HEADER CELL ADHESION 31-JAN-26 10PS TITLE CRYSTAL STRUCTURE OF SDRD A2-A3-B1-B2 DOMAINS FROM STAPHYLOCOCCUS TITLE 2 AUREUS JH1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE-ASPARTATE REPEAT-CONTAINING PROTEIN D; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: A2-A3-B1-B2 DOMAINS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS JH1; SOURCE 3 ORGANISM_TAXID: 359787; SOURCE 4 GENE: SDRD, SAV0562; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SDRD, MSCRAMM, LPXTG-MOTIF, STRUCTURAL GENOMICS, PSI-BIOLOGY, CENTER KEYWDS 2 FOR STRUCTURAL BIOLOGY OF INFECTIOUS DISEASES, CSBID, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,P.GADE,M.ENDRES,A.JOACHIMIAK,CENTER FOR STRUCTURAL BIOLOGY OF AUTHOR 2 INFECTIOUS DISEASES (CSBID) REVDAT 1 11-FEB-26 10PS 0 JRNL AUTH K.TAN,P.GADE,M.ENDRES,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF SDRD A2-A3-B1-B2 DOMAINS FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS JH1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 42858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.660 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.1000 - 4.8100 0.99 3016 148 0.1615 0.1743 REMARK 3 2 4.8100 - 3.8200 0.99 2930 143 0.1477 0.1565 REMARK 3 3 3.8200 - 3.3400 0.99 2914 142 0.1820 0.2002 REMARK 3 4 3.3400 - 3.0400 1.00 2950 145 0.2041 0.2634 REMARK 3 5 3.0400 - 2.8200 1.00 2908 142 0.2317 0.2840 REMARK 3 6 2.8200 - 2.6500 1.00 2912 142 0.2452 0.2888 REMARK 3 7 2.6500 - 2.5200 1.00 2914 143 0.2386 0.2885 REMARK 3 8 2.5200 - 2.4100 1.00 2918 143 0.2546 0.2949 REMARK 3 9 2.4100 - 2.3200 1.00 2902 142 0.2571 0.2600 REMARK 3 10 2.3200 - 2.2400 1.00 2904 143 0.2639 0.2989 REMARK 3 11 2.2400 - 2.1700 0.99 2889 140 0.2705 0.2930 REMARK 3 12 2.1700 - 2.1100 1.00 2900 141 0.2831 0.3071 REMARK 3 13 2.1100 - 2.0500 0.99 2891 140 0.3037 0.3363 REMARK 3 14 2.0500 - 2.0000 1.00 2913 143 0.3178 0.3486 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.286 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.611 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4404 REMARK 3 ANGLE : 0.453 5985 REMARK 3 CHIRALITY : 0.044 683 REMARK 3 PLANARITY : 0.003 790 REMARK 3 DIHEDRAL : 14.885 1597 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 243 THROUGH 445 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8901 -6.1922 31.8523 REMARK 3 T TENSOR REMARK 3 T11: 0.2050 T22: 0.2733 REMARK 3 T33: 0.1922 T12: -0.0207 REMARK 3 T13: -0.0381 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 3.2442 L22: 0.5331 REMARK 3 L33: 1.4777 L12: -0.8791 REMARK 3 L13: -1.8960 L23: 0.6309 REMARK 3 S TENSOR REMARK 3 S11: -0.0626 S12: -0.4067 S13: 0.0072 REMARK 3 S21: 0.0773 S22: 0.1186 S23: -0.0590 REMARK 3 S31: 0.0626 S32: 0.2698 S33: -0.0622 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 446 THROUGH 556 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2136 -0.9683 37.2089 REMARK 3 T TENSOR REMARK 3 T11: 0.1504 T22: 0.1898 REMARK 3 T33: 0.1819 T12: -0.0241 REMARK 3 T13: 0.0006 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.8541 L22: 1.7673 REMARK 3 L33: 4.8706 L12: -0.3842 REMARK 3 L13: -0.5607 L23: 0.1994 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: 0.0414 S13: 0.0106 REMARK 3 S21: -0.0325 S22: -0.0137 S23: 0.0067 REMARK 3 S31: 0.0015 S32: 0.0080 S33: 0.0319 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 557 THROUGH 677 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1110 -5.9699 -1.0642 REMARK 3 T TENSOR REMARK 3 T11: 0.1890 T22: 0.1609 REMARK 3 T33: 0.2468 T12: -0.0185 REMARK 3 T13: -0.0171 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 3.3483 L22: 2.3547 REMARK 3 L33: 2.1153 L12: -1.0824 REMARK 3 L13: -1.1550 L23: 0.5494 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: 0.0097 S13: 0.1630 REMARK 3 S21: 0.0079 S22: 0.0149 S23: -0.1620 REMARK 3 S31: -0.1001 S32: 0.0303 S33: -0.0481 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 678 THROUGH 798 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.8688 -15.9543 -16.1547 REMARK 3 T TENSOR REMARK 3 T11: 0.2818 T22: 0.1952 REMARK 3 T33: 0.2623 T12: 0.0371 REMARK 3 T13: -0.0039 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.8561 L22: 2.2081 REMARK 3 L33: 4.3199 L12: 0.2501 REMARK 3 L13: -1.7797 L23: 0.5426 REMARK 3 S TENSOR REMARK 3 S11: 0.2040 S12: 0.1046 S13: 0.1929 REMARK 3 S21: -0.4271 S22: 0.0834 S23: -0.0784 REMARK 3 S31: -0.1850 S32: -0.0970 S33: -0.2463 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 10PS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-26. REMARK 100 THE DEPOSITION ID IS D_1000304771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42903 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 27.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 1.01000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL AND 20% (W/V) PEG 2000 REMARK 280 MME, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.28500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 241 REMARK 465 ASN A 242 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 244 98.77 -60.90 REMARK 500 LYS A 266 8.51 59.29 REMARK 500 ASP A 310 0.03 -68.13 REMARK 500 ASP A 400 -131.14 57.16 REMARK 500 ASP A 434 61.35 60.90 REMARK 500 ASN A 574 9.46 -156.64 REMARK 500 ASP A 655 -165.08 -105.77 REMARK 500 ASP A 686 -0.12 -153.06 REMARK 500 ASP A 765 -168.17 -110.43 REMARK 500 ASN A 776 72.85 -152.28 REMARK 500 THR A 790 108.87 -52.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 809 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 261 OD1 REMARK 620 2 ASP A 263 OD1 76.5 REMARK 620 3 SER A 265 OG 93.5 75.8 REMARK 620 4 THR A 267 O 87.9 149.8 79.6 REMARK 620 5 ASP A 273 OD1 77.6 82.1 157.6 119.9 REMARK 620 6 ASP A 273 OD2 103.5 132.2 149.7 76.2 52.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 807 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 363 OD1 REMARK 620 2 ASP A 363 OD2 44.3 REMARK 620 3 ASP A 365 OD1 50.8 78.7 REMARK 620 4 HOH A 947 O 105.4 74.3 86.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 808 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 363 OD1 REMARK 620 2 ASP A 365 OD1 70.1 REMARK 620 3 ASP A 481 OD2 106.0 74.7 REMARK 620 4 HOH A1017 O 146.0 76.6 70.6 REMARK 620 5 HOH A1066 O 137.7 145.1 76.5 75.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 574 OD1 REMARK 620 2 LEU A 671 O 85.1 REMARK 620 3 ASP A 674 OD1 80.7 87.9 REMARK 620 4 ASP A 674 OD2 131.0 104.8 52.6 REMARK 620 5 HOH A 904 O 147.4 73.5 121.8 79.2 REMARK 620 6 HOH A 908 O 83.5 83.8 162.8 144.4 70.2 REMARK 620 7 HOH A 920 O 93.2 170.4 101.1 83.4 103.9 86.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 803 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 579 OD1 REMARK 620 2 ASN A 581 OD1 81.1 REMARK 620 3 ASN A 583 OD1 85.8 71.2 REMARK 620 4 VAL A 585 O 95.6 157.6 86.5 REMARK 620 5 GLU A 587 OE1 167.7 86.9 92.7 96.5 REMARK 620 6 GLU A 590 OE1 85.2 118.2 165.7 83.3 98.4 REMARK 620 7 GLU A 590 OE2 91.8 71.8 142.8 130.6 82.0 48.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 652 O REMARK 620 2 ASP A 655 OD1 76.0 REMARK 620 3 ASN A 657 OD1 176.7 101.0 REMARK 620 4 SER A 672 O 102.1 140.4 79.2 REMARK 620 5 HOH A 921 O 77.6 68.9 100.1 72.1 REMARK 620 6 HOH A 942 O 96.1 146.4 87.1 73.0 142.2 REMARK 620 7 HOH A 950 O 96.4 75.3 84.1 142.8 144.1 73.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 805 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 686 OD1 REMARK 620 2 MET A 781 O 82.5 REMARK 620 3 ASP A 784 OD1 77.1 88.4 REMARK 620 4 ASP A 784 OD2 126.9 109.0 52.7 REMARK 620 5 HOH A 911 O 148.7 79.4 127.3 83.3 REMARK 620 6 HOH A1039 O 92.1 171.9 96.2 79.1 102.8 REMARK 620 7 HOH A1070 O 75.3 83.7 152.0 154.7 77.5 89.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 806 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 691 OD1 REMARK 620 2 ASN A 693 OD1 76.0 REMARK 620 3 ASN A 695 OD1 85.1 70.5 REMARK 620 4 ILE A 697 O 93.0 153.4 84.6 REMARK 620 5 ASP A 699 OD2 167.8 94.6 99.2 98.7 REMARK 620 6 GLU A 702 OE1 90.2 121.0 166.1 82.6 88.1 REMARK 620 7 GLU A 702 OE2 85.4 71.1 141.6 133.0 84.2 50.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 804 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 762 O REMARK 620 2 ASP A 765 OD1 79.2 REMARK 620 3 ASN A 767 OD1 174.2 95.0 REMARK 620 4 THR A 782 O 100.8 144.5 83.3 REMARK 620 5 HOH A 948 O 84.7 72.4 92.8 72.3 REMARK 620 6 HOH A 993 O 90.3 140.0 94.7 75.3 145.5 REMARK 620 7 HOH A1011 O 99.6 74.7 79.5 138.7 145.3 69.1 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP98781 RELATED DB: TARGETTRACK DBREF 10PS A 244 798 UNP Q99W47 SDRD_STAAM 244 798 SEQADV 10PS SER A 241 UNP Q99W47 EXPRESSION TAG SEQADV 10PS ASN A 242 UNP Q99W47 EXPRESSION TAG SEQADV 10PS ALA A 243 UNP Q99W47 EXPRESSION TAG SEQRES 1 A 558 SER ASN ALA SER LYS ASN VAL ASN ASP LEU ILE THR SER SEQRES 2 A 558 ASN THR THR LEU THR VAL VAL ASP ALA ASP ASN SER LYS SEQRES 3 A 558 THR ILE VAL PRO ALA GLN ASP TYR LEU SER LEU LYS SER SEQRES 4 A 558 GLN ILE THR VAL ASP ASP LYS VAL LYS SER GLY ASP TYR SEQRES 5 A 558 PHE THR ILE LYS TYR SER ASP THR VAL GLN VAL TYR GLY SEQRES 6 A 558 LEU ASN PRO GLU ASP ILE LYS ASN ILE GLY ASP ILE LYS SEQRES 7 A 558 ASP PRO ASN ASN GLY GLU THR ILE ALA THR ALA LYS HIS SEQRES 8 A 558 ASP THR ALA ASN ASN LEU ILE THR TYR THR PHE THR ASP SEQRES 9 A 558 TYR VAL ASP ARG PHE ASN SER VAL LYS MET GLY ILE ASN SEQRES 10 A 558 TYR SER ILE TYR MET ASP ALA ASP THR ILE PRO VAL ASP SEQRES 11 A 558 LYS LYS ASP VAL PRO PHE SER VAL THR ILE GLY ASN GLN SEQRES 12 A 558 ILE THR THR THR THR ALA ASP ILE THR TYR PRO ALA TYR SEQRES 13 A 558 LYS GLU ALA ASP ASN ASN SER ILE GLY SER ALA PHE THR SEQRES 14 A 558 GLU THR VAL SER HIS VAL GLY ASN VAL GLU ASP PRO GLY SEQRES 15 A 558 TYR TYR ASN GLN VAL VAL TYR VAL ASN PRO MET ASP LYS SEQRES 16 A 558 ASP LEU LYS GLY ALA LYS LEU LYS VAL GLU ALA TYR HIS SEQRES 17 A 558 PRO LYS TYR PRO THR ASN ILE GLY GLN ILE ASN GLN ASN SEQRES 18 A 558 VAL THR ASN ILE LYS ILE TYR ARG VAL PRO GLU GLY TYR SEQRES 19 A 558 THR LEU ASN LYS GLY TYR ASP VAL ASN THR ASN ASP LEU SEQRES 20 A 558 VAL ASP VAL THR ASP GLU PHE LYS ASN LYS MET THR TYR SEQRES 21 A 558 GLY SER ASN GLN SER VAL ASN LEU ASP PHE GLY ASP ILE SEQRES 22 A 558 THR SER ALA TYR VAL VAL MET VAL ASN THR LYS PHE GLN SEQRES 23 A 558 TYR THR ASN SER GLU SER PRO THR LEU VAL GLN MET ALA SEQRES 24 A 558 THR LEU SER SER THR GLY ASN LYS SER VAL SER THR GLY SEQRES 25 A 558 ASN ALA LEU GLY PHE THR ASN ASN GLN SER GLY GLY ALA SEQRES 26 A 558 GLY GLN GLU VAL TYR LYS ILE GLY ASN TYR VAL TRP GLU SEQRES 27 A 558 ASP THR ASN LYS ASN GLY VAL GLN GLU LEU GLY GLU LYS SEQRES 28 A 558 GLY VAL GLY ASN VAL THR VAL THR VAL PHE ASP ASN ASN SEQRES 29 A 558 THR ASN THR LYS VAL GLY GLU ALA VAL THR LYS GLU ASP SEQRES 30 A 558 GLY SER TYR LEU ILE PRO ASN LEU PRO ASN GLY ASP TYR SEQRES 31 A 558 ARG VAL GLU PHE SER ASN LEU PRO LYS GLY TYR GLU VAL SEQRES 32 A 558 THR PRO SER LYS GLN GLY ASN ASN GLU GLU LEU ASP SER SEQRES 33 A 558 ASN GLY LEU SER SER VAL ILE THR VAL ASN GLY LYS ASP SEQRES 34 A 558 ASN LEU SER ALA ASP LEU GLY ILE TYR LYS PRO LYS TYR SEQRES 35 A 558 ASN LEU GLY ASP TYR VAL TRP GLU ASP THR ASN LYS ASN SEQRES 36 A 558 GLY ILE GLN ASP GLN ASP GLU LYS GLY ILE SER GLY VAL SEQRES 37 A 558 THR VAL THR LEU LYS ASP GLU ASN GLY ASN VAL LEU LYS SEQRES 38 A 558 THR VAL THR THR ASP ALA ASP GLY LYS TYR LYS PHE THR SEQRES 39 A 558 ASP LEU ASP ASN GLY ASN TYR LYS VAL GLU PHE THR THR SEQRES 40 A 558 PRO GLU GLY TYR THR PRO THR THR VAL THR SER GLY SER SEQRES 41 A 558 ASP ILE GLU LYS ASP SER ASN GLY LEU THR THR THR GLY SEQRES 42 A 558 VAL ILE ASN GLY ALA ASP ASN MET THR LEU ASP SER GLY SEQRES 43 A 558 PHE TYR LYS THR PRO LYS TYR ASN LEU GLY ASN TYR HET CA A 801 1 HET CA A 802 1 HET CA A 803 1 HET CA A 804 1 HET CA A 805 1 HET CA A 806 1 HET CA A 807 1 HET CA A 808 1 HET CA A 809 1 HET GOL A 810 6 HET EDO A 811 4 HET EDO A 812 4 HET ACT A 813 4 HET EDO A 814 4 HET EDO A 815 4 HET EDO A 816 4 HET EDO A 817 4 HET EDO A 818 4 HET CL A 819 1 HET CL A 820 1 HET CL A 821 1 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA 9(CA 2+) FORMUL 11 GOL C3 H8 O3 FORMUL 12 EDO 7(C2 H6 O2) FORMUL 14 ACT C2 H3 O2 1- FORMUL 20 CL 3(CL 1-) FORMUL 23 HOH *256(H2 O) HELIX 1 AA1 VAL A 247 ASP A 249 5 3 HELIX 2 AA2 ASN A 307 ILE A 314 5 8 HELIX 3 AA3 THR A 333 ASN A 335 5 3 HELIX 4 AA4 ASP A 344 PHE A 349 1 6 HELIX 5 AA5 ASN A 483 LEU A 487 5 5 HELIX 6 AA6 THR A 491 ASN A 496 5 6 SHEET 1 AA1 4 ILE A 251 VAL A 260 0 SHEET 2 AA1 4 TYR A 274 VAL A 283 -1 O THR A 282 N THR A 252 SHEET 3 AA1 4 VAL A 352 MET A 362 -1 O MET A 354 N ILE A 281 SHEET 4 AA1 4 VAL A 301 GLN A 302 -1 N GLN A 302 O TYR A 361 SHEET 1 AA2 6 ILE A 317 LYS A 318 0 SHEET 2 AA2 6 THR A 325 ASP A 332 -1 O ILE A 326 N ILE A 317 SHEET 3 AA2 6 LEU A 337 PHE A 342 -1 O THR A 339 N LYS A 330 SHEET 4 AA2 6 TYR A 292 TYR A 297 -1 N PHE A 293 O TYR A 340 SHEET 5 AA2 6 LYS A 371 ILE A 380 -1 O THR A 379 N LYS A 296 SHEET 6 AA2 6 GLN A 383 ILE A 391 -1 O ALA A 389 N VAL A 374 SHEET 1 AA3 6 LYS A 397 ALA A 399 0 SHEET 2 AA3 6 ASN A 402 SER A 413 -1 O ASN A 402 N ALA A 399 SHEET 3 AA3 6 GLY A 422 VAL A 430 -1 O ASN A 425 N GLU A 410 SHEET 4 AA3 6 TYR A 517 LYS A 524 -1 O TYR A 517 N VAL A 430 SHEET 5 AA3 6 ASN A 464 ARG A 469 -1 N ASN A 464 O ASN A 522 SHEET 6 AA3 6 VAL A 488 ASP A 489 -1 O VAL A 488 N ARG A 469 SHEET 1 AA4 5 MET A 498 GLY A 501 0 SHEET 2 AA4 5 SER A 505 ILE A 513 -1 O ASN A 507 N THR A 499 SHEET 3 AA4 5 LEU A 437 GLU A 445 -1 N LEU A 442 O LEU A 508 SHEET 4 AA4 5 THR A 534 SER A 542 -1 O MET A 538 N GLU A 445 SHEET 5 AA4 5 VAL A 549 GLY A 556 -1 O THR A 551 N ALA A 539 SHEET 1 AA5 4 SER A 619 LEU A 625 0 SHEET 2 AA5 4 TYR A 570 GLU A 578 -1 N TYR A 570 O LEU A 625 SHEET 3 AA5 4 ASN A 670 TYR A 678 1 O ASN A 670 N LYS A 571 SHEET 4 AA5 4 GLU A 642 VAL A 643 -1 N GLU A 642 O TYR A 678 SHEET 1 AA6 4 THR A 607 VAL A 613 0 SHEET 2 AA6 4 THR A 597 ASP A 602 -1 N ASP A 602 O THR A 607 SHEET 3 AA6 4 GLY A 628 SER A 635 -1 O GLU A 633 N THR A 599 SHEET 4 AA6 4 SER A 660 VAL A 665 -1 O ILE A 663 N TYR A 630 SHEET 1 AA7 4 LYS A 730 LEU A 736 0 SHEET 2 AA7 4 TYR A 682 GLU A 690 -1 N LEU A 684 O PHE A 733 SHEET 3 AA7 4 SER A 785 LYS A 789 1 O PHE A 787 N TRP A 689 SHEET 4 AA7 4 TYR A 751 PRO A 753 -1 N THR A 752 O TYR A 788 SHEET 1 AA8 4 VAL A 719 THR A 724 0 SHEET 2 AA8 4 THR A 709 LYS A 713 -1 N LEU A 712 O LYS A 721 SHEET 3 AA8 4 GLY A 739 PHE A 745 -1 O GLU A 744 N THR A 711 SHEET 4 AA8 4 THR A 770 ILE A 775 -1 O ILE A 775 N GLY A 739 LINK OD1 ASP A 261 CA CA A 809 1555 1555 2.31 LINK OD1 ASP A 263 CA CA A 809 1555 1555 2.37 LINK OG SER A 265 CA CA A 809 1555 1555 2.46 LINK O THR A 267 CA CA A 809 1555 1555 2.36 LINK OD1 ASP A 273 CA CA A 809 1555 1555 2.58 LINK OD2 ASP A 273 CA CA A 809 1555 1555 2.36 LINK OD1 ASP A 363 CA CA A 807 1555 1555 3.15 LINK OD2 ASP A 363 CA CA A 807 1555 1555 2.28 LINK OD1 ASP A 363 CA CA A 808 1555 1555 2.39 LINK OD1 ASP A 365 CA CA A 807 1555 1555 3.15 LINK OD1 ASP A 365 CA CA A 808 1555 1555 2.30 LINK OD2 ASP A 481 CA CA A 808 1555 1555 2.33 LINK OD1 ASN A 574 CA CA A 802 1555 1555 2.27 LINK OD1 ASP A 579 CA CA A 803 1555 1555 2.22 LINK OD1 ASN A 581 CA CA A 803 1555 1555 2.51 LINK OD1 ASN A 583 CA CA A 803 1555 1555 2.33 LINK O VAL A 585 CA CA A 803 1555 1555 2.34 LINK OE1 GLU A 587 CA CA A 803 1555 1555 2.29 LINK OE1 GLU A 590 CA CA A 803 1555 1555 2.78 LINK OE2 GLU A 590 CA CA A 803 1555 1555 2.51 LINK O GLU A 652 CA CA A 801 1555 1555 2.24 LINK OD1 ASP A 655 CA CA A 801 1555 1555 2.45 LINK OD1 ASN A 657 CA CA A 801 1555 1555 2.23 LINK O LEU A 671 CA CA A 802 1555 1555 2.26 LINK O SER A 672 CA CA A 801 1555 1555 2.42 LINK OD1 ASP A 674 CA CA A 802 1555 1555 2.55 LINK OD2 ASP A 674 CA CA A 802 1555 1555 2.39 LINK OD1 ASP A 686 CA CA A 805 1555 1555 2.46 LINK OD1 ASP A 691 CA CA A 806 1555 1555 2.25 LINK OD1 ASN A 693 CA CA A 806 1555 1555 2.36 LINK OD1 ASN A 695 CA CA A 806 1555 1555 2.44 LINK O ILE A 697 CA CA A 806 1555 1555 2.49 LINK OD2 ASP A 699 CA CA A 806 1555 1555 2.35 LINK OE1 GLU A 702 CA CA A 806 1555 1555 2.61 LINK OE2 GLU A 702 CA CA A 806 1555 1555 2.53 LINK O ILE A 762 CA CA A 804 1555 1555 2.24 LINK OD1 ASP A 765 CA CA A 804 1555 1555 2.45 LINK OD1 ASN A 767 CA CA A 804 1555 1555 2.33 LINK O MET A 781 CA CA A 805 1555 1555 2.33 LINK O THR A 782 CA CA A 804 1555 1555 2.41 LINK OD1 ASP A 784 CA CA A 805 1555 1555 2.56 LINK OD2 ASP A 784 CA CA A 805 1555 1555 2.37 LINK CA CA A 801 O HOH A 921 1555 1555 2.48 LINK CA CA A 801 O HOH A 942 1555 1555 2.42 LINK CA CA A 801 O HOH A 950 1555 1555 2.38 LINK CA CA A 802 O HOH A 904 1555 1555 2.37 LINK CA CA A 802 O HOH A 908 1555 1555 2.42 LINK CA CA A 802 O HOH A 920 1555 1555 2.24 LINK CA CA A 804 O HOH A 948 1555 1555 2.36 LINK CA CA A 804 O HOH A 993 1555 1555 2.40 LINK CA CA A 804 O HOH A1011 1555 1555 2.71 LINK CA CA A 805 O HOH A 911 1555 1555 2.34 LINK CA CA A 805 O HOH A1039 1555 1555 2.35 LINK CA CA A 805 O HOH A1070 1555 1555 2.55 LINK CA CA A 807 O HOH A 947 1555 1555 2.38 LINK CA CA A 808 O HOH A1017 1555 1555 2.96 LINK CA CA A 808 O HOH A1066 1555 1555 2.43 CISPEP 1 GLY A 573 ASN A 574 0 3.78 CISPEP 2 GLY A 685 ASP A 686 0 4.13 CRYST1 59.190 58.570 94.400 90.00 101.35 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016895 0.000000 0.003391 0.00000 SCALE2 0.000000 0.017074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010805 0.00000 CONECT 138 4308 CONECT 151 4308 CONECT 166 4308 CONECT 179 4308 CONECT 225 4308 CONECT 226 4308 CONECT 951 4306 4307 CONECT 952 4306 CONECT 964 4306 4307 CONECT 1875 4307 CONECT 2569 4301 CONECT 2619 4302 CONECT 2634 4302 CONECT 2651 4302 CONECT 2660 4302 CONECT 2680 4302 CONECT 2701 4302 CONECT 2702 4302 CONECT 3170 4300 CONECT 3208 4300 CONECT 3222 4300 CONECT 3317 4301 CONECT 3325 4300 CONECT 3339 4301 CONECT 3340 4301 CONECT 3436 4304 CONECT 3486 4305 CONECT 3501 4305 CONECT 3518 4305 CONECT 3527 4305 CONECT 3548 4305 CONECT 3573 4305 CONECT 3574 4305 CONECT 4020 4303 CONECT 4049 4303 CONECT 4063 4303 CONECT 4153 4304 CONECT 4161 4303 CONECT 4179 4304 CONECT 4180 4304 CONECT 4300 3170 3208 3222 3325 CONECT 4300 4370 4391 4399 CONECT 4301 2569 3317 3339 3340 CONECT 4301 4353 4357 4369 CONECT 4302 2619 2634 2651 2660 CONECT 4302 2680 2701 2702 CONECT 4303 4020 4049 4063 4161 CONECT 4303 4397 4442 4460 CONECT 4304 3436 4153 4179 4180 CONECT 4304 4360 4488 4519 CONECT 4305 3486 3501 3518 3527 CONECT 4305 3548 3573 3574 CONECT 4306 951 952 964 4396 CONECT 4307 951 964 1875 4466 CONECT 4307 4515 CONECT 4308 138 151 166 179 CONECT 4308 225 226 CONECT 4309 4310 4311 CONECT 4310 4309 CONECT 4311 4309 4312 4313 CONECT 4312 4311 CONECT 4313 4311 4314 CONECT 4314 4313 CONECT 4315 4316 4317 CONECT 4316 4315 CONECT 4317 4315 4318 CONECT 4318 4317 CONECT 4319 4320 4321 CONECT 4320 4319 CONECT 4321 4319 4322 CONECT 4322 4321 CONECT 4323 4324 4325 4326 CONECT 4324 4323 CONECT 4325 4323 CONECT 4326 4323 CONECT 4327 4328 4329 CONECT 4328 4327 CONECT 4329 4327 4330 CONECT 4330 4329 CONECT 4331 4332 4333 CONECT 4332 4331 CONECT 4333 4331 4334 CONECT 4334 4333 CONECT 4335 4336 4337 CONECT 4336 4335 CONECT 4337 4335 4338 CONECT 4338 4337 CONECT 4339 4340 4341 CONECT 4340 4339 CONECT 4341 4339 4342 CONECT 4342 4341 CONECT 4343 4344 4345 CONECT 4344 4343 CONECT 4345 4343 4346 CONECT 4346 4345 CONECT 4353 4301 CONECT 4357 4301 CONECT 4360 4304 CONECT 4369 4301 CONECT 4370 4300 CONECT 4391 4300 CONECT 4396 4306 CONECT 4397 4303 CONECT 4399 4300 CONECT 4442 4303 CONECT 4460 4303 CONECT 4466 4307 CONECT 4488 4304 CONECT 4515 4307 CONECT 4519 4304 MASTER 400 0 21 6 37 0 0 6 4589 1 110 43 END