HEADER PROTEIN FIBRIL 05-FEB-26 10SD TITLE THE CRYOEM STRUCTURE OF T10 TYPE2 NANOFIBER COMPND MOL_ID: 1; COMPND 2 MOLECULE: T10 TYPE 2 NANOFIBER; COMPND 3 CHAIN: B, C, D, E, F, G, H, I, J, K, L, M, O, P, Q, A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: HYPIVIGGSK(NH2) SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS NANOFIBER, PROTEIN FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR H.ZHANG,Y.YANG REVDAT 1 17-JUN-26 10SD 0 JRNL AUTH J.M.GODBE,H.ZHANG,A.K.SHARMA,K.N.ERNST,Z.JING,M.R.DYER, JRNL AUTH 2 J.L.PRIOR,E.TEUBNER,B.MANION,R.TANG,Y.YANG,M.SHOKEEN JRNL TITL TAILORING AVIDITY THROUGH MORPHOLOGY: STRUCTURE-AVIDITY JRNL TITL 2 RELATIONSHIP IN CD38-BINDING NANOFIBER RADIOTRACERS. JRNL REF ACS APPL BIO MATER V. 9 4242 2026 JRNL REFN ISSN 2576-6422 JRNL PMID 42011845 JRNL DOI 10.1021/ACSABM.6C00348 REMARK 2 REMARK 2 RESOLUTION. 3.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, REFMAC, SERVALCAT REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.110 REMARK 3 NUMBER OF PARTICLES : 37 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 10SD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-26. REMARK 100 THE DEPOSITION ID IS D_1000304887. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : T10 TYPE2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 16-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 16-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D, E, F, G, H, I, J, K, REMARK 350 AND CHAINS: L, M, O, P, Q, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 3 60.59 -117.03 REMARK 500 SER D 10 126.12 -173.97 REMARK 500 PRO F 4 85.97 -69.13 REMARK 500 ILE G 5 79.89 -102.59 REMARK 500 TYR H 3 57.14 -117.02 REMARK 500 PRO K 4 80.62 -66.17 REMARK 500 PRO Q 4 92.08 -68.08 REMARK 500 TYR A 3 63.32 -119.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DKA F 101 REMARK 610 DKA G 101 REMARK 610 DKA H 101 REMARK 610 DKA I 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-75431 RELATED DB: EMDB REMARK 900 THE CRYOEM STRUCTURE OF T10 TYPE2 NANOFIBER DBREF 10SD B 2 12 PDB 10SD 10SD 2 12 DBREF 10SD C 2 12 PDB 10SD 10SD 2 12 DBREF 10SD D 2 12 PDB 10SD 10SD 2 12 DBREF 10SD E 2 12 PDB 10SD 10SD 2 12 DBREF 10SD F 2 12 PDB 10SD 10SD 2 12 DBREF 10SD G 2 12 PDB 10SD 10SD 2 12 DBREF 10SD H 2 12 PDB 10SD 10SD 2 12 DBREF 10SD I 2 12 PDB 10SD 10SD 2 12 DBREF 10SD J 2 12 PDB 10SD 10SD 2 12 DBREF 10SD K 2 12 PDB 10SD 10SD 2 12 DBREF 10SD L 2 12 PDB 10SD 10SD 2 12 DBREF 10SD M 2 12 PDB 10SD 10SD 2 12 DBREF 10SD O 2 12 PDB 10SD 10SD 2 12 DBREF 10SD P 2 12 PDB 10SD 10SD 2 12 DBREF 10SD Q 2 12 PDB 10SD 10SD 2 12 DBREF 10SD A 2 12 PDB 10SD 10SD 2 12 SEQRES 1 B 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 SEQRES 1 C 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 SEQRES 1 D 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 SEQRES 1 E 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 SEQRES 1 F 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 SEQRES 1 G 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 SEQRES 1 H 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 SEQRES 1 I 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 SEQRES 1 J 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 SEQRES 1 K 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 SEQRES 1 L 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 SEQRES 1 M 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 SEQRES 1 O 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 SEQRES 1 P 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 SEQRES 1 Q 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 SEQRES 1 A 11 HIS TYR PRO ILE VAL ILE GLY GLY SER LYS NH2 HET NH2 B 12 1 HET NH2 C 12 1 HET NH2 D 12 1 HET NH2 E 12 1 HET NH2 F 12 1 HET NH2 G 12 1 HET NH2 H 12 1 HET NH2 I 12 1 HET NH2 J 12 1 HET NH2 K 12 1 HET NH2 L 12 1 HET NH2 M 12 1 HET NH2 O 12 1 HET NH2 P 12 1 HET NH2 Q 12 1 HET NH2 A 12 1 HET DKA B 101 11 HET DKA C 101 11 HET DKA D 101 11 HET DKA E 101 11 HET DKA F 101 5 HET DKA G 101 10 HET DKA H 101 3 HET DKA I 101 7 HET DKA J 101 11 HET DKA K 101 11 HET DKA L 101 11 HET DKA M 101 11 HET DKA O 101 11 HET DKA P 101 11 HET DKA Q 101 11 HET DKA A 101 11 HETNAM NH2 AMINO GROUP HETNAM DKA DECANOIC ACID FORMUL 1 NH2 16(H2 N) FORMUL 17 DKA 16(C10 H20 O2) LINK C LYS B 11 N NH2 B 12 1555 1555 1.26 LINK NZ LYS B 11 C1 DKA B 101 1555 1555 1.34 LINK C LYS C 11 N NH2 C 12 1555 1555 1.26 LINK NZ LYS C 11 C1 DKA C 101 1555 1555 1.34 LINK C LYS D 11 N NH2 D 12 1555 1555 1.26 LINK NZ LYS D 11 C1 DKA D 101 1555 1555 1.34 LINK C LYS E 11 N NH2 E 12 1555 1555 1.28 LINK NZ LYS E 11 C1 DKA E 101 1555 1555 1.33 LINK C LYS F 11 N NH2 F 12 1555 1555 1.26 LINK NZ LYS F 11 C1 DKA F 101 1555 1555 1.34 LINK C LYS G 11 N NH2 G 12 1555 1555 1.26 LINK NZ LYS G 11 C1 DKA G 101 1555 1555 1.33 LINK C LYS H 11 N NH2 H 12 1555 1555 1.26 LINK NZ LYS H 11 C1 DKA H 101 1555 1555 1.34 LINK C LYS I 11 N NH2 I 12 1555 1555 1.25 LINK NZ LYS I 11 C1 DKA I 101 1555 1555 1.34 LINK C LYS J 11 N NH2 J 12 1555 1555 1.25 LINK NZ LYS J 11 C1 DKA J 101 1555 1555 1.33 LINK C LYS K 11 N NH2 K 12 1555 1555 1.26 LINK NZ LYS K 11 C1 DKA K 101 1555 1555 1.34 LINK C LYS L 11 N NH2 L 12 1555 1555 1.26 LINK NZ LYS L 11 C1 DKA L 101 1555 1555 1.34 LINK C LYS M 11 N NH2 M 12 1555 1555 1.25 LINK NZ LYS M 11 C1 DKA M 101 1555 1555 1.34 LINK C LYS O 11 N NH2 O 12 1555 1555 1.25 LINK NZ LYS O 11 C1 DKA O 101 1555 1555 1.35 LINK C LYS P 11 N NH2 P 12 1555 1555 1.24 LINK NZ LYS P 11 C1 DKA P 101 1555 1555 1.35 LINK C LYS Q 11 N NH2 Q 12 1555 1555 1.25 LINK NZ LYS Q 11 C1 DKA Q 101 1555 1555 1.33 LINK C LYS A 11 N NH2 A 12 1555 1555 1.24 LINK NZ LYS A 11 C1 DKA A 101 1555 1555 1.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.999650 -0.026456 0.000000 3.71000 MTRIX2 2 0.026456 0.999650 0.000000 -3.61310 MTRIX3 2 0.000000 0.000000 1.000000 -9.60000 MTRIX1 3 0.999913 -0.013229 0.000000 1.84300 MTRIX2 3 0.013229 0.999913 0.000000 -1.81880 MTRIX3 3 0.000000 0.000000 1.000000 -4.80000 MTRIX1 4 0.999913 0.013229 0.000000 -1.81880 MTRIX2 4 -0.013229 0.999913 0.000000 1.84300 MTRIX3 4 0.000000 0.000000 1.000000 4.80000 MTRIX1 5 0.999650 0.026456 0.000000 -3.61310 MTRIX2 5 -0.026456 0.999650 0.000000 3.71000 MTRIX3 5 0.000000 0.000000 1.000000 9.60000 MTRIX1 6 0.999213 0.039678 0.000000 -5.38250 MTRIX2 6 -0.039678 0.999213 0.000000 5.60050 MTRIX3 6 0.000000 0.000000 1.000000 14.40000 CONECT 69 76 CONECT 75 1233 CONECT 76 69 CONECT 146 153 CONECT 152 1244 CONECT 153 146 CONECT 223 230 CONECT 229 1255 CONECT 230 223 CONECT 300 307 CONECT 306 1266 CONECT 307 300 CONECT 377 384 CONECT 383 1277 CONECT 384 377 CONECT 454 461 CONECT 460 1282 CONECT 461 454 CONECT 531 538 CONECT 537 1292 CONECT 538 531 CONECT 608 615 CONECT 614 1295 CONECT 615 608 CONECT 685 692 CONECT 691 1302 CONECT 692 685 CONECT 762 769 CONECT 768 1313 CONECT 769 762 CONECT 839 846 CONECT 845 1324 CONECT 846 839 CONECT 916 923 CONECT 922 1335 CONECT 923 916 CONECT 993 1000 CONECT 999 1346 CONECT 1000 993 CONECT 1070 1077 CONECT 1076 1357 CONECT 1077 1070 CONECT 1147 1154 CONECT 1153 1368 CONECT 1154 1147 CONECT 1224 1231 CONECT 1230 1379 CONECT 1231 1224 CONECT 1233 75 1234 1235 CONECT 1234 1233 CONECT 1235 1233 1236 CONECT 1236 1235 1237 CONECT 1237 1236 1238 CONECT 1238 1237 1239 CONECT 1239 1238 1240 CONECT 1240 1239 1241 CONECT 1241 1240 1242 CONECT 1242 1241 1243 CONECT 1243 1242 CONECT 1244 152 1245 1246 CONECT 1245 1244 CONECT 1246 1244 1247 CONECT 1247 1246 1248 CONECT 1248 1247 1249 CONECT 1249 1248 1250 CONECT 1250 1249 1251 CONECT 1251 1250 1252 CONECT 1252 1251 1253 CONECT 1253 1252 1254 CONECT 1254 1253 CONECT 1255 229 1256 1257 CONECT 1256 1255 CONECT 1257 1255 1258 CONECT 1258 1257 1259 CONECT 1259 1258 1260 CONECT 1260 1259 1261 CONECT 1261 1260 1262 CONECT 1262 1261 1263 CONECT 1263 1262 1264 CONECT 1264 1263 1265 CONECT 1265 1264 CONECT 1266 306 1267 1268 CONECT 1267 1266 CONECT 1268 1266 1269 CONECT 1269 1268 1270 CONECT 1270 1269 1271 CONECT 1271 1270 1272 CONECT 1272 1271 1273 CONECT 1273 1272 1274 CONECT 1274 1273 1275 CONECT 1275 1274 1276 CONECT 1276 1275 CONECT 1277 383 1278 1279 CONECT 1278 1277 CONECT 1279 1277 1280 CONECT 1280 1279 1281 CONECT 1281 1280 CONECT 1282 460 1283 1284 CONECT 1283 1282 CONECT 1284 1282 1285 CONECT 1285 1284 1286 CONECT 1286 1285 1287 CONECT 1287 1286 1288 CONECT 1288 1287 1289 CONECT 1289 1288 1290 CONECT 1290 1289 1291 CONECT 1291 1290 CONECT 1292 537 1293 1294 CONECT 1293 1292 CONECT 1294 1292 CONECT 1295 614 1296 1297 CONECT 1296 1295 CONECT 1297 1295 1298 CONECT 1298 1297 1299 CONECT 1299 1298 1300 CONECT 1300 1299 1301 CONECT 1301 1300 CONECT 1302 691 1303 1304 CONECT 1303 1302 CONECT 1304 1302 1305 CONECT 1305 1304 1306 CONECT 1306 1305 1307 CONECT 1307 1306 1308 CONECT 1308 1307 1309 CONECT 1309 1308 1310 CONECT 1310 1309 1311 CONECT 1311 1310 1312 CONECT 1312 1311 CONECT 1313 768 1314 1315 CONECT 1314 1313 CONECT 1315 1313 1316 CONECT 1316 1315 1317 CONECT 1317 1316 1318 CONECT 1318 1317 1319 CONECT 1319 1318 1320 CONECT 1320 1319 1321 CONECT 1321 1320 1322 CONECT 1322 1321 1323 CONECT 1323 1322 CONECT 1324 845 1325 1326 CONECT 1325 1324 CONECT 1326 1324 1327 CONECT 1327 1326 1328 CONECT 1328 1327 1329 CONECT 1329 1328 1330 CONECT 1330 1329 1331 CONECT 1331 1330 1332 CONECT 1332 1331 1333 CONECT 1333 1332 1334 CONECT 1334 1333 CONECT 1335 922 1336 1337 CONECT 1336 1335 CONECT 1337 1335 1338 CONECT 1338 1337 1339 CONECT 1339 1338 1340 CONECT 1340 1339 1341 CONECT 1341 1340 1342 CONECT 1342 1341 1343 CONECT 1343 1342 1344 CONECT 1344 1343 1345 CONECT 1345 1344 CONECT 1346 999 1347 1348 CONECT 1347 1346 CONECT 1348 1346 1349 CONECT 1349 1348 1350 CONECT 1350 1349 1351 CONECT 1351 1350 1352 CONECT 1352 1351 1353 CONECT 1353 1352 1354 CONECT 1354 1353 1355 CONECT 1355 1354 1356 CONECT 1356 1355 CONECT 1357 1076 1358 1359 CONECT 1358 1357 CONECT 1359 1357 1360 CONECT 1360 1359 1361 CONECT 1361 1360 1362 CONECT 1362 1361 1363 CONECT 1363 1362 1364 CONECT 1364 1363 1365 CONECT 1365 1364 1366 CONECT 1366 1365 1367 CONECT 1367 1366 CONECT 1368 1153 1369 1370 CONECT 1369 1368 CONECT 1370 1368 1371 CONECT 1371 1370 1372 CONECT 1372 1371 1373 CONECT 1373 1372 1374 CONECT 1374 1373 1375 CONECT 1375 1374 1376 CONECT 1376 1375 1377 CONECT 1377 1376 1378 CONECT 1378 1377 CONECT 1379 1230 1380 1381 CONECT 1380 1379 CONECT 1381 1379 1382 CONECT 1382 1381 1383 CONECT 1383 1382 1384 CONECT 1384 1383 1385 CONECT 1385 1384 1386 CONECT 1386 1385 1387 CONECT 1387 1386 1388 CONECT 1388 1387 1389 CONECT 1389 1388 MASTER 134 0 32 0 0 0 0 24 1373 16 205 16 END