data_10SD # _entry.id 10SD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.415 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 10SD pdb_000010sd 10.2210/pdb10sd/pdb WWPDB D_1000304887 ? ? EMDB EMD-75431 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-06-17 ? 2 'EM metadata' 1 0 2026-06-17 ? 3 FSC 1 0 2026-06-17 ? 4 'Half map' 1 0 2026-06-17 1 5 'Half map' 1 0 2026-06-17 2 6 Image 1 0 2026-06-17 ? 7 'Primary map' 1 0 2026-06-17 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 10SD _pdbx_database_status.recvd_initial_deposition_date 2026-02-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'The cryoEM structure of T10 type2 nanofiber' _pdbx_database_related.db_id EMD-75431 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email Yang.Yang@vai.org _pdbx_contact_author.name_first Yang _pdbx_contact_author.name_last Yang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-2238-6437 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, H.' 1 ? 'Yang, Y.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acs Appl Bio Mater' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2576-6422 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first 4242 _citation.page_last 4257 _citation.title 'Tailoring Avidity through Morphology: Structure-Avidity Relationship in CD38-Binding Nanofiber Radiotracers.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acsabm.6c00348 _citation.pdbx_database_id_PubMed 42011845 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Godbe, J.M.' 1 0000-0002-8769-2083 primary 'Zhang, H.' 2 ? primary 'Sharma, A.K.' 3 ? primary 'Ernst, K.N.' 4 ? primary 'Jing, Z.' 5 ? primary 'Dyer, M.R.' 6 0009-0006-4824-5076 primary 'Prior, J.L.' 7 ? primary 'Teubner, E.' 8 ? primary 'Manion, B.' 9 ? primary 'Tang, R.' 10 0000-0002-2734-1003 primary 'Yang, Y.' 11 ? primary 'Shokeen, M.' 12 0000-0001-8114-9584 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'T10 type 2 nanofiber' 1070.266 16 ? ? ? 'HYPIVIGGSK(NH2)' 2 non-polymer syn 'DECANOIC ACID' 172.265 16 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'HYPIVIGGSK(NH2)' _entity_poly.pdbx_seq_one_letter_code_can HYPIVIGGSKX _entity_poly.pdbx_strand_id B,C,D,E,F,G,H,I,J,K,L,M,O,P,Q,A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'DECANOIC ACID' _pdbx_entity_nonpoly.comp_id DKA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 TYR n 1 3 PRO n 1 4 ILE n 1 5 VAL n 1 6 ILE n 1 7 GLY n 1 8 GLY n 1 9 SER n 1 10 LYS n 1 11 NH2 n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 11 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DKA non-polymer . 'DECANOIC ACID' ? 'C10 H20 O2' 172.265 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 2 2 HIS HIS B . n A 1 2 TYR 2 3 3 TYR TYR B . n A 1 3 PRO 3 4 4 PRO PRO B . n A 1 4 ILE 4 5 5 ILE ILE B . n A 1 5 VAL 5 6 6 VAL VAL B . n A 1 6 ILE 6 7 7 ILE ILE B . n A 1 7 GLY 7 8 8 GLY GLY B . n A 1 8 GLY 8 9 9 GLY GLY B . n A 1 9 SER 9 10 10 SER SER B . n A 1 10 LYS 10 11 11 LYS LIG B . n A 1 11 NH2 11 12 11 NH2 LIG B . n B 1 1 HIS 1 2 2 HIS HIS C . n B 1 2 TYR 2 3 3 TYR TYR C . n B 1 3 PRO 3 4 4 PRO PRO C . n B 1 4 ILE 4 5 5 ILE ILE C . n B 1 5 VAL 5 6 6 VAL VAL C . n B 1 6 ILE 6 7 7 ILE ILE C . n B 1 7 GLY 7 8 8 GLY GLY C . n B 1 8 GLY 8 9 9 GLY GLY C . n B 1 9 SER 9 10 10 SER SER C . n B 1 10 LYS 10 11 11 LYS LIG C . n B 1 11 NH2 11 12 11 NH2 LIG C . n C 1 1 HIS 1 2 2 HIS HIS D . n C 1 2 TYR 2 3 3 TYR TYR D . n C 1 3 PRO 3 4 4 PRO PRO D . n C 1 4 ILE 4 5 5 ILE ILE D . n C 1 5 VAL 5 6 6 VAL VAL D . n C 1 6 ILE 6 7 7 ILE ILE D . n C 1 7 GLY 7 8 8 GLY GLY D . n C 1 8 GLY 8 9 9 GLY GLY D . n C 1 9 SER 9 10 10 SER SER D . n C 1 10 LYS 10 11 11 LYS LIG D . n C 1 11 NH2 11 12 11 NH2 LIG D . n D 1 1 HIS 1 2 2 HIS HIS E . n D 1 2 TYR 2 3 3 TYR TYR E . n D 1 3 PRO 3 4 4 PRO PRO E . n D 1 4 ILE 4 5 5 ILE ILE E . n D 1 5 VAL 5 6 6 VAL VAL E . n D 1 6 ILE 6 7 7 ILE ILE E . n D 1 7 GLY 7 8 8 GLY GLY E . n D 1 8 GLY 8 9 9 GLY GLY E . n D 1 9 SER 9 10 10 SER SER E . n D 1 10 LYS 10 11 11 LYS LIG E . n D 1 11 NH2 11 12 11 NH2 LIG E . n E 1 1 HIS 1 2 2 HIS HIS F . n E 1 2 TYR 2 3 3 TYR TYR F . n E 1 3 PRO 3 4 4 PRO PRO F . n E 1 4 ILE 4 5 5 ILE ILE F . n E 1 5 VAL 5 6 6 VAL VAL F . n E 1 6 ILE 6 7 7 ILE ILE F . n E 1 7 GLY 7 8 8 GLY GLY F . n E 1 8 GLY 8 9 9 GLY GLY F . n E 1 9 SER 9 10 10 SER SER F . n E 1 10 LYS 10 11 11 LYS LIG F . n E 1 11 NH2 11 12 11 NH2 LIG F . n F 1 1 HIS 1 2 2 HIS HIS G . n F 1 2 TYR 2 3 3 TYR TYR G . n F 1 3 PRO 3 4 4 PRO PRO G . n F 1 4 ILE 4 5 5 ILE ILE G . n F 1 5 VAL 5 6 6 VAL VAL G . n F 1 6 ILE 6 7 7 ILE ILE G . n F 1 7 GLY 7 8 8 GLY GLY G . n F 1 8 GLY 8 9 9 GLY GLY G . n F 1 9 SER 9 10 10 SER SER G . n F 1 10 LYS 10 11 11 LYS LIG G . n F 1 11 NH2 11 12 11 NH2 LIG G . n G 1 1 HIS 1 2 2 HIS HIS H . n G 1 2 TYR 2 3 3 TYR TYR H . n G 1 3 PRO 3 4 4 PRO PRO H . n G 1 4 ILE 4 5 5 ILE ILE H . n G 1 5 VAL 5 6 6 VAL VAL H . n G 1 6 ILE 6 7 7 ILE ILE H . n G 1 7 GLY 7 8 8 GLY GLY H . n G 1 8 GLY 8 9 9 GLY GLY H . n G 1 9 SER 9 10 10 SER SER H . n G 1 10 LYS 10 11 11 LYS LIG H . n G 1 11 NH2 11 12 11 NH2 LIG H . n H 1 1 HIS 1 2 2 HIS HIS I . n H 1 2 TYR 2 3 3 TYR TYR I . n H 1 3 PRO 3 4 4 PRO PRO I . n H 1 4 ILE 4 5 5 ILE ILE I . n H 1 5 VAL 5 6 6 VAL VAL I . n H 1 6 ILE 6 7 7 ILE ILE I . n H 1 7 GLY 7 8 8 GLY GLY I . n H 1 8 GLY 8 9 9 GLY GLY I . n H 1 9 SER 9 10 10 SER SER I . n H 1 10 LYS 10 11 11 LYS LIG I . n H 1 11 NH2 11 12 11 NH2 LIG I . n I 1 1 HIS 1 2 2 HIS HIS J . n I 1 2 TYR 2 3 3 TYR TYR J . n I 1 3 PRO 3 4 4 PRO PRO J . n I 1 4 ILE 4 5 5 ILE ILE J . n I 1 5 VAL 5 6 6 VAL VAL J . n I 1 6 ILE 6 7 7 ILE ILE J . n I 1 7 GLY 7 8 8 GLY GLY J . n I 1 8 GLY 8 9 9 GLY GLY J . n I 1 9 SER 9 10 10 SER SER J . n I 1 10 LYS 10 11 11 LYS LIG J . n I 1 11 NH2 11 12 11 NH2 LIG J . n J 1 1 HIS 1 2 2 HIS HIS K . n J 1 2 TYR 2 3 3 TYR TYR K . n J 1 3 PRO 3 4 4 PRO PRO K . n J 1 4 ILE 4 5 5 ILE ILE K . n J 1 5 VAL 5 6 6 VAL VAL K . n J 1 6 ILE 6 7 7 ILE ILE K . n J 1 7 GLY 7 8 8 GLY GLY K . n J 1 8 GLY 8 9 9 GLY GLY K . n J 1 9 SER 9 10 10 SER SER K . n J 1 10 LYS 10 11 11 LYS LIG K . n J 1 11 NH2 11 12 11 NH2 LIG K . n K 1 1 HIS 1 2 2 HIS HIS L . n K 1 2 TYR 2 3 3 TYR TYR L . n K 1 3 PRO 3 4 4 PRO PRO L . n K 1 4 ILE 4 5 5 ILE ILE L . n K 1 5 VAL 5 6 6 VAL VAL L . n K 1 6 ILE 6 7 7 ILE ILE L . n K 1 7 GLY 7 8 8 GLY GLY L . n K 1 8 GLY 8 9 9 GLY GLY L . n K 1 9 SER 9 10 10 SER SER L . n K 1 10 LYS 10 11 11 LYS LIG L . n K 1 11 NH2 11 12 11 NH2 LIG L . n L 1 1 HIS 1 2 2 HIS HIS M . n L 1 2 TYR 2 3 3 TYR TYR M . n L 1 3 PRO 3 4 4 PRO PRO M . n L 1 4 ILE 4 5 5 ILE ILE M . n L 1 5 VAL 5 6 6 VAL VAL M . n L 1 6 ILE 6 7 7 ILE ILE M . n L 1 7 GLY 7 8 8 GLY GLY M . n L 1 8 GLY 8 9 9 GLY GLY M . n L 1 9 SER 9 10 10 SER SER M . n L 1 10 LYS 10 11 11 LYS LIG M . n L 1 11 NH2 11 12 11 NH2 LIG M . n M 1 1 HIS 1 2 2 HIS HIS O . n M 1 2 TYR 2 3 3 TYR TYR O . n M 1 3 PRO 3 4 4 PRO PRO O . n M 1 4 ILE 4 5 5 ILE ILE O . n M 1 5 VAL 5 6 6 VAL VAL O . n M 1 6 ILE 6 7 7 ILE ILE O . n M 1 7 GLY 7 8 8 GLY GLY O . n M 1 8 GLY 8 9 9 GLY GLY O . n M 1 9 SER 9 10 10 SER SER O . n M 1 10 LYS 10 11 11 LYS LIG O . n M 1 11 NH2 11 12 11 NH2 LIG O . n N 1 1 HIS 1 2 2 HIS HIS P . n N 1 2 TYR 2 3 3 TYR TYR P . n N 1 3 PRO 3 4 4 PRO PRO P . n N 1 4 ILE 4 5 5 ILE ILE P . n N 1 5 VAL 5 6 6 VAL VAL P . n N 1 6 ILE 6 7 7 ILE ILE P . n N 1 7 GLY 7 8 8 GLY GLY P . n N 1 8 GLY 8 9 9 GLY GLY P . n N 1 9 SER 9 10 10 SER SER P . n N 1 10 LYS 10 11 11 LYS LIG P . n N 1 11 NH2 11 12 11 NH2 LIG P . n O 1 1 HIS 1 2 2 HIS HIS Q . n O 1 2 TYR 2 3 3 TYR TYR Q . n O 1 3 PRO 3 4 4 PRO PRO Q . n O 1 4 ILE 4 5 5 ILE ILE Q . n O 1 5 VAL 5 6 6 VAL VAL Q . n O 1 6 ILE 6 7 7 ILE ILE Q . n O 1 7 GLY 7 8 8 GLY GLY Q . n O 1 8 GLY 8 9 9 GLY GLY Q . n O 1 9 SER 9 10 10 SER SER Q . n O 1 10 LYS 10 11 11 LYS LIG Q . n O 1 11 NH2 11 12 11 NH2 LIG Q . n P 1 1 HIS 1 2 2 HIS HIS A . n P 1 2 TYR 2 3 3 TYR TYR A . n P 1 3 PRO 3 4 4 PRO PRO A . n P 1 4 ILE 4 5 5 ILE ILE A . n P 1 5 VAL 5 6 6 VAL VAL A . n P 1 6 ILE 6 7 7 ILE ILE A . n P 1 7 GLY 7 8 8 GLY GLY A . n P 1 8 GLY 8 9 9 GLY GLY A . n P 1 9 SER 9 10 10 SER SER A . n P 1 10 LYS 10 11 11 LYS LIG A . n P 1 11 NH2 11 12 11 NH2 LIG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 DKA 1 101 11 DKA LIG B . R 2 DKA 1 101 11 DKA LIG C . S 2 DKA 1 101 11 DKA LIG D . T 2 DKA 1 101 11 DKA LIG E . U 2 DKA 1 101 11 DKA LIG F . V 2 DKA 1 101 11 DKA LIG G . W 2 DKA 1 101 11 DKA LIG H . X 2 DKA 1 101 11 DKA LIG I . Y 2 DKA 1 101 11 DKA LIG J . Z 2 DKA 1 101 11 DKA LIG K . AA 2 DKA 1 101 11 DKA LIG L . BA 2 DKA 1 101 11 DKA LIG M . CA 2 DKA 1 101 11 DKA LIG O . DA 2 DKA 1 101 11 DKA LIG P . EA 2 DKA 1 101 11 DKA LIG Q . FA 2 DKA 1 101 11 DKA LIG A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 F DKA 101 ? C5 ? U DKA 1 C5 2 1 N 1 F DKA 101 ? C6 ? U DKA 1 C6 3 1 N 1 F DKA 101 ? C7 ? U DKA 1 C7 4 1 N 1 F DKA 101 ? C8 ? U DKA 1 C8 5 1 N 1 F DKA 101 ? C9 ? U DKA 1 C9 6 1 N 1 F DKA 101 ? C10 ? U DKA 1 C10 7 1 N 1 G DKA 101 ? C10 ? V DKA 1 C10 8 1 N 1 H DKA 101 ? C3 ? W DKA 1 C3 9 1 N 1 H DKA 101 ? C4 ? W DKA 1 C4 10 1 N 1 H DKA 101 ? C5 ? W DKA 1 C5 11 1 N 1 H DKA 101 ? C6 ? W DKA 1 C6 12 1 N 1 H DKA 101 ? C7 ? W DKA 1 C7 13 1 N 1 H DKA 101 ? C8 ? W DKA 1 C8 14 1 N 1 H DKA 101 ? C9 ? W DKA 1 C9 15 1 N 1 H DKA 101 ? C10 ? W DKA 1 C10 16 1 N 1 I DKA 101 ? C7 ? X DKA 1 C7 17 1 N 1 I DKA 101 ? C8 ? X DKA 1 C8 18 1 N 1 I DKA 101 ? C9 ? X DKA 1 C9 19 1 N 1 I DKA 101 ? C10 ? X DKA 1 C10 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 10SD _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 10SD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 10SD _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 111.112 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.748 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 10SD _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.11 _refine.ls_d_res_low 115.91 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 60900 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.00 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.48104 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.48104 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'PARAMETERS FOR MASK CACLULATION' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.236 _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B 25.262 _refine.overall_SU_ML 0.433 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high . _refine_hist.d_res_low . _refine_hist.number_atoms_solvent ? _refine_hist.number_atoms_total 1373 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein ? _refine_hist.pdbx_number_atoms_nucleic_acid ? _refine_hist.pdbx_number_atoms_ligand ? _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.008 0.012 1405 ? r_bond_refined_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.001 0.016 1418 ? r_bond_other_d ? ? ? 'ELECTRON MICROSCOPY' ? 1.741 1.816 1853 ? r_angle_refined_deg ? ? ? 'ELECTRON MICROSCOPY' ? 0.854 1.682 3345 ? r_angle_other_deg ? ? ? 'ELECTRON MICROSCOPY' ? 5.061 5.000 144 ? r_dihedral_angle_1_deg ? ? ? 'ELECTRON MICROSCOPY' ? 8.959 5.000 16 ? r_dihedral_angle_2_deg ? ? ? 'ELECTRON MICROSCOPY' ? 12.540 10.000 192 ? r_dihedral_angle_3_deg ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_dihedral_angle_4_deg ? ? ? 'ELECTRON MICROSCOPY' ? 0.067 0.200 176 ? r_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.009 0.020 1424 ? r_gen_planes_refined ? ? ? 'ELECTRON MICROSCOPY' ? 0.005 0.020 240 ? r_gen_planes_other ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_refined ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_other ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_refined ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_other ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_refined ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_other ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_refined ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_other ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_refined ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_other ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_refined ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_other ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_other ? ? ? 'ELECTRON MICROSCOPY' ? 13.248 9.184 624 ? r_mcbond_it ? ? ? 'ELECTRON MICROSCOPY' ? 13.248 9.185 624 ? r_mcbond_other ? ? ? 'ELECTRON MICROSCOPY' ? 23.289 16.294 752 ? r_mcangle_it ? ? ? 'ELECTRON MICROSCOPY' ? 23.274 16.286 753 ? r_mcangle_other ? ? ? 'ELECTRON MICROSCOPY' ? 11.083 14.091 781 ? r_scbond_it ? ? ? 'ELECTRON MICROSCOPY' ? 11.076 14.084 782 ? r_scbond_other ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_scangle_it ? ? ? 'ELECTRON MICROSCOPY' ? 20.780 24.840 1102 ? r_scangle_other ? ? ? 'ELECTRON MICROSCOPY' ? 35.801 124.01 1274 ? r_long_range_B_refined ? ? ? 'ELECTRON MICROSCOPY' ? 35.792 123.99 1275 ? r_long_range_B_other ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_rigid_bond_restr ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_free ? ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_bonded ? ? ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_ls_shell.d_res_high 3.110 _refine_ls_shell.d_res_low 3.191 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 0 _refine_ls_shell.number_reflns_R_work 4509 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.939 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.correlation_coeff_Fo_to_Fc ? _refine_ls_shell.correlation_coeff_Fo_to_Fc_free ? _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work ? _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.000 # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2 generate ? 0.999650 -0.026456 0.000000 0.026456 0.999650 0.000000 0.000000 0.000000 1.000000 3.71000 -3.61310 -9.60000 3 generate ? 0.999913 -0.013229 0.000000 0.013229 0.999913 0.000000 0.000000 0.000000 1.000000 1.84300 -1.81880 -4.80000 4 generate ? 0.999913 0.013229 0.000000 -0.013229 0.999913 0.000000 0.000000 0.000000 1.000000 -1.81880 1.84300 4.80000 5 generate ? 0.999650 0.026456 0.000000 -0.026456 0.999650 0.000000 0.000000 0.000000 1.000000 -3.61310 3.71000 9.60000 6 generate ? 0.999213 0.039678 0.000000 -0.039678 0.999213 0.000000 0.000000 0.000000 1.000000 -5.38250 5.60050 14.40000 # _struct.entry_id 10SD _struct.title 'The cryoEM structure of T10 type2 nanofiber' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 10SD _struct_keywords.text 'nanofiber, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 2 ? U N N 2 ? V N N 2 ? W N N 2 ? X N N 2 ? Y N N 2 ? Z N N 2 ? AA N N 2 ? BA N N 2 ? CA N N 2 ? DA N N 2 ? EA N N 2 ? FA N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 10SD _struct_ref.pdbx_db_accession 10SD _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 10SD B 1 ? 11 ? 10SD 2 ? 12 ? 2 12 2 1 10SD C 1 ? 11 ? 10SD 2 ? 12 ? 2 12 3 1 10SD D 1 ? 11 ? 10SD 2 ? 12 ? 2 12 4 1 10SD E 1 ? 11 ? 10SD 2 ? 12 ? 2 12 5 1 10SD F 1 ? 11 ? 10SD 2 ? 12 ? 2 12 6 1 10SD G 1 ? 11 ? 10SD 2 ? 12 ? 2 12 7 1 10SD H 1 ? 11 ? 10SD 2 ? 12 ? 2 12 8 1 10SD I 1 ? 11 ? 10SD 2 ? 12 ? 2 12 9 1 10SD J 1 ? 11 ? 10SD 2 ? 12 ? 2 12 10 1 10SD K 1 ? 11 ? 10SD 2 ? 12 ? 2 12 11 1 10SD L 1 ? 11 ? 10SD 2 ? 12 ? 2 12 12 1 10SD M 1 ? 11 ? 10SD 2 ? 12 ? 2 12 13 1 10SD O 1 ? 11 ? 10SD 2 ? 12 ? 2 12 14 1 10SD P 1 ? 11 ? 10SD 2 ? 12 ? 2 12 15 1 10SD Q 1 ? 11 ? 10SD 2 ? 12 ? 2 12 16 1 10SD A 1 ? 11 ? 10SD 2 ? 12 ? 2 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 16-meric _pdbx_struct_assembly.oligomeric_count 16 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LYS 10 C ? ? ? 1_555 A NH2 11 N ? ? B LYS 11 B NH2 12 1_555 ? ? ? ? ? ? ? 1.256 ? ? covale2 covale one ? A LYS 10 NZ ? ? ? 1_555 Q DKA . C1 ? ? B LYS 11 B DKA 101 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale3 covale both ? B LYS 10 C ? ? ? 1_555 B NH2 11 N ? ? C LYS 11 C NH2 12 1_555 ? ? ? ? ? ? ? 1.260 ? ? covale4 covale one ? B LYS 10 NZ ? ? ? 1_555 R DKA . C1 ? ? C LYS 11 C DKA 101 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale5 covale both ? C LYS 10 C ? ? ? 1_555 C NH2 11 N ? ? D LYS 11 D NH2 12 1_555 ? ? ? ? ? ? ? 1.257 ? ? covale6 covale one ? C LYS 10 NZ ? ? ? 1_555 S DKA . C1 ? ? D LYS 11 D DKA 101 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale7 covale both ? D LYS 10 C ? ? ? 1_555 D NH2 11 N ? ? E LYS 11 E NH2 12 1_555 ? ? ? ? ? ? ? 1.275 ? ? covale8 covale one ? D LYS 10 NZ ? ? ? 1_555 T DKA . C1 ? ? E LYS 11 E DKA 101 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? E LYS 10 C ? ? ? 1_555 E NH2 11 N ? ? F LYS 11 F NH2 12 1_555 ? ? ? ? ? ? ? 1.255 ? ? covale10 covale one ? E LYS 10 NZ ? ? ? 1_555 U DKA . C1 ? ? F LYS 11 F DKA 101 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale11 covale both ? F LYS 10 C ? ? ? 1_555 F NH2 11 N ? ? G LYS 11 G NH2 12 1_555 ? ? ? ? ? ? ? 1.262 ? ? covale12 covale one ? F LYS 10 NZ ? ? ? 1_555 V DKA . C1 ? ? G LYS 11 G DKA 101 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale13 covale both ? G LYS 10 C ? ? ? 1_555 G NH2 11 N ? ? H LYS 11 H NH2 12 1_555 ? ? ? ? ? ? ? 1.258 ? ? covale14 covale one ? G LYS 10 NZ ? ? ? 1_555 W DKA . C1 ? ? H LYS 11 H DKA 101 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale15 covale both ? H LYS 10 C ? ? ? 1_555 H NH2 11 N ? ? I LYS 11 I NH2 12 1_555 ? ? ? ? ? ? ? 1.251 ? ? covale16 covale one ? H LYS 10 NZ ? ? ? 1_555 X DKA . C1 ? ? I LYS 11 I DKA 101 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale17 covale both ? I LYS 10 C ? ? ? 1_555 I NH2 11 N ? ? J LYS 11 J NH2 12 1_555 ? ? ? ? ? ? ? 1.250 ? ? covale18 covale one ? I LYS 10 NZ ? ? ? 1_555 Y DKA . C1 ? ? J LYS 11 J DKA 101 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale19 covale both ? J LYS 10 C ? ? ? 1_555 J NH2 11 N ? ? K LYS 11 K NH2 12 1_555 ? ? ? ? ? ? ? 1.259 ? ? covale20 covale one ? J LYS 10 NZ ? ? ? 1_555 Z DKA . C1 ? ? K LYS 11 K DKA 101 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale21 covale both ? K LYS 10 C ? ? ? 1_555 K NH2 11 N ? ? L LYS 11 L NH2 12 1_555 ? ? ? ? ? ? ? 1.261 ? ? covale22 covale one ? K LYS 10 NZ ? ? ? 1_555 AA DKA . C1 ? ? L LYS 11 L DKA 101 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale23 covale both ? L LYS 10 C ? ? ? 1_555 L NH2 11 N ? ? M LYS 11 M NH2 12 1_555 ? ? ? ? ? ? ? 1.246 ? ? covale24 covale one ? L LYS 10 NZ ? ? ? 1_555 BA DKA . C1 ? ? M LYS 11 M DKA 101 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale25 covale both ? M LYS 10 C ? ? ? 1_555 M NH2 11 N ? ? O LYS 11 O NH2 12 1_555 ? ? ? ? ? ? ? 1.248 ? ? covale26 covale one ? M LYS 10 NZ ? ? ? 1_555 CA DKA . C1 ? ? O LYS 11 O DKA 101 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale27 covale both ? N LYS 10 C ? ? ? 1_555 N NH2 11 N ? ? P LYS 11 P NH2 12 1_555 ? ? ? ? ? ? ? 1.240 ? ? covale28 covale one ? N LYS 10 NZ ? ? ? 1_555 DA DKA . C1 ? ? P LYS 11 P DKA 101 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale29 covale both ? O LYS 10 C ? ? ? 1_555 O NH2 11 N ? ? Q LYS 11 Q NH2 12 1_555 ? ? ? ? ? ? ? 1.248 ? ? covale30 covale one ? O LYS 10 NZ ? ? ? 1_555 EA DKA . C1 ? ? Q LYS 11 Q DKA 101 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale31 covale both ? P LYS 10 C ? ? ? 1_555 P NH2 11 N ? ? A LYS 11 A NH2 12 1_555 ? ? ? ? ? ? ? 1.238 ? ? covale32 covale one ? P LYS 10 NZ ? ? ? 1_555 FA DKA . C1 ? ? A LYS 11 A DKA 101 1_555 ? ? ? ? ? ? ? 1.337 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 A 11 ? LYS A 10 ? NH2 B 12 ? 1_555 LYS B 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 2 NH2 B 11 ? LYS B 10 ? NH2 C 12 ? 1_555 LYS C 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 3 NH2 C 11 ? LYS C 10 ? NH2 D 12 ? 1_555 LYS D 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 4 NH2 D 11 ? LYS D 10 ? NH2 E 12 ? 1_555 LYS E 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 5 NH2 E 11 ? LYS E 10 ? NH2 F 12 ? 1_555 LYS F 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 6 NH2 F 11 ? LYS F 10 ? NH2 G 12 ? 1_555 LYS G 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 7 NH2 G 11 ? LYS G 10 ? NH2 H 12 ? 1_555 LYS H 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 8 NH2 H 11 ? LYS H 10 ? NH2 I 12 ? 1_555 LYS I 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 9 NH2 I 11 ? LYS I 10 ? NH2 J 12 ? 1_555 LYS J 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 10 NH2 J 11 ? LYS J 10 ? NH2 K 12 ? 1_555 LYS K 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 11 NH2 K 11 ? LYS K 10 ? NH2 L 12 ? 1_555 LYS L 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 12 NH2 L 11 ? LYS L 10 ? NH2 M 12 ? 1_555 LYS M 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 13 NH2 M 11 ? LYS M 10 ? NH2 O 12 ? 1_555 LYS O 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 14 NH2 N 11 ? LYS N 10 ? NH2 P 12 ? 1_555 LYS P 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 15 NH2 O 11 ? LYS O 10 ? NH2 Q 12 ? 1_555 LYS Q 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 16 NH2 P 11 ? LYS P 10 ? NH2 A 12 ? 1_555 LYS A 11 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 17 DKA AA . ? LYS K 10 ? DKA L 101 ? 1_555 LYS L 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like 18 DKA BA . ? LYS L 10 ? DKA M 101 ? 1_555 LYS M 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like 19 DKA CA . ? LYS M 10 ? DKA O 101 ? 1_555 LYS O 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like 20 DKA DA . ? LYS N 10 ? DKA P 101 ? 1_555 LYS P 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like 21 DKA EA . ? LYS O 10 ? DKA Q 101 ? 1_555 LYS Q 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like 22 DKA FA . ? LYS P 10 ? DKA A 101 ? 1_555 LYS A 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like 23 DKA Q . ? LYS A 10 ? DKA B 101 ? 1_555 LYS B 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like 24 DKA R . ? LYS B 10 ? DKA C 101 ? 1_555 LYS C 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like 25 DKA S . ? LYS C 10 ? DKA D 101 ? 1_555 LYS D 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like 26 DKA T . ? LYS D 10 ? DKA E 101 ? 1_555 LYS E 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like 27 DKA U . ? LYS E 10 ? DKA F 101 ? 1_555 LYS F 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like 28 DKA V . ? LYS F 10 ? DKA G 101 ? 1_555 LYS G 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like 29 DKA W . ? LYS G 10 ? DKA H 101 ? 1_555 LYS H 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like 30 DKA X . ? LYS H 10 ? DKA I 101 ? 1_555 LYS I 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like 31 DKA Y . ? LYS I 10 ? DKA J 101 ? 1_555 LYS J 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like 32 DKA Z . ? LYS J 10 ? DKA K 101 ? 1_555 LYS K 11 ? 1_555 C1 NZ LYS 3 DKA Decanoylation Lipid/lipid-like # _pdbx_entry_details.entry_id 10SD _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR B 3 ? ? -117.03 60.59 2 1 SER D 10 ? ? -173.97 126.12 3 1 PRO F 4 ? ? -69.13 85.97 4 1 ILE G 5 ? ? -102.59 79.89 5 1 TYR H 3 ? ? -117.02 57.14 6 1 PRO K 4 ? ? -66.17 80.62 7 1 PRO Q 4 ? ? -68.08 92.08 8 1 TYR A 3 ? ? -119.07 63.32 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 10SD _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 10SD _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.11 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 37 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source SYNTHETIC _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'T10 type2' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 10SD _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1200 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 10SD _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 10SD _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DKA C1 C N N 1 DKA O1 O N N 2 DKA C2 C N N 3 DKA C3 C N N 4 DKA C4 C N N 5 DKA C5 C N N 6 DKA C6 C N N 7 DKA C7 C N N 8 DKA C8 C N N 9 DKA C9 C N N 10 DKA C10 C N N 11 DKA O2 O N N 12 DKA H21 H N N 13 DKA H22 H N N 14 DKA H31 H N N 15 DKA H32 H N N 16 DKA H41 H N N 17 DKA H42 H N N 18 DKA H51 H N N 19 DKA H52 H N N 20 DKA H61 H N N 21 DKA H62 H N N 22 DKA H71 H N N 23 DKA H72 H N N 24 DKA H81 H N N 25 DKA H82 H N N 26 DKA H91 H N N 27 DKA H92 H N N 28 DKA H101 H N N 29 DKA H102 H N N 30 DKA H103 H N N 31 DKA HO2 H N N 32 GLY N N N N 33 GLY CA C N N 34 GLY C C N N 35 GLY O O N N 36 GLY OXT O N N 37 GLY H H N N 38 GLY H2 H N N 39 GLY HA2 H N N 40 GLY HA3 H N N 41 GLY HXT H N N 42 HIS N N N N 43 HIS CA C N S 44 HIS C C N N 45 HIS O O N N 46 HIS CB C N N 47 HIS CG C Y N 48 HIS ND1 N Y N 49 HIS CD2 C Y N 50 HIS CE1 C Y N 51 HIS NE2 N Y N 52 HIS OXT O N N 53 HIS H H N N 54 HIS H2 H N N 55 HIS HA H N N 56 HIS HB2 H N N 57 HIS HB3 H N N 58 HIS HD1 H N N 59 HIS HD2 H N N 60 HIS HE1 H N N 61 HIS HE2 H N N 62 HIS HXT H N N 63 ILE N N N N 64 ILE CA C N S 65 ILE C C N N 66 ILE O O N N 67 ILE CB C N S 68 ILE CG1 C N N 69 ILE CG2 C N N 70 ILE CD1 C N N 71 ILE OXT O N N 72 ILE H H N N 73 ILE H2 H N N 74 ILE HA H N N 75 ILE HB H N N 76 ILE HG12 H N N 77 ILE HG13 H N N 78 ILE HG21 H N N 79 ILE HG22 H N N 80 ILE HG23 H N N 81 ILE HD11 H N N 82 ILE HD12 H N N 83 ILE HD13 H N N 84 ILE HXT H N N 85 LYS N N N N 86 LYS CA C N S 87 LYS C C N N 88 LYS O O N N 89 LYS CB C N N 90 LYS CG C N N 91 LYS CD C N N 92 LYS CE C N N 93 LYS NZ N N N 94 LYS OXT O N N 95 LYS H H N N 96 LYS H2 H N N 97 LYS HA H N N 98 LYS HB2 H N N 99 LYS HB3 H N N 100 LYS HG2 H N N 101 LYS HG3 H N N 102 LYS HD2 H N N 103 LYS HD3 H N N 104 LYS HE2 H N N 105 LYS HE3 H N N 106 LYS HZ1 H N N 107 LYS HZ2 H N N 108 LYS HZ3 H N N 109 LYS HXT H N N 110 NH2 N N N N 111 NH2 HN1 H N N 112 NH2 HN2 H N N 113 PRO N N N N 114 PRO CA C N S 115 PRO C C N N 116 PRO O O N N 117 PRO CB C N N 118 PRO CG C N N 119 PRO CD C N N 120 PRO OXT O N N 121 PRO H H N N 122 PRO HA H N N 123 PRO HB2 H N N 124 PRO HB3 H N N 125 PRO HG2 H N N 126 PRO HG3 H N N 127 PRO HD2 H N N 128 PRO HD3 H N N 129 PRO HXT H N N 130 SER N N N N 131 SER CA C N S 132 SER C C N N 133 SER O O N N 134 SER CB C N N 135 SER OG O N N 136 SER OXT O N N 137 SER H H N N 138 SER H2 H N N 139 SER HA H N N 140 SER HB2 H N N 141 SER HB3 H N N 142 SER HG H N N 143 SER HXT H N N 144 TYR N N N N 145 TYR CA C N S 146 TYR C C N N 147 TYR O O N N 148 TYR CB C N N 149 TYR CG C Y N 150 TYR CD1 C Y N 151 TYR CD2 C Y N 152 TYR CE1 C Y N 153 TYR CE2 C Y N 154 TYR CZ C Y N 155 TYR OH O N N 156 TYR OXT O N N 157 TYR H H N N 158 TYR H2 H N N 159 TYR HA H N N 160 TYR HB2 H N N 161 TYR HB3 H N N 162 TYR HD1 H N N 163 TYR HD2 H N N 164 TYR HE1 H N N 165 TYR HE2 H N N 166 TYR HH H N N 167 TYR HXT H N N 168 VAL N N N N 169 VAL CA C N S 170 VAL C C N N 171 VAL O O N N 172 VAL CB C N N 173 VAL CG1 C N N 174 VAL CG2 C N N 175 VAL OXT O N N 176 VAL H H N N 177 VAL H2 H N N 178 VAL HA H N N 179 VAL HB H N N 180 VAL HG11 H N N 181 VAL HG12 H N N 182 VAL HG13 H N N 183 VAL HG21 H N N 184 VAL HG22 H N N 185 VAL HG23 H N N 186 VAL HXT H N N 187 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DKA C1 O1 doub N N 1 DKA C1 C2 sing N N 2 DKA C1 O2 sing N N 3 DKA C2 C3 sing N N 4 DKA C2 H21 sing N N 5 DKA C2 H22 sing N N 6 DKA C3 C4 sing N N 7 DKA C3 H31 sing N N 8 DKA C3 H32 sing N N 9 DKA C4 C5 sing N N 10 DKA C4 H41 sing N N 11 DKA C4 H42 sing N N 12 DKA C5 C6 sing N N 13 DKA C5 H51 sing N N 14 DKA C5 H52 sing N N 15 DKA C6 C7 sing N N 16 DKA C6 H61 sing N N 17 DKA C6 H62 sing N N 18 DKA C7 C8 sing N N 19 DKA C7 H71 sing N N 20 DKA C7 H72 sing N N 21 DKA C8 C9 sing N N 22 DKA C8 H81 sing N N 23 DKA C8 H82 sing N N 24 DKA C9 C10 sing N N 25 DKA C9 H91 sing N N 26 DKA C9 H92 sing N N 27 DKA C10 H101 sing N N 28 DKA C10 H102 sing N N 29 DKA C10 H103 sing N N 30 DKA O2 HO2 sing N N 31 GLY N CA sing N N 32 GLY N H sing N N 33 GLY N H2 sing N N 34 GLY CA C sing N N 35 GLY CA HA2 sing N N 36 GLY CA HA3 sing N N 37 GLY C O doub N N 38 GLY C OXT sing N N 39 GLY OXT HXT sing N N 40 HIS N CA sing N N 41 HIS N H sing N N 42 HIS N H2 sing N N 43 HIS CA C sing N N 44 HIS CA CB sing N N 45 HIS CA HA sing N N 46 HIS C O doub N N 47 HIS C OXT sing N N 48 HIS CB CG sing N N 49 HIS CB HB2 sing N N 50 HIS CB HB3 sing N N 51 HIS CG ND1 sing Y N 52 HIS CG CD2 doub Y N 53 HIS ND1 CE1 doub Y N 54 HIS ND1 HD1 sing N N 55 HIS CD2 NE2 sing Y N 56 HIS CD2 HD2 sing N N 57 HIS CE1 NE2 sing Y N 58 HIS CE1 HE1 sing N N 59 HIS NE2 HE2 sing N N 60 HIS OXT HXT sing N N 61 ILE N CA sing N N 62 ILE N H sing N N 63 ILE N H2 sing N N 64 ILE CA C sing N N 65 ILE CA CB sing N N 66 ILE CA HA sing N N 67 ILE C O doub N N 68 ILE C OXT sing N N 69 ILE CB CG1 sing N N 70 ILE CB CG2 sing N N 71 ILE CB HB sing N N 72 ILE CG1 CD1 sing N N 73 ILE CG1 HG12 sing N N 74 ILE CG1 HG13 sing N N 75 ILE CG2 HG21 sing N N 76 ILE CG2 HG22 sing N N 77 ILE CG2 HG23 sing N N 78 ILE CD1 HD11 sing N N 79 ILE CD1 HD12 sing N N 80 ILE CD1 HD13 sing N N 81 ILE OXT HXT sing N N 82 LYS N CA sing N N 83 LYS N H sing N N 84 LYS N H2 sing N N 85 LYS CA C sing N N 86 LYS CA CB sing N N 87 LYS CA HA sing N N 88 LYS C O doub N N 89 LYS C OXT sing N N 90 LYS CB CG sing N N 91 LYS CB HB2 sing N N 92 LYS CB HB3 sing N N 93 LYS CG CD sing N N 94 LYS CG HG2 sing N N 95 LYS CG HG3 sing N N 96 LYS CD CE sing N N 97 LYS CD HD2 sing N N 98 LYS CD HD3 sing N N 99 LYS CE NZ sing N N 100 LYS CE HE2 sing N N 101 LYS CE HE3 sing N N 102 LYS NZ HZ1 sing N N 103 LYS NZ HZ2 sing N N 104 LYS NZ HZ3 sing N N 105 LYS OXT HXT sing N N 106 NH2 N HN1 sing N N 107 NH2 N HN2 sing N N 108 PRO N CA sing N N 109 PRO N CD sing N N 110 PRO N H sing N N 111 PRO CA C sing N N 112 PRO CA CB sing N N 113 PRO CA HA sing N N 114 PRO C O doub N N 115 PRO C OXT sing N N 116 PRO CB CG sing N N 117 PRO CB HB2 sing N N 118 PRO CB HB3 sing N N 119 PRO CG CD sing N N 120 PRO CG HG2 sing N N 121 PRO CG HG3 sing N N 122 PRO CD HD2 sing N N 123 PRO CD HD3 sing N N 124 PRO OXT HXT sing N N 125 SER N CA sing N N 126 SER N H sing N N 127 SER N H2 sing N N 128 SER CA C sing N N 129 SER CA CB sing N N 130 SER CA HA sing N N 131 SER C O doub N N 132 SER C OXT sing N N 133 SER CB OG sing N N 134 SER CB HB2 sing N N 135 SER CB HB3 sing N N 136 SER OG HG sing N N 137 SER OXT HXT sing N N 138 TYR N CA sing N N 139 TYR N H sing N N 140 TYR N H2 sing N N 141 TYR CA C sing N N 142 TYR CA CB sing N N 143 TYR CA HA sing N N 144 TYR C O doub N N 145 TYR C OXT sing N N 146 TYR CB CG sing N N 147 TYR CB HB2 sing N N 148 TYR CB HB3 sing N N 149 TYR CG CD1 doub Y N 150 TYR CG CD2 sing Y N 151 TYR CD1 CE1 sing Y N 152 TYR CD1 HD1 sing N N 153 TYR CD2 CE2 doub Y N 154 TYR CD2 HD2 sing N N 155 TYR CE1 CZ doub Y N 156 TYR CE1 HE1 sing N N 157 TYR CE2 CZ sing Y N 158 TYR CE2 HE2 sing N N 159 TYR CZ OH sing N N 160 TYR OH HH sing N N 161 TYR OXT HXT sing N N 162 VAL N CA sing N N 163 VAL N H sing N N 164 VAL N H2 sing N N 165 VAL CA C sing N N 166 VAL CA CB sing N N 167 VAL CA HA sing N N 168 VAL C O doub N N 169 VAL C OXT sing N N 170 VAL CB CG1 sing N N 171 VAL CB CG2 sing N N 172 VAL CB HB sing N N 173 VAL CG1 HG11 sing N N 174 VAL CG1 HG12 sing N N 175 VAL CG1 HG13 sing N N 176 VAL CG2 HG21 sing N N 177 VAL CG2 HG22 sing N N 178 VAL CG2 HG23 sing N N 179 VAL OXT HXT sing N N 180 # _em_admin.current_status REL _em_admin.deposition_date 2026-02-05 _em_admin.deposition_site RCSB _em_admin.entry_id 10SD _em_admin.last_update 2026-06-17 _em_admin.map_release_date 2026-06-17 _em_admin.title 'The cryoEM structure of T10 type2 nanofiber' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING ONLY' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 1.915 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -0.758 _em_helical_entity.axial_rise_per_subunit 4.8 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? RELION ? ? 'MODEL REFINEMENT' ? 2 ? ? ? REFMAC 5.8.0430 ? 'IMAGE ACQUISITION' ? 3 1 1 1 ? ? ? MASKING ? 4 1 1 1 ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 6 1 1 1 ? ? ? 'DIFFRACTION INDEXING' ? 7 1 1 1 ? ? ? 'MODEL FITTING' ? 8 1 1 1 ? ? ? OTHER ? 9 1 1 1 ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? Servalcat ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 10SD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ #