data_107D
# 
_entry.id   107D 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.387 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   107D         pdb_0000107d 10.2210/pdb107d/pdb 
WWPDB D_1000170017 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1995-05-08 
2 'Structure model' 1 1 2008-03-24 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2022-02-16 
5 'Structure model' 1 4 2024-03-13 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Database references'       
4 4 'Structure model' 'Derived calculations'      
5 4 'Structure model' Other                       
6 5 'Structure model' 'Data collection'           
7 5 'Structure model' 'Source and taxonomy'       
8 5 'Structure model' 'Structure summary'         
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' database_2            
2 4 'Structure model' pdbx_database_status  
3 4 'Structure model' pdbx_struct_assembly  
4 4 'Structure model' pdbx_struct_oper_list 
5 4 'Structure model' struct_site           
6 5 'Structure model' chem_comp_atom        
7 5 'Structure model' chem_comp_bond        
8 5 'Structure model' entity                
9 5 'Structure model' pdbx_entity_src_syn   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_database_2.pdbx_DOI'                
2 4 'Structure model' '_database_2.pdbx_database_accession' 
3 4 'Structure model' '_pdbx_database_status.process_site'  
4 4 'Structure model' '_struct_site.pdbx_auth_asym_id'      
5 4 'Structure model' '_struct_site.pdbx_auth_comp_id'      
6 4 'Structure model' '_struct_site.pdbx_auth_seq_id'       
7 5 'Structure model' '_entity.details'                     
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        107D 
_pdbx_database_status.recvd_initial_deposition_date   1995-01-17 
_pdbx_database_status.deposit_site                    ? 
_pdbx_database_status.process_site                    BNL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Lin, C.H.'   1 
'Patel, D.J.' 2 
# 
_citation.id                        primary 
_citation.title                     'Solution structure of the covalent duocarmycin A-DNA duplex complex.' 
_citation.journal_abbrev            J.Mol.Biol. 
_citation.journal_volume            248 
_citation.page_first                162 
_citation.page_last                 179 
_citation.year                      1995 
_citation.journal_id_ASTM           JMOBAK 
_citation.country                   UK 
_citation.journal_id_ISSN           0022-2836 
_citation.journal_id_CSD            0070 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   7731041 
_citation.pdbx_database_id_DOI      10.1006/jmbi.1995.0209 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Lin, C.H.'   1 ? 
primary 'Patel, D.J.' 2 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;DNA (5'-D(*CP*CP*TP*TP*TP*TP*C)-3')
;
2039.359 1 ? ? ? ?                        
2 polymer     syn 
;DNA (5'-D(*GP*AP*AP*AP*AP*GP*G)-3')
;
2195.487 1 ? ? ? ?                        
3 non-polymer syn 
;4-HYDROXY-2,8-DIMETHYL-1-OXO-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-1,2,3,6,7,8-HEXAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER
;
509.508  1 ? ? ? 'CHEMICALLY SYNTHESIZED' 
# 
loop_
_entity_keywords.entity_id 
_entity_keywords.text 
1 'DEOXYRIBONUCLEIC ACID' 
2 'DEOXYRIBONUCLEIC ACID' 
# 
loop_
_entity_poly.entity_id 
_entity_poly.type 
_entity_poly.nstd_linkage 
_entity_poly.nstd_monomer 
_entity_poly.pdbx_seq_one_letter_code 
_entity_poly.pdbx_seq_one_letter_code_can 
_entity_poly.pdbx_strand_id 
_entity_poly.pdbx_target_identifier 
1 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DT)(DT)(DT)(DC)' CCTTTTC A ? 
2 polydeoxyribonucleotide no no '(DG)(DA)(DA)(DA)(DA)(DG)(DG)' GAAAAGG B ? 
# 
_pdbx_entity_nonpoly.entity_id   3 
_pdbx_entity_nonpoly.name        
;4-HYDROXY-2,8-DIMETHYL-1-OXO-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-1,2,3,6,7,8-HEXAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER
;
_pdbx_entity_nonpoly.comp_id     DUO 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 DC n 
1 2 DC n 
1 3 DT n 
1 4 DT n 
1 5 DT n 
1 6 DT n 
1 7 DC n 
2 1 DG n 
2 2 DA n 
2 3 DA n 
2 4 DA n 
2 5 DA n 
2 6 DG n 
2 7 DG n 
# 
loop_
_pdbx_entity_src_syn.entity_id 
_pdbx_entity_src_syn.pdbx_src_id 
_pdbx_entity_src_syn.pdbx_alt_source_flag 
_pdbx_entity_src_syn.pdbx_beg_seq_num 
_pdbx_entity_src_syn.pdbx_end_seq_num 
_pdbx_entity_src_syn.organism_scientific 
_pdbx_entity_src_syn.organism_common_name 
_pdbx_entity_src_syn.ncbi_taxonomy_id 
_pdbx_entity_src_syn.details 
1 1 sample ? ? ? ? ? 'CHEMICALLY SYNTHESIZED' 
2 1 sample ? ? ? ? ? 'CHEMICALLY SYNTHESIZED' 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ?               'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ?               'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ?               'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ?               'C10 H15 N2 O8 P' 322.208 
DUO non-polymer   . 
;4-HYDROXY-2,8-DIMETHYL-1-OXO-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-1,2,3,6,7,8-HEXAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER
;
'DUOCARMYCIN A' 'C26 H27 N3 O8'   509.508 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 DC 1 1  1  DC C A . n 
A 1 2 DC 2 2  2  DC C A . n 
A 1 3 DT 3 3  3  DT T A . n 
A 1 4 DT 4 4  4  DT T A . n 
A 1 5 DT 5 5  5  DT T A . n 
A 1 6 DT 6 6  6  DT T A . n 
A 1 7 DC 7 7  7  DC C A . n 
B 2 1 DG 1 8  8  DG G B . n 
B 2 2 DA 2 9  9  DA A B . n 
B 2 3 DA 3 10 10 DA A B . n 
B 2 4 DA 4 11 11 DA A B . n 
B 2 5 DA 5 12 12 DA A B . n 
B 2 6 DG 6 13 13 DG G B . n 
B 2 7 DG 7 14 14 DG G B . n 
# 
_pdbx_nonpoly_scheme.asym_id         C 
_pdbx_nonpoly_scheme.entity_id       3 
_pdbx_nonpoly_scheme.mon_id          DUO 
_pdbx_nonpoly_scheme.ndb_seq_num     1 
_pdbx_nonpoly_scheme.pdb_seq_num     15 
_pdbx_nonpoly_scheme.auth_seq_num    15 
_pdbx_nonpoly_scheme.pdb_mon_id      DUO 
_pdbx_nonpoly_scheme.auth_mon_id     DUO 
_pdbx_nonpoly_scheme.pdb_strand_id   B 
_pdbx_nonpoly_scheme.pdb_ins_code    . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
X-PLOR 'model building' . ? 1 
X-PLOR refinement       . ? 2 
X-PLOR phasing          . ? 3 
# 
_cell.entry_id           107D 
_cell.length_a           1.000 
_cell.length_b           1.000 
_cell.length_c           1.000 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              1 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         107D 
_symmetry.space_group_name_H-M             'P 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                1 
# 
_exptl.entry_id          107D 
_exptl.method            'SOLUTION NMR' 
_exptl.crystals_number   ? 
# 
_database_PDB_matrix.entry_id          107D 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  107D 
_struct.title                     'SOLUTION STRUCTURE OF THE COVALENT DUOCARMYCIN A-DNA DUPLEX COMPLEX' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        107D 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'DNA, DOUBLE HELIX' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
# 
loop_
_struct_ref.id 
_struct_ref.entity_id 
_struct_ref.db_name 
_struct_ref.db_code 
_struct_ref.pdbx_db_accession 
_struct_ref.pdbx_align_begin 
_struct_ref.pdbx_seq_one_letter_code 
_struct_ref.pdbx_db_isoform 
1 1 PDB 107D 107D ? ? ? 
2 2 PDB 107D 107D ? ? ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 107D A 1 ? 7 ? 107D 1 ? 7  ? 1 7  
2 2 107D B 1 ? 7 ? 107D 8 ? 14 ? 8 14 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 1 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog2  hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 1 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog3  hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 1 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog4  hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 2 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog5  hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 2 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog6  hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 2 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog7  hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 3 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog8  hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 3 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog9  hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 4 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 4 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 5 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 5 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog13 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 6 B DA 9  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog14 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 6 B DA 9  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 7 B DG 8  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 7 B DG 8  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 7 B DG 8  1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
_struct_site.id                   AC1 
_struct_site.pdbx_evidence_code   Software 
_struct_site.pdbx_auth_asym_id    B 
_struct_site.pdbx_auth_comp_id    DUO 
_struct_site.pdbx_auth_seq_id     15 
_struct_site.pdbx_auth_ins_code   ? 
_struct_site.pdbx_num_residues    9 
_struct_site.details              'BINDING SITE FOR RESIDUE DUO B 15' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1 AC1 9 DT A 4 ? DT A 4  . ? 1_555 ? 
2 AC1 9 DT A 5 ? DT A 5  . ? 1_555 ? 
3 AC1 9 DT A 6 ? DT A 6  . ? 1_555 ? 
4 AC1 9 DC A 7 ? DC A 7  . ? 1_555 ? 
5 AC1 9 DA B 3 ? DA B 10 . ? 1_555 ? 
6 AC1 9 DA B 4 ? DA B 11 . ? 1_555 ? 
7 AC1 9 DA B 5 ? DA B 12 . ? 1_555 ? 
8 AC1 9 DG B 6 ? DG B 13 . ? 1_555 ? 
9 AC1 9 DG B 7 ? DG B 14 . ? 1_555 ? 
# 
loop_
_pdbx_validate_close_contact.id 
_pdbx_validate_close_contact.PDB_model_num 
_pdbx_validate_close_contact.auth_atom_id_1 
_pdbx_validate_close_contact.auth_asym_id_1 
_pdbx_validate_close_contact.auth_comp_id_1 
_pdbx_validate_close_contact.auth_seq_id_1 
_pdbx_validate_close_contact.PDB_ins_code_1 
_pdbx_validate_close_contact.label_alt_id_1 
_pdbx_validate_close_contact.auth_atom_id_2 
_pdbx_validate_close_contact.auth_asym_id_2 
_pdbx_validate_close_contact.auth_comp_id_2 
_pdbx_validate_close_contact.auth_seq_id_2 
_pdbx_validate_close_contact.PDB_ins_code_2 
_pdbx_validate_close_contact.label_alt_id_2 
_pdbx_validate_close_contact.dist 
1 1 N3 B DA 12 ? ? C10 B DUO 15 ? ? 1.41 
2 2 N3 B DA 12 ? ? C10 B DUO 15 ? ? 1.41 
3 3 N3 B DA 12 ? ? C10 B DUO 15 ? ? 1.41 
4 4 N3 B DA 12 ? ? C10 B DUO 15 ? ? 1.40 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1 1 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.537 1.496 0.041 0.006 N 
2 2 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.534 1.496 0.038 0.006 N 
3 2 C5 A DT 4 ? ? C7 A DT 4 ? ? 1.533 1.496 0.037 0.006 N 
4 2 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.544 1.496 0.048 0.006 N 
5 2 C5 A DT 6 ? ? C7 A DT 6 ? ? 1.532 1.496 0.036 0.006 N 
6 4 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.536 1.496 0.040 0.006 N 
7 4 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.535 1.496 0.039 0.006 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? "C2'" A DC 1  ? ? 100.36 105.90 -5.54 0.80 N 
2  1 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 117.65 108.30 9.35  0.30 N 
3  1 N1    A DC 2  ? ? C2    A DC 2  ? ? O2    A DC 2  ? ? 122.85 118.90 3.95  0.60 N 
4  1 "O4'" A DT 3  ? ? "C1'" A DT 3  ? ? N1    A DT 3  ? ? 113.40 108.30 5.10  0.30 N 
5  1 C6    A DT 3  ? ? C5    A DT 3  ? ? C7    A DT 3  ? ? 119.24 122.90 -3.66 0.60 N 
6  1 "C5'" A DT 4  ? ? "C4'" A DT 4  ? ? "O4'" A DT 4  ? ? 118.34 109.80 8.54  1.10 N 
7  1 N3    A DT 4  ? ? C2    A DT 4  ? ? O2    A DT 4  ? ? 118.65 122.30 -3.65 0.60 N 
8  1 C6    A DT 4  ? ? C5    A DT 4  ? ? C7    A DT 4  ? ? 118.95 122.90 -3.95 0.60 N 
9  1 C6    A DT 5  ? ? C5    A DT 5  ? ? C7    A DT 5  ? ? 119.11 122.90 -3.79 0.60 N 
10 1 "O4'" A DT 6  ? ? "C1'" A DT 6  ? ? N1    A DT 6  ? ? 110.50 108.30 2.20  0.30 N 
11 1 C6    A DT 6  ? ? C5    A DT 6  ? ? C7    A DT 6  ? ? 118.94 122.90 -3.96 0.60 N 
12 1 "O4'" B DG 8  ? ? "C1'" B DG 8  ? ? N9    B DG 8  ? ? 110.15 108.30 1.85  0.30 N 
13 1 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? N9    B DA 10 ? ? 113.47 108.30 5.17  0.30 N 
14 1 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? "C2'" B DA 12 ? ? 100.72 105.90 -5.18 0.80 N 
15 1 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? N9    B DA 12 ? ? 114.19 108.30 5.89  0.30 N 
16 1 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P     B DG 14 ? ? 128.16 119.70 8.46  1.20 Y 
17 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9    B DG 14 ? ? 114.25 108.30 5.95  0.30 N 
18 2 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? "C2'" A DC 1  ? ? 100.74 105.90 -5.16 0.80 N 
19 2 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 112.70 108.30 4.40  0.30 N 
20 2 "O4'" A DC 2  ? ? "C4'" A DC 2  ? ? "C3'" A DC 2  ? ? 109.77 106.00 3.77  0.60 N 
21 2 N1    A DC 2  ? ? C2    A DC 2  ? ? O2    A DC 2  ? ? 123.14 118.90 4.24  0.60 N 
22 2 "C3'" A DT 3  ? ? "O3'" A DT 3  ? ? P     A DT 4  ? ? 127.24 119.70 7.54  1.20 Y 
23 2 C6    A DT 4  ? ? C5    A DT 4  ? ? C7    A DT 4  ? ? 119.18 122.90 -3.72 0.60 N 
24 2 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? N9    B DA 10 ? ? 112.12 108.30 3.82  0.30 N 
25 2 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? N9    B DA 12 ? ? 114.05 108.30 5.75  0.30 N 
26 2 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P     B DG 14 ? ? 127.77 119.70 8.07  1.20 Y 
27 2 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9    B DG 14 ? ? 112.65 108.30 4.35  0.30 N 
28 3 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? "C2'" A DC 1  ? ? 100.63 105.90 -5.27 0.80 N 
29 3 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 118.24 108.30 9.94  0.30 N 
30 3 N1    A DC 2  ? ? C2    A DC 2  ? ? O2    A DC 2  ? ? 122.53 118.90 3.63  0.60 N 
31 3 "O4'" A DT 3  ? ? "C1'" A DT 3  ? ? N1    A DT 3  ? ? 111.04 108.30 2.74  0.30 N 
32 3 "C5'" A DT 4  ? ? "C4'" A DT 4  ? ? "O4'" A DT 4  ? ? 117.23 109.80 7.43  1.10 N 
33 3 C6    A DT 4  ? ? C5    A DT 4  ? ? C7    A DT 4  ? ? 118.96 122.90 -3.94 0.60 N 
34 3 "O4'" B DG 8  ? ? "C1'" B DG 8  ? ? N9    B DG 8  ? ? 110.15 108.30 1.85  0.30 N 
35 3 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? N9    B DA 10 ? ? 111.39 108.30 3.09  0.30 N 
36 3 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? "C2'" B DA 12 ? ? 99.47  105.90 -6.43 0.80 N 
37 3 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? N9    B DA 12 ? ? 114.43 108.30 6.13  0.30 N 
38 3 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P     B DG 14 ? ? 128.67 119.70 8.97  1.20 Y 
39 3 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9    B DG 14 ? ? 113.65 108.30 5.35  0.30 N 
40 4 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? "C2'" A DC 1  ? ? 100.96 105.90 -4.94 0.80 N 
41 4 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 112.76 108.30 4.46  0.30 N 
42 4 "O4'" A DC 2  ? ? "C4'" A DC 2  ? ? "C3'" A DC 2  ? ? 109.69 106.00 3.69  0.60 N 
43 4 N1    A DC 2  ? ? C2    A DC 2  ? ? O2    A DC 2  ? ? 123.08 118.90 4.18  0.60 N 
44 4 "C3'" A DT 3  ? ? "O3'" A DT 3  ? ? P     A DT 4  ? ? 127.59 119.70 7.89  1.20 Y 
45 4 C6    A DT 6  ? ? C5    A DT 6  ? ? C7    A DT 6  ? ? 119.13 122.90 -3.77 0.60 N 
46 4 N1    A DC 7  ? ? C2    A DC 7  ? ? O2    A DC 7  ? ? 122.73 118.90 3.83  0.60 N 
47 4 "C3'" B DG 8  ? ? "O3'" B DG 8  ? ? P     B DA 9  ? ? 127.86 119.70 8.16  1.20 Y 
48 4 "O4'" B DA 9  ? ? "C1'" B DA 9  ? ? N9    B DA 9  ? ? 114.53 108.30 6.23  0.30 N 
49 4 "C3'" B DA 9  ? ? "O3'" B DA 9  ? ? P     B DA 10 ? ? 127.49 119.70 7.79  1.20 Y 
50 4 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? N9    B DA 10 ? ? 114.50 108.30 6.20  0.30 N 
51 4 "C4'" B DA 12 ? ? "C3'" B DA 12 ? ? "C2'" B DA 12 ? ? 97.88  102.20 -4.32 0.70 N 
52 4 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? "C2'" B DA 12 ? ? 100.09 105.90 -5.81 0.80 N 
53 4 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? N9    B DA 12 ? ? 110.54 108.30 2.24  0.30 N 
54 4 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P     B DG 14 ? ? 127.62 119.70 7.92  1.20 Y 
55 4 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9    B DG 14 ? ? 112.40 108.30 4.10  0.30 N 
# 
_pdbx_nmr_ensemble.entry_id                                      107D 
_pdbx_nmr_ensemble.conformers_calculated_total_number            ? 
_pdbx_nmr_ensemble.conformers_submitted_total_number             4 
_pdbx_nmr_ensemble.conformer_selection_criteria                  ? 
_pdbx_nmr_ensemble.average_constraints_per_residue               ? 
_pdbx_nmr_ensemble.average_constraint_violations_per_residue     ? 
_pdbx_nmr_ensemble.maximum_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.average_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.distance_constraint_violation_method          ? 
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method     ? 
# 
_pdbx_nmr_details.entry_id   107D 
_pdbx_nmr_details.text       'DUOCARMYCIN A WAS PROVIDED BY KYOWA HAKKO KOGYO CO., JAPAN.' 
# 
_pdbx_nmr_refine.entry_id           107D 
_pdbx_nmr_refine.method             'MOLECULAR DYNAMICS, MATRIX RELAXATION' 
_pdbx_nmr_refine.details            
;TWO STARTING STRUCTURES WERE GENERATED BY MANUALLY DOCKING THE DRUG ONTO A- AND B-FORM DNA USING INSIGHT II AND WERE SUBSEQUENTLY REFINED BY DISTANCE-RESTRAINED MOLECULAR DYNAMICS USING A SET OF INTER-PROTON DISTANCE RESTRAINTS DERIVED FROM THE 2-D NMR DATA. ONE INITIAL VELOCITY SEED WAS USED FOR EACH STARTING STRUCTURE WHICH YIELDS TWO DISTANCE-REFINED STRUCTURES. THEY WERE REFINED FURTHER WITH TWO INITIAL VELOCITIES USING RELAXATION-MATRIX BASED NOE INTENSITY-RESTRAINED MOLECULAR DYNAMICS TO GENERATE THE FINAL FOUR STRUCTURES. THE FINAL FOUR STRUCTURES WERE OBTAINED BY TAKING THE AVERAGE COORDINATES OF THE LAST 1.0 PS OF THE DYNAMICS DURING RELAXATION MATRIX REFINEMENT AND ENERGY MINIMIZED. THE R(1/6) VALUE WAS USED TO REFINE THE STRUCTURE DURING RELAXATION MATRIX REFINEMENT. THE SUMMATIONS RUN THROUGH ALL OBSERVED, QUANTIFIABLE NOE CROSSPEAKS IN NOESY SPECTRA RECORDED IN D2O AND MIXING TIMES OF 40, 80, 120 AND 160 MS. THE R(1/6) FACTOR AND THE RMS DEVIATIONS FROM IDEAL GEOMETRY FOR THE FOUR FINAL STRUCTURES ARE: MODEL1-MODEL4 R(1/6) FACTOR 0.042-0.045 BOND (ANG) 0.009-0.010 ANGLES (DEG) 3.078-3.780 IMPROPERS (DEG) 0.310-0.321. THE STRUCTURE HAS APPROXIMATE TWO-FOLD SYMMETRY RELATING THE TWO STRANDS OF THE DNA WITH THE SYMMETRY AXIS PERPENDICULAR TO THE HELICAL AXIS.  THE TRANSFORMATION MATRIX WAS CALCULATED FOR THE AVERAGED STRUCTURE OF THE FOUR MODELS.
;
_pdbx_nmr_refine.software_ordinal   1 
# 
_pdbx_nmr_software.name             X-PLOR 
_pdbx_nmr_software.version          ? 
_pdbx_nmr_software.classification   refinement 
_pdbx_nmr_software.authors          BRUNGER 
_pdbx_nmr_software.ordinal          1 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA  OP3    O N N 1   
DA  P      P N N 2   
DA  OP1    O N N 3   
DA  OP2    O N N 4   
DA  "O5'"  O N N 5   
DA  "C5'"  C N N 6   
DA  "C4'"  C N R 7   
DA  "O4'"  O N N 8   
DA  "C3'"  C N S 9   
DA  "O3'"  O N N 10  
DA  "C2'"  C N N 11  
DA  "C1'"  C N R 12  
DA  N9     N Y N 13  
DA  C8     C Y N 14  
DA  N7     N Y N 15  
DA  C5     C Y N 16  
DA  C6     C Y N 17  
DA  N6     N N N 18  
DA  N1     N Y N 19  
DA  C2     C Y N 20  
DA  N3     N Y N 21  
DA  C4     C Y N 22  
DA  HOP3   H N N 23  
DA  HOP2   H N N 24  
DA  "H5'"  H N N 25  
DA  "H5''" H N N 26  
DA  "H4'"  H N N 27  
DA  "H3'"  H N N 28  
DA  "HO3'" H N N 29  
DA  "H2'"  H N N 30  
DA  "H2''" H N N 31  
DA  "H1'"  H N N 32  
DA  H8     H N N 33  
DA  H61    H N N 34  
DA  H62    H N N 35  
DA  H2     H N N 36  
DC  OP3    O N N 37  
DC  P      P N N 38  
DC  OP1    O N N 39  
DC  OP2    O N N 40  
DC  "O5'"  O N N 41  
DC  "C5'"  C N N 42  
DC  "C4'"  C N R 43  
DC  "O4'"  O N N 44  
DC  "C3'"  C N S 45  
DC  "O3'"  O N N 46  
DC  "C2'"  C N N 47  
DC  "C1'"  C N R 48  
DC  N1     N N N 49  
DC  C2     C N N 50  
DC  O2     O N N 51  
DC  N3     N N N 52  
DC  C4     C N N 53  
DC  N4     N N N 54  
DC  C5     C N N 55  
DC  C6     C N N 56  
DC  HOP3   H N N 57  
DC  HOP2   H N N 58  
DC  "H5'"  H N N 59  
DC  "H5''" H N N 60  
DC  "H4'"  H N N 61  
DC  "H3'"  H N N 62  
DC  "HO3'" H N N 63  
DC  "H2'"  H N N 64  
DC  "H2''" H N N 65  
DC  "H1'"  H N N 66  
DC  H41    H N N 67  
DC  H42    H N N 68  
DC  H5     H N N 69  
DC  H6     H N N 70  
DG  OP3    O N N 71  
DG  P      P N N 72  
DG  OP1    O N N 73  
DG  OP2    O N N 74  
DG  "O5'"  O N N 75  
DG  "C5'"  C N N 76  
DG  "C4'"  C N R 77  
DG  "O4'"  O N N 78  
DG  "C3'"  C N S 79  
DG  "O3'"  O N N 80  
DG  "C2'"  C N N 81  
DG  "C1'"  C N R 82  
DG  N9     N Y N 83  
DG  C8     C Y N 84  
DG  N7     N Y N 85  
DG  C5     C Y N 86  
DG  C6     C N N 87  
DG  O6     O N N 88  
DG  N1     N N N 89  
DG  C2     C N N 90  
DG  N2     N N N 91  
DG  N3     N N N 92  
DG  C4     C Y N 93  
DG  HOP3   H N N 94  
DG  HOP2   H N N 95  
DG  "H5'"  H N N 96  
DG  "H5''" H N N 97  
DG  "H4'"  H N N 98  
DG  "H3'"  H N N 99  
DG  "HO3'" H N N 100 
DG  "H2'"  H N N 101 
DG  "H2''" H N N 102 
DG  "H1'"  H N N 103 
DG  H8     H N N 104 
DG  H1     H N N 105 
DG  H21    H N N 106 
DG  H22    H N N 107 
DT  OP3    O N N 108 
DT  P      P N N 109 
DT  OP1    O N N 110 
DT  OP2    O N N 111 
DT  "O5'"  O N N 112 
DT  "C5'"  C N N 113 
DT  "C4'"  C N R 114 
DT  "O4'"  O N N 115 
DT  "C3'"  C N S 116 
DT  "O3'"  O N N 117 
DT  "C2'"  C N N 118 
DT  "C1'"  C N R 119 
DT  N1     N N N 120 
DT  C2     C N N 121 
DT  O2     O N N 122 
DT  N3     N N N 123 
DT  C4     C N N 124 
DT  O4     O N N 125 
DT  C5     C N N 126 
DT  C7     C N N 127 
DT  C6     C N N 128 
DT  HOP3   H N N 129 
DT  HOP2   H N N 130 
DT  "H5'"  H N N 131 
DT  "H5''" H N N 132 
DT  "H4'"  H N N 133 
DT  "H3'"  H N N 134 
DT  "HO3'" H N N 135 
DT  "H2'"  H N N 136 
DT  "H2''" H N N 137 
DT  "H1'"  H N N 138 
DT  H3     H N N 139 
DT  H71    H N N 140 
DT  H72    H N N 141 
DT  H73    H N N 142 
DT  H6     H N N 143 
DUO N1     N N N 144 
DUO C2     C N R 145 
DUO C3     C N N 146 
DUO C4     C Y N 147 
DUO C5     C Y N 148 
DUO C6     C Y N 149 
DUO C7     C Y N 150 
DUO C8     C Y N 151 
DUO C9     C Y N 152 
DUO C10    C N N 153 
DUO C11    C N S 154 
DUO C12    C N N 155 
DUO N13    N N N 156 
DUO C14    C N N 157 
DUO C15    C Y N 158 
DUO C16    C Y N 159 
DUO C17    C Y N 160 
DUO C18    C Y N 161 
DUO C19    C Y N 162 
DUO C20    C Y N 163 
DUO C21    C Y N 164 
DUO C22    C Y N 165 
DUO N23    N Y N 166 
DUO O24    O N N 167 
DUO C25    C N N 168 
DUO O26    O N N 169 
DUO C27    C N N 170 
DUO O28    O N N 171 
DUO C29    C N N 172 
DUO O30    O N N 173 
DUO O31    O N N 174 
DUO O32    O N N 175 
DUO C33    C N N 176 
DUO C34    C N N 177 
DUO O35    O N N 178 
DUO O36    O N N 179 
DUO C37    C N N 180 
DUO H1     H N N 181 
DUO H7     H N N 182 
DUO H101   H N N 183 
DUO H102   H N N 184 
DUO H103   H N N 185 
DUO H11    H N N 186 
DUO H121   H N N 187 
DUO H122   H N N 188 
DUO H16    H N N 189 
DUO H18    H N N 190 
DUO H23    H N N 191 
DUO H251   H N N 192 
DUO H252   H N N 193 
DUO H253   H N N 194 
DUO H271   H N N 195 
DUO H272   H N N 196 
DUO H273   H N N 197 
DUO H291   H N N 198 
DUO H292   H N N 199 
DUO H293   H N N 200 
DUO H31    H N N 201 
DUO H331   H N N 202 
DUO H332   H N N 203 
DUO H333   H N N 204 
DUO H371   H N N 205 
DUO H372   H N N 206 
DUO H373   H N N 207 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DT  OP3   P      sing N N 113 
DT  OP3   HOP3   sing N N 114 
DT  P     OP1    doub N N 115 
DT  P     OP2    sing N N 116 
DT  P     "O5'"  sing N N 117 
DT  OP2   HOP2   sing N N 118 
DT  "O5'" "C5'"  sing N N 119 
DT  "C5'" "C4'"  sing N N 120 
DT  "C5'" "H5'"  sing N N 121 
DT  "C5'" "H5''" sing N N 122 
DT  "C4'" "O4'"  sing N N 123 
DT  "C4'" "C3'"  sing N N 124 
DT  "C4'" "H4'"  sing N N 125 
DT  "O4'" "C1'"  sing N N 126 
DT  "C3'" "O3'"  sing N N 127 
DT  "C3'" "C2'"  sing N N 128 
DT  "C3'" "H3'"  sing N N 129 
DT  "O3'" "HO3'" sing N N 130 
DT  "C2'" "C1'"  sing N N 131 
DT  "C2'" "H2'"  sing N N 132 
DT  "C2'" "H2''" sing N N 133 
DT  "C1'" N1     sing N N 134 
DT  "C1'" "H1'"  sing N N 135 
DT  N1    C2     sing N N 136 
DT  N1    C6     sing N N 137 
DT  C2    O2     doub N N 138 
DT  C2    N3     sing N N 139 
DT  N3    C4     sing N N 140 
DT  N3    H3     sing N N 141 
DT  C4    O4     doub N N 142 
DT  C4    C5     sing N N 143 
DT  C5    C7     sing N N 144 
DT  C5    C6     doub N N 145 
DT  C7    H71    sing N N 146 
DT  C7    H72    sing N N 147 
DT  C7    H73    sing N N 148 
DT  C6    H6     sing N N 149 
DUO N1    C2     sing N N 150 
DUO N1    C5     sing N N 151 
DUO N1    H1     sing N N 152 
DUO C2    C3     sing N N 153 
DUO C2    C33    sing N N 154 
DUO C2    C34    sing N N 155 
DUO C3    C4     sing N N 156 
DUO C3    O32    doub N N 157 
DUO C4    C5     doub Y N 158 
DUO C4    C9     sing Y N 159 
DUO C5    C6     sing Y N 160 
DUO C6    C7     doub Y N 161 
DUO C6    O31    sing N N 162 
DUO C7    C8     sing Y N 163 
DUO C7    H7     sing N N 164 
DUO C8    C9     doub Y N 165 
DUO C8    N13    sing N N 166 
DUO C9    C11    sing N N 167 
DUO C10   C11    sing N N 168 
DUO C10   H101   sing N N 169 
DUO C10   H102   sing N N 170 
DUO C10   H103   sing N N 171 
DUO C11   C12    sing N N 172 
DUO C11   H11    sing N N 173 
DUO C12   N13    sing N N 174 
DUO C12   H121   sing N N 175 
DUO C12   H122   sing N N 176 
DUO N13   C14    sing N N 177 
DUO C14   C15    sing N N 178 
DUO C14   O30    doub N N 179 
DUO C15   C16    doub Y N 180 
DUO C15   N23    sing Y N 181 
DUO C16   C17    sing Y N 182 
DUO C16   H16    sing N N 183 
DUO C17   C18    doub Y N 184 
DUO C17   C22    sing Y N 185 
DUO C18   C19    sing Y N 186 
DUO C18   H18    sing N N 187 
DUO C19   C20    doub Y N 188 
DUO C19   O24    sing N N 189 
DUO C20   C21    sing Y N 190 
DUO C20   O26    sing N N 191 
DUO C21   C22    doub Y N 192 
DUO C21   O28    sing N N 193 
DUO C22   N23    sing Y N 194 
DUO N23   H23    sing N N 195 
DUO O24   C25    sing N N 196 
DUO C25   H251   sing N N 197 
DUO C25   H252   sing N N 198 
DUO C25   H253   sing N N 199 
DUO O26   C27    sing N N 200 
DUO C27   H271   sing N N 201 
DUO C27   H272   sing N N 202 
DUO C27   H273   sing N N 203 
DUO O28   C29    sing N N 204 
DUO C29   H291   sing N N 205 
DUO C29   H292   sing N N 206 
DUO C29   H293   sing N N 207 
DUO O31   H31    sing N N 208 
DUO C33   H331   sing N N 209 
DUO C33   H332   sing N N 210 
DUO C33   H333   sing N N 211 
DUO C34   O35    doub N N 212 
DUO C34   O36    sing N N 213 
DUO O36   C37    sing N N 214 
DUO C37   H371   sing N N 215 
DUO C37   H372   sing N N 216 
DUO C37   H373   sing N N 217 
# 
_ndb_struct_conf_na.entry_id   107D 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1 1_555 B DG 7 1_555 0.473  -0.264 -0.285 3.839  -3.256  -0.998 1 A_DC1:DG14_B A 1 ? B 14 ? 19 1 
1 A DC 2 1_555 B DG 6 1_555 0.466  -0.220 -0.032 -1.193 -6.733  -2.815 2 A_DC2:DG13_B A 2 ? B 13 ? 19 1 
1 A DT 3 1_555 B DA 5 1_555 -0.679 0.151  -0.275 2.465  -14.247 -9.859 3 A_DT3:DA12_B A 3 ? B 12 ? 20 1 
1 A DT 4 1_555 B DA 4 1_555 -0.233 -0.117 -0.064 7.883  -27.323 6.447  4 A_DT4:DA11_B A 4 ? B 11 ? 20 1 
1 A DT 5 1_555 B DA 3 1_555 -0.126 -0.207 -0.100 -3.567 -26.784 7.911  5 A_DT5:DA10_B A 5 ? B 10 ? 20 1 
1 A DT 6 1_555 B DA 2 1_555 0.217  -0.131 0.212  -4.502 -6.098  -4.255 6 A_DT6:DA9_B  A 6 ? B 9  ? 20 1 
1 A DC 7 1_555 B DG 1 1_555 0.738  -0.307 -0.343 5.168  -10.630 -0.701 7 A_DC7:DG8_B  A 7 ? B 8  ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1 1_555 B DG 7 1_555 A DC 2 1_555 B DG 6 1_555 -1.346 -0.311 3.455 -3.521 -0.926 37.246 -0.354 1.601  3.569 -1.446 5.497   
37.417 1 AA_DC1DC2:DG13DG14_BB A 1 ? B 14 ? A 2 ? B 13 ? 
1 A DC 2 1_555 B DG 6 1_555 A DT 3 1_555 B DA 5 1_555 0.360  1.543  3.278 6.643  -0.783 30.874 2.983  0.582  3.243 -1.450 -12.297 
31.573 2 AA_DC2DT3:DA12DG13_BB A 2 ? B 13 ? A 3 ? B 12 ? 
1 A DT 3 1_555 B DA 5 1_555 A DT 4 1_555 B DA 4 1_555 0.726  -0.148 2.871 -0.712 2.089  33.808 -0.548 -1.347 2.841 3.588  1.222   
33.878 3 AA_DT3DT4:DA11DA12_BB A 3 ? B 12 ? A 4 ? B 11 ? 
1 A DT 4 1_555 B DA 4 1_555 A DT 5 1_555 B DA 3 1_555 0.440  0.652  3.313 6.797  -3.434 42.674 1.223  0.077  3.283 -4.675 -9.252  
43.317 4 AA_DT4DT5:DA10DA11_BB A 4 ? B 11 ? A 5 ? B 10 ? 
1 A DT 5 1_555 B DA 3 1_555 A DT 6 1_555 B DA 2 1_555 -0.207 -0.127 3.157 -1.785 0.788  33.587 -0.344 0.076  3.160 1.362  3.085   
33.642 5 AA_DT5DT6:DA9DA10_BB  A 5 ? B 10 ? A 6 ? B 9  ? 
1 A DT 6 1_555 B DA 2 1_555 A DC 7 1_555 B DG 1 1_555 1.084  0.046  2.847 6.945  -0.551 40.626 0.119  -0.868 2.984 -0.786 -9.914  
41.194 6 AA_DT6DC7:DG8DA9_BB   A 6 ? B 9  ? A 7 ? B 8  ? 
# 
_atom_sites.entry_id                    107D 
_atom_sites.fract_transf_matrix[1][1]   1.000000 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   1.000000 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   1.000000 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
H 
N 
O 
P 
# 
loop_