HEADER VIRAL PROTEIN 20-JAN-26 10HO TITLE CRYSTAL STRUCTURE OF ALKALINE NUCLEASE FROM HERPES SIMPLEX VIRUS-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYRIBONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ALPHAHERPESVIRUS 1; SOURCE 3 ORGANISM_COMMON: HERPES SIMPLEX VIRUS TYPE 1; SOURCE 4 ORGANISM_TAXID: 10298; SOURCE 5 GENE: UL12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HERPES SIMPLEX VIRUS 1, ALKALINE NUCLEASE, UL12, UL12.5, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.SHARMA,C.RANI,D.L.WRIGHT,S.K.WELLER REVDAT 1 09-SEP-26 10HO 0 JRNL AUTH N.SHARMA,X.XIE,R.SZCZEPANIAK,C.RANI,S.K.KHOSRO,J.KRUCINSKA, JRNL AUTH 2 X.CHEN,D.DO,L.WRIGHT,D.WRIGHT,S.WELLER JRNL TITL VIRAL NUCLEASE INHIBITORS: SMALL MOLECULE DISRUPTORS OF THE JRNL TITL 2 UL12 ALKALINE NUCLEASE DISPLAY BROAD ANTI-HERPES VIRUS JRNL TITL 3 ACTIVITY. JRNL REF PLOS PATHOG. V. 22 14531 2026 JRNL REFN ESSN 1553-7374 JRNL PMID 42607086 JRNL DOI 10.1371/JOURNAL.PPAT.1014531 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.875 REMARK 3 FREE R VALUE TEST SET COUNT : 1104 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1546 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3317 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.23300 REMARK 3 B22 (A**2) : -3.00000 REMARK 3 B33 (A**2) : -4.23300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.296 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.236 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.213 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.024 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3422 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3226 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4655 ; 2.247 ; 1.828 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7411 ; 0.754 ; 1.746 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 7.319 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 36 ;10.319 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 525 ;15.509 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 510 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4097 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 821 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 706 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 24 ; 0.151 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1636 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 81 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1691 ; 7.298 ; 5.812 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1692 ; 7.299 ; 5.812 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2102 ;10.024 ;10.396 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2103 ;10.021 ;10.401 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1731 ; 8.945 ; 6.552 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1728 ; 8.840 ; 6.539 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2553 ;12.458 ;11.632 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2548 ;12.399 ;11.611 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 10HO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1000300795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6-5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92010 REMARK 200 MONOCHROMATOR : SI(111) DCM REMARK 200 OPTICS : KB BIMORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : FAST_DP REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22700 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 29.642 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.31600 REMARK 200 R SYM FOR SHELL (I) : 0.31600 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM ACETATE, PEG REMARK 280 4000, GLYCEROL AND DMSO, PH 5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.49850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.78600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.11650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.78600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.49850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.11650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -33 REMARK 465 GLY A -32 REMARK 465 SER A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 THR A -21 REMARK 465 SER A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 GLY A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 ALA A -9 REMARK 465 ARG A 74 REMARK 465 GLY A 75 REMARK 465 PRO A 76 REMARK 465 PRO A 77 REMARK 465 ALA A 78 REMARK 465 ALA A 79 REMARK 465 ALA A 80 REMARK 465 ASP A 81 REMARK 465 ALA A 82 REMARK 465 LEU A 138 REMARK 465 ARG A 139 REMARK 465 PRO A 140 REMARK 465 ASP A 141 REMARK 465 VAL A 142 REMARK 465 GLN A 143 REMARK 465 GLY A 167 REMARK 465 ARG A 168 REMARK 465 ALA A 169 REMARK 465 ASP A 170 REMARK 465 ASP A 171 REMARK 465 GLY A 172 REMARK 465 GLY A 173 REMARK 465 GLU A 174 REMARK 465 ALA A 175 REMARK 465 GLY A 176 REMARK 465 ALA A 177 REMARK 465 ASP A 178 REMARK 465 THR A 179 REMARK 465 ARG A 180 REMARK 465 ARG A 181 REMARK 465 PHE A 182 REMARK 465 ILE A 183 REMARK 465 PHE A 184 REMARK 465 HIS A 185 REMARK 465 GLU A 186 REMARK 465 PRO A 187 REMARK 465 GLY A 188 REMARK 465 ASP A 189 REMARK 465 LEU A 190 REMARK 465 ALA A 191 REMARK 465 GLU A 192 REMARK 465 GLU A 193 REMARK 465 ASN A 194 REMARK 465 VAL A 195 REMARK 465 ALA A 309 REMARK 465 HIS A 310 REMARK 465 ALA A 311 REMARK 465 SER A 312 REMARK 465 GLY A 313 REMARK 465 GLU A 314 REMARK 465 LYS A 315 REMARK 465 ARG A 316 REMARK 465 GLY A 419 REMARK 465 ALA A 420 REMARK 465 GLY A 421 REMARK 465 ALA A 422 REMARK 465 LEU A 423 REMARK 465 GLY A 424 REMARK 465 ALA A 425 REMARK 465 ALA A 426 REMARK 465 GLY A 427 REMARK 465 PRO A 428 REMARK 465 SER A 478 REMARK 465 PRO A 479 REMARK 465 GLY A 480 REMARK 465 PRO A 481 REMARK 465 GLY A 482 REMARK 465 PRO A 483 REMARK 465 ALA A 484 REMARK 465 ALA A 485 REMARK 465 ALA A 486 REMARK 465 GLU A 487 REMARK 465 THR A 488 REMARK 465 THR A 489 REMARK 465 SER A 490 REMARK 465 SER A 491 REMARK 465 SER A 492 REMARK 465 PRO A 493 REMARK 465 THR A 494 REMARK 465 THR A 495 REMARK 465 GLY A 496 REMARK 465 ARG A 497 REMARK 465 SER A 498 REMARK 465 SER A 499 REMARK 465 ARG A 500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 371 H ASN A 373 1.34 REMARK 500 H GLN A 302 O HOH A 701 1.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 62 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 MET A 148 CG - SD - CE ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG A 158 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 317 CG - CD - NE ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 317 CD - NE - CZ ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG A 323 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 99 -124.61 41.73 REMARK 500 GLN A 130 37.00 -95.07 REMARK 500 ALA A 146 -19.64 71.05 REMARK 500 CYS A 165 -74.32 -133.47 REMARK 500 ASP A 214 -73.06 -98.84 REMARK 500 ARG A 267 44.99 71.39 REMARK 500 LYS A 430 139.74 -176.01 REMARK 500 ILE A 441 -62.20 -122.22 REMARK 500 ALA A 475 68.16 -69.92 REMARK 500 SER A 476 166.04 172.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 25 0.12 SIDE CHAIN REMARK 500 ARG A 158 0.16 SIDE CHAIN REMARK 500 ARG A 267 0.12 SIDE CHAIN REMARK 500 ARG A 317 0.10 SIDE CHAIN REMARK 500 ARG A 362 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF1 10HO A 1 500 UNP A0A140GKD1_HHV1 DBREF2 10HO A A0A140GKD1 127 626 SEQADV 10HO MET A -33 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO GLY A -32 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO SER A -31 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO SER A -30 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO HIS A -29 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO HIS A -28 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO HIS A -27 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO HIS A -26 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO HIS A -25 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO HIS A -24 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO SER A -23 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO SER A -22 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO THR A -21 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO SER A -20 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO GLY A -19 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO SER A -18 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO GLY A -17 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO HIS A -16 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO HIS A -15 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO HIS A -14 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO HIS A -13 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO HIS A -12 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO HIS A -11 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO SER A -10 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO ALA A -9 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO GLY A -8 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO GLU A -7 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO ASN A -6 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO LEU A -5 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO TYR A -4 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO PHE A -3 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO GLN A -2 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO GLY A -1 UNP A0A140GKD EXPRESSION TAG SEQADV 10HO ALA A 0 UNP A0A140GKD EXPRESSION TAG SEQRES 1 A 534 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER THR SEQRES 2 A 534 SER GLY SER GLY HIS HIS HIS HIS HIS HIS SER ALA GLY SEQRES 3 A 534 GLU ASN LEU TYR PHE GLN GLY ALA MET TRP SER ALA SER SEQRES 4 A 534 VAL ILE PRO ASN ALA LEU PRO SER HIS ILE LEU ALA GLU SEQRES 5 A 534 THR PHE GLU ARG HIS LEU ARG GLY LEU LEU ARG GLY VAL SEQRES 6 A 534 ARG ALA PRO LEU ALA ILE GLY PRO LEU TRP ALA ARG LEU SEQRES 7 A 534 ASP TYR LEU CYS SER LEU ALA VAL VAL LEU GLU GLU ALA SEQRES 8 A 534 GLY MET VAL ASP ARG GLY LEU GLY ARG HIS LEU TRP ARG SEQRES 9 A 534 LEU THR ARG ARG GLY PRO PRO ALA ALA ALA ASP ALA VAL SEQRES 10 A 534 ALA PRO ARG PRO LEU MET GLY PHE TYR GLU ALA ALA THR SEQRES 11 A 534 GLN ASN GLN ALA ASP CYS GLN LEU TRP ALA LEU LEU ARG SEQRES 12 A 534 ARG GLY LEU THR THR ALA SER THR LEU ARG TRP GLY PRO SEQRES 13 A 534 GLN GLY PRO CYS PHE SER PRO GLN TRP LEU LYS HIS ASN SEQRES 14 A 534 ALA SER LEU ARG PRO ASP VAL GLN SER SER ALA VAL MET SEQRES 15 A 534 PHE GLY ARG VAL ASN GLU PRO THR ALA ARG SER LEU LEU SEQRES 16 A 534 PHE ARG TYR CYS VAL GLY ARG ALA ASP ASP GLY GLY GLU SEQRES 17 A 534 ALA GLY ALA ASP THR ARG ARG PHE ILE PHE HIS GLU PRO SEQRES 18 A 534 GLY ASP LEU ALA GLU GLU ASN VAL HIS THR CYS GLY VAL SEQRES 19 A 534 LEU MET ASP GLY HIS THR GLY MET VAL GLY ALA SER LEU SEQRES 20 A 534 ASP ILE LEU VAL CYS PRO ARG ASP ILE HIS GLY TYR LEU SEQRES 21 A 534 ALA PRO VAL PRO LYS THR PRO LEU ALA PHE TYR GLU VAL SEQRES 22 A 534 LYS CYS ARG ALA LYS TYR ALA PHE ASP PRO MET ASP PRO SEQRES 23 A 534 SER ASP PRO THR ALA SER ALA TYR GLU ASP LEU MET ALA SEQRES 24 A 534 HIS ARG SER PRO GLU ALA PHE ARG ALA PHE ILE ARG SER SEQRES 25 A 534 ILE PRO LYS PRO SER VAL ARG TYR PHE ALA PRO GLY ARG SEQRES 26 A 534 VAL PRO GLY PRO GLU GLU ALA LEU VAL THR GLN ASP GLN SEQRES 27 A 534 ALA TRP SER GLU ALA HIS ALA SER GLY GLU LYS ARG ARG SEQRES 28 A 534 CYS SER ALA ALA ASP ARG ALA LEU VAL GLU LEU ASN SER SEQRES 29 A 534 GLY VAL VAL SER GLU VAL LEU LEU PHE GLY ALA PRO ASP SEQRES 30 A 534 LEU GLY ARG HIS THR ILE SER PRO VAL SER TRP SER SER SEQRES 31 A 534 GLY ASP LEU VAL ARG ARG GLU PRO VAL PHE ALA ASN PRO SEQRES 32 A 534 ARG HIS PRO ASN PHE LYS GLN ILE LEU VAL GLN GLY TYR SEQRES 33 A 534 VAL LEU ASP SER HIS PHE PRO ASP CYS PRO PRO HIS PRO SEQRES 34 A 534 HIS LEU VAL THR PHE ILE GLY ARG HIS ARG THR SER ALA SEQRES 35 A 534 GLU GLU GLY VAL THR PHE ARG LEU GLU ASP GLY ALA GLY SEQRES 36 A 534 ALA LEU GLY ALA ALA GLY PRO SER LYS ALA SER ILE LEU SEQRES 37 A 534 PRO ASN GLN ALA VAL PRO ILE ALA LEU ILE ILE THR PRO SEQRES 38 A 534 VAL ARG ILE ASP PRO GLU ILE TYR LYS ALA ILE GLN ARG SEQRES 39 A 534 SER SER ARG LEU ALA PHE ASP ASP THR LEU ALA GLU LEU SEQRES 40 A 534 TRP ALA SER ARG SER PRO GLY PRO GLY PRO ALA ALA ALA SEQRES 41 A 534 GLU THR THR SER SER SER PRO THR THR GLY ARG SER SER SEQRES 42 A 534 ARG HET ACT A 601 7 HET FMT A 602 5 HET GOL A 603 14 HET SO4 A 604 5 HETNAM ACT ACETATE ION HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 FMT C H2 O2 FORMUL 4 GOL C3 H8 O3 FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *65(H2 O) HELIX 1 AA1 PRO A 12 ALA A 17 1 6 HELIX 2 AA2 THR A 19 VAL A 31 1 13 HELIX 3 AA3 ALA A 33 ILE A 37 5 5 HELIX 4 AA4 GLY A 38 ALA A 57 1 20 HELIX 5 AA5 GLY A 63 ARG A 73 1 11 HELIX 6 AA6 PRO A 85 ALA A 95 1 11 HELIX 7 AA7 ASN A 98 ASP A 101 5 4 HELIX 8 AA8 CYS A 102 ARG A 110 1 9 HELIX 9 AA9 THR A 114 SER A 116 5 3 HELIX 10 AB1 ALA A 146 CYS A 165 1 20 HELIX 11 AB2 ALA A 243 ALA A 246 5 4 HELIX 12 AB3 ASP A 254 ARG A 267 1 14 HELIX 13 AB4 SER A 268 SER A 278 1 11 HELIX 14 AB5 ASP A 303 SER A 307 5 5 HELIX 15 AB6 SER A 319 SER A 330 1 12 HELIX 16 AB7 HIS A 371 SER A 386 1 16 HELIX 17 AB8 PRO A 452 ALA A 475 1 24 SHEET 1 AA1 2 LEU A 118 GLY A 121 0 SHEET 2 AA1 2 GLY A 124 PHE A 127 -1 O GLY A 124 N GLY A 121 SHEET 1 AA2 2 VAL A 200 MET A 202 0 SHEET 2 AA2 2 GLY A 210 SER A 212 -1 O ALA A 211 N LEU A 201 SHEET 1 AA3 6 ILE A 215 LEU A 216 0 SHEET 2 AA3 6 LEU A 234 CYS A 241 -1 O TYR A 237 N ILE A 215 SHEET 3 AA3 6 PRO A 393 ARG A 403 1 O VAL A 398 N LYS A 240 SHEET 4 AA3 6 VAL A 439 PRO A 447 -1 O THR A 446 N LEU A 397 SHEET 5 AA3 6 SER A 334 LEU A 338 -1 N GLU A 335 O ILE A 445 SHEET 6 AA3 6 VAL A 360 GLU A 363 -1 O GLU A 363 N SER A 334 SHEET 1 AA4 3 VAL A 284 TYR A 286 0 SHEET 2 AA4 3 LEU A 299 THR A 301 1 O LEU A 299 N ARG A 285 SHEET 3 AA4 3 PHE A 366 ALA A 367 -1 O PHE A 366 N VAL A 300 SHEET 1 AA5 3 THR A 348 ILE A 349 0 SHEET 2 AA5 3 PHE A 414 LEU A 416 1 O ARG A 415 N ILE A 349 SHEET 3 AA5 3 SER A 432 ILE A 433 -1 O ILE A 433 N PHE A 414 CRYST1 58.997 80.233 127.572 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016950 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007839 0.00000 CONECT 6624 6625 6626 6627 CONECT 6625 6624 CONECT 6626 6624 CONECT 6627 6624 6628 6629 6630 CONECT 6628 6627 CONECT 6629 6627 CONECT 6630 6627 CONECT 6631 6632 6633 6634 CONECT 6632 6631 CONECT 6633 6631 6635 CONECT 6634 6631 CONECT 6635 6633 CONECT 6636 6637 6638 6642 6643 CONECT 6637 6636 6644 CONECT 6638 6636 6639 6640 6645 CONECT 6639 6638 6646 CONECT 6640 6638 6641 6647 6648 CONECT 6641 6640 6649 CONECT 6642 6636 CONECT 6643 6636 CONECT 6644 6637 CONECT 6645 6638 CONECT 6646 6639 CONECT 6647 6640 CONECT 6648 6640 CONECT 6649 6641 CONECT 6650 6651 6652 6653 6654 CONECT 6651 6650 CONECT 6652 6650 CONECT 6653 6650 CONECT 6654 6650 MASTER 435 0 4 17 16 0 0 6 3400 1 31 42 END