N N 124 
DG "C3'" "C2'"  sing N N 125 
DG "C3'" "H3'"  sing N N 126 
DG "O3'" "HO3'" sing N N 127 
DG "C2'" "C1'"  sing N N 128 
DG "C2'" "H2'"  sing N N 129 
DG "C2'" "H2''" sing N N 130 
DG "C1'" N9     sing N N 131 
DG "C1'" "H1'"  sing N N 132 
DG N9    C8     sing Y N 133 
DG N9    C4     sing Y N 134 
DG C8    N7     doub Y N 135 
DG C8    H8     sing N N 136 
DG N7    C5     sing Y N 137 
DG C5    C6     sing N N 138 
DG C5    C4     doub Y N 139 
DG C6    O6     doub N N 140 
DG C6    N1     sing N N 141 
DG N1    C2     sing N N 142 
DG N1    H1     sing N N 143 
DG C2    N2     sing N N 144 
DG C2    N3     doub N N 145 
DG N2    H21    sing N N 146 
DG N2    H22    sing N N 147 
DG N3    C4     sing N N 148 
DT OP3   P      sing N N 149 
DT OP3   HOP3   sing N N 150 
DT P     OP1    doub N N 151 
DT P     OP2    sing N N 152 
DT P     "O5'"  sing N N 153 
DT OP2   HOP2   sing N N 154 
DT "O5'" "C5'"  sing N N 155 
DT "C5'" "C4'"  sing N N 156 
DT "C5'" "H5'"  sing N N 157 
DT "C5'" "H5''" sing N N 158 
DT "C4'" "O4'"  sing N N 159 
DT "C4'" "C3'"  sing N N 160 
DT "C4'" "H4'"  sing N N 161 
DT "O4'" "C1'"  sing N N 162 
DT "C3'" "O3'"  sing N N 163 
DT "C3'" "C2'"  sing N N 164 
DT "C3'" "H3'"  sing N N 165 
DT "O3'" "HO3'" sing N N 166 
DT "C2'" "C1'"  sing N N 167 
DT "C2'" "H2'"  sing N N 168 
DT "C2'" "H2''" sing N N 169 
DT "C1'" N1     sing N N 170 
DT "C1'" "H1'"  sing N N 171 
DT N1    C2     sing N N 172 
DT N1    C6     sing N N 173 
DT C2    O2     doub N N 174 
DT C2    N3     sing N N 175 
DT N3    C4     sing N N 176 
DT N3    H3     sing N N 177 
DT C4    O4     doub N N 178 
DT C4    C5     sing N N 179 
DT C5    C7     sing N N 180 
DT C5    C6     doub N N 181 
DT C7    H71    sing N N 182 
DT C7    H72    sing N N 183 
DT C7    H73    sing N N 184 
DT C6    H6     sing N N 185 
G  OP3   P      sing N N 186 
G  OP3   HOP3   sing N N 187 
G  P     OP1    doub N N 188 
G  P     OP2    sing N N 189 
G  P     "O5'"  sing N N 190 
G  OP2   HOP2   sing N N 191 
G  "O5'" "C5'"  sing N N 192 
G  "C5'" "C4'"  sing N N 193 
G  "C5'" "H5'"  sing N N 194 
G  "C5'" "H5''" sing N N 195 
G  "C4'" "O4'"  sing N N 196 
G  "C4'" "C3'"  sing N N 197 
G  "C4'" "H4'"  sing N N 198 
G  "O4'" "C1'"  sing N N 199 
G  "C3'" "O3'"  sing N N 200 
G  "C3'" "C2'"  sing N N 201 
G  "C3'" "H3'"  sing N N 202 
G  "O3'" "HO3'" sing N N 203 
G  "C2'" "O2'"  sing N N 204 
G  "C2'" "C1'"  sing N N 205 
G  "C2'" "H2'"  sing N N 206 
G  "O2'" "HO2'" sing N N 207 
G  "C1'" N9     sing N N 208 
G  "C1'" "H1'"  sing N N 209 
G  N9    C8     sing Y N 210 
G  N9    C4     sing Y N 211 
G  C8    N7     doub Y N 212 
G  C8    H8     sing N N 213 
G  N7    C5     sing Y N 214 
G  C5    C6     sing N N 215 
G  C5    C4     doub Y N 216 
G  C6    O6     doub N N 217 
G  C6    N1     sing N N 218 
G  N1    C2     sing N N 219 
G  N1    H1     sing N N 220 
G  C2    N2     sing N N 221 
G  C2    N3     doub N N 222 
G  N2    H21    sing N N 223 
G  N2    H22    sing N N 224 
G  N3    C4     sing N N 225 
# 
_ndb_struct_conf_na.entry_id   104D 
_ndb_struct_conf_na.feature    'double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A C  1  1_555 B DG 12 1_555 1.137  -0.356 0.172  10.537  -24.591 0.239  1  A_C1:DG24_B  A 1  ? B 24 ? 19 1 
1 A G  2  1_555 B DC 11 1_555 -1.068 -0.350 0.296  3.528   -8.069  -2.060 2  A_G2:DC23_B  A 2  ? B 23 ? 19 1 
1 A C  3  1_555 B DG 10 1_555 0.086  -0.108 0.316  3.673   -15.486 -3.550 3  A_C3:DG22_B  A 3  ? B 22 ? 19 1 
1 A G  4  1_555 B DC 9  1_555 -0.560 -0.146 0.071  -11.989 -22.363 -0.281 4  A_G4:DC21_B  A 4  ? B 21 ? 19 1 
1 A DT 5  1_555 B DA 8  1_555 0.585  -0.155 0.272  -10.549 -13.895 3.168  5  A_DT5:DA20_B A 5  ? B 20 ? 20 1 
1 A DA 6  1_555 B DT 7  1_555 -0.513 -0.136 -0.110 -6.921  -22.807 -0.881 6  A_DA6:DT19_B A 6  ? B 19 ? 20 1 
1 A DT 7  1_555 B DA 6  1_555 0.496  -0.129 -0.107 7.307   -22.819 -0.895 7  A_DT7:DA18_B A 7  ? B 18 ? 20 1 
1 A DA 8  1_555 B DT 5  1_555 -0.593 -0.154 0.272  11.273  -13.873 3.218  8  A_DA8:DT17_B A 8  ? B 17 ? 20 1 
1 A DC 9  1_555 B G  4  1_555 0.606  -0.160 0.050  12.697  -22.927 -0.073 9  A_DC9:G16_B  A 9  ? B 16 ? 19 1 
1 A DG 10 1_555 B C  3  1_555 -0.177 -0.117 0.295  -3.588  -15.118 -3.308 10 A_DG10:C15_B A 10 ? B 15 ? 19 1 
1 A DC 11 1_555 B G  2  1_555 1.098  -0.355 0.265  -2.800  -8.001  -1.686 11 A_DC11:G14_B A 11 ? B 14 ? 19 1 
1 A DG 12 1_555 B C  1  1_555 -1.135 -0.348 0.133  -12.291 -26.411 0.664  12 A_DG12:C13_B A 12 ? B 13 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A C  1  1_555 B DG 12 1_555 A G  2  1_555 B DC 11 1_555 -0.364 -1.425 2.802 -2.424 16.995 29.601 -4.457 0.330  1.772 30.272 
4.317   34.122 1  AA_C1G2:DC23DG24_BB   A 1  ? B 24 ? A 2  ? B 23 ? 
1 A G  2  1_555 B DC 11 1_555 A C  3  1_555 B DG 10 1_555 0.224  -1.321 3.061 -1.740 5.237  38.334 -2.576 -0.532 2.850 7.924  
2.634   38.714 2  AA_G2C3:DG22DC23_BB   A 2  ? B 23 ? A 3  ? B 22 ? 
1 A C  3  1_555 B DG 10 1_555 A G  4  1_555 B DC 9  1_555 0.299  -2.073 3.101 3.564  17.778 27.619 -6.010 -0.055 1.545 33.103 
-6.636  32.942 3  AA_C3G4:DC21DG22_BB   A 3  ? B 22 ? A 4  ? B 21 ? 
1 A G  4  1_555 B DC 9  1_555 A DT 5  1_555 B DA 8  1_555 0.308  -1.185 3.045 2.307  0.280  34.508 -2.033 -0.185 3.049 0.472  
-3.884  34.584 4  AA_G4DT5:DA20DC21_BB  A 4  ? B 21 ? A 5  ? B 20 ? 
1 A DT 5  1_555 B DA 8  1_555 A DA 6  1_555 B DT 7  1_555 -0.221 -1.114 2.933 7.358  12.984 31.270 -3.535 1.313  2.207 22.550 
-12.778 34.569 5  AA_DT5DA6:DT19DA20_BB A 5  ? B 20 ? A 6  ? B 19 ? 
1 A DA 6  1_555 B DT 7  1_555 A DT 7  1_555 B DA 6  1_555 0.009  0.389  2.762 -0.103 -3.558 42.808 0.828  -0.021 2.723 -4.865 
0.141   42.948 6  AA_DA6DT7:DA18DT19_BB A 6  ? B 19 ? A 7  ? B 18 ? 
1 A DT 7  1_555 B DA 6  1_555 A DA 8  1_555 B DT 5  1_555 0.213  -1.139 2.921 -7.529 13.430 31.070 -3.616 -1.312 2.155 23.361 
13.096  34.591 7  AA_DT7DA8:DT17DA18_BB A 7  ? B 18 ? A 8  ? B 17 ? 
1 A DA 8  1_555 B DT 5  1_555 A DC 9  1_555 B G  4  1_555 -0.311 -1.191 3.046 -2.252 0.437  34.583 -2.063 0.199  3.045 0.734  
3.784   34.656 8  AA_DA8DC9:G16DT17_BB  A 8  ? B 17 ? A 9  ? B 16 ? 
1 A DC 9  1_555 B G  4  1_555 A DG 10 1_555 B C  3  1_555 -0.318 -2.123 3.106 -3.768 18.656 26.807 -6.213 0.069  1.402 35.164 
7.101   32.776 9  AA_DC9DG10:C15G16_BB  A 9  ? B 16 ? A 10 ? B 15 ? 
1 A DG 10 1_555 B C  3  1_555 A DC 11 1_555 B G  2  1_555 -0.208 -1.306 3.050 1.793  5.329  38.571 -2.541 0.509  2.839 8.015  
-2.697  38.963 10 AA_DG10DC11:G14C15_BB A 10 ? B 15 ? A 11 ? B 14 ? 
1 A DC 11 1_555 B G  2  1_555 A DG 12 1_555 B C  1  1_555 0.397  -1.457 2.845 2.816  18.318 29.860 -4.509 -0.338 1.722 31.970 
-4.915  35.032 11 AA_DC11DG12:C13G14_BB A 11 ? B 14 ? A 12 ? B 13 ? 
# 
_atom_sites.entry_id                    104D 
_atom_sites.fract_transf_matrix[1][1]   1.000000 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   1.000000 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   1.000000 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
H 
N 
O 
P 
# 
loop_