data_110D
# 
_entry.id   110D 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.385 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   110D         pdb_0000110d 10.2210/pdb110d/pdb 
RCSB  DDF039       ?            ?                   
WWPDB D_1000170027 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1993-04-15 
2 'Structure model' 1 1 2008-05-22 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2024-02-07 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Data collection'           
4 4 'Structure model' 'Database references'       
5 4 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' chem_comp_atom 
2 4 'Structure model' chem_comp_bond 
3 4 'Structure model' database_2     
4 4 'Structure model' struct_site    
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_database_2.pdbx_DOI'                
2 4 'Structure model' '_database_2.pdbx_database_accession' 
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'      
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'      
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'       
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        110D 
_pdbx_database_status.recvd_initial_deposition_date   1993-01-21 
_pdbx_database_status.deposit_site                    BNL 
_pdbx_database_status.process_site                    NDB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Leonard, G.A.'     1 
'Hambley, T.W.'     2 
'McAuley-Hecht, K.' 3 
'Brown, T.'         4 
'Hunter, W.N.'      5 
# 
_citation.id                        primary 
_citation.title                     
;Anthracycline-DNA interactions at unfavourable base-pair triplet-binding sites: structures of d(CGGCCG)/daunomycin and d(TGGCCA)/adriamycin complexes.
;
_citation.journal_abbrev            'Acta Crystallogr.,Sect.D' 
_citation.journal_volume            49 
_citation.page_first                458 
_citation.page_last                 467 
_citation.year                      1993 
_citation.journal_id_ASTM           ABCRE6 
_citation.country                   DK 
_citation.journal_id_ISSN           0907-4449 
_citation.journal_id_CSD            0766 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   15299505 
_citation.pdbx_database_id_DOI      10.1107/S090744499300527X 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Leonard, G.A.'     1 ? 
primary 'Hambley, T.W.'     2 ? 
primary 'McAuley-Hecht, K.' 3 ? 
primary 'Brown, T.'         4 ? 
primary 'Hunter, W.N.'      5 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;DNA (5'-D(*CP*GP*GP*CP*CP*G)-3')
;
1810.205 1  ? ? ? ? 
2 non-polymer syn DAUNOMYCIN                         527.520  1  ? ? ? ? 
3 water       nat water                              18.015   49 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DG)(DC)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGGCCG 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 DAUNOMYCIN DM1 
3 water      HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 DC n 
1 2 DG n 
1 3 DG n 
1 4 DC n 
1 5 DC n 
1 6 DG n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ?            'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ?            'C10 H14 N5 O7 P' 347.221 
DM1 non-polymer   . DAUNOMYCIN                           DAUNORUBICIN 'C27 H29 N O10'   527.520 
HOH non-polymer   . WATER                                ?            'H2 O'            18.015  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 DC 1 1 1 DC C A . n 
A 1 2 DG 2 2 2 DG G A . n 
A 1 3 DG 3 3 3 DG G A . n 
A 1 4 DC 4 4 4 DC C A . n 
A 1 5 DC 5 5 5 DC C A . n 
A 1 6 DG 6 6 6 DG G A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 DM1 1  7  7  DM1 DM1 A . 
C 3 HOH 1  8  8  HOH HOH A . 
C 3 HOH 2  9  9  HOH HOH A . 
C 3 HOH 3  10 10 HOH HOH A . 
C 3 HOH 4  11 11 HOH HOH A . 
C 3 HOH 5  12 12 HOH HOH A . 
C 3 HOH 6  13 13 HOH HOH A . 
C 3 HOH 7  14 14 HOH HOH A . 
C 3 HOH 8  15 15 HOH HOH A . 
C 3 HOH 9  16 16 HOH HOH A . 
C 3 HOH 10 17 17 HOH HOH A . 
C 3 HOH 11 18 18 HOH HOH A . 
C 3 HOH 12 19 19 HOH HOH A . 
C 3 HOH 13 20 20 HOH HOH A . 
C 3 HOH 14 21 21 HOH HOH A . 
C 3 HOH 15 22 22 HOH HOH A . 
C 3 HOH 16 23 23 HOH HOH A . 
C 3 HOH 17 24 24 HOH HOH A . 
C 3 HOH 18 25 25 HOH HOH A . 
C 3 HOH 19 26 26 HOH HOH A . 
C 3 HOH 20 27 27 HOH HOH A . 
C 3 HOH 21 28 28 HOH HOH A . 
C 3 HOH 22 29 29 HOH HOH A . 
C 3 HOH 23 30 30 HOH HOH A . 
C 3 HOH 24 31 31 HOH HOH A . 
C 3 HOH 25 32 32 HOH HOH A . 
C 3 HOH 26 33 33 HOH HOH A . 
C 3 HOH 27 34 34 HOH HOH A . 
C 3 HOH 28 35 35 HOH HOH A . 
C 3 HOH 29 36 36 HOH HOH A . 
C 3 HOH 30 37 37 HOH HOH A . 
C 3 HOH 31 38 38 HOH HOH A . 
C 3 HOH 32 39 39 HOH HOH A . 
C 3 HOH 33 40 40 HOH HOH A . 
C 3 HOH 34 41 41 HOH HOH A . 
C 3 HOH 35 42 42 HOH HOH A . 
C 3 HOH 36 43 43 HOH HOH A . 
C 3 HOH 37 44 44 HOH HOH A . 
C 3 HOH 38 45 45 HOH HOH A . 
C 3 HOH 39 46 46 HOH HOH A . 
C 3 HOH 40 47 47 HOH HOH A . 
C 3 HOH 41 48 48 HOH HOH A . 
C 3 HOH 42 49 49 HOH HOH A . 
C 3 HOH 43 50 50 HOH HOH A . 
C 3 HOH 44 51 51 HOH HOH A . 
C 3 HOH 45 52 52 HOH HOH A . 
C 3 HOH 46 53 53 HOH HOH A . 
C 3 HOH 47 54 54 HOH HOH A . 
C 3 HOH 48 55 55 HOH HOH A . 
C 3 HOH 49 56 56 HOH HOH A . 
# 
_software.name             NUCLSQ 
_software.classification   refinement 
_software.version          . 
_software.citation_id      ? 
_software.pdbx_ordinal     1 
# 
_cell.entry_id           110D 
_cell.length_a           28.070 
_cell.length_b           28.070 
_cell.length_c           53.350 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         110D 
_symmetry.space_group_name_H-M             'P 41 21 2' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                92 
# 
_exptl.entry_id          110D 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.90 
_exptl_crystal.density_percent_sol   57.63 
_exptl_crystal.description           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, SITTING DROP' 
_exptl_crystal_grow.temp            277.00 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6.60 
_exptl_crystal_grow.pdbx_details    'pH 6.60, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 WATER        ? ? ? 
1 2 1 MPD          ? ? ? 
1 3 1 MGCL2        ? ? ? 
1 4 1 SPERMINE_HCL ? ? ? 
1 5 2 WATER        ? ? ? 
1 6 2 MPD          ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           ? 
_diffrn.ambient_temp_details   'ROOM TEMPERATURE' 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               DIFFRACTOMETER 
_diffrn_detector.type                   'RIGAKU AFC-5R' 
_diffrn_detector.pdbx_collection_date   ? 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   ? 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             ? 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   . 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'ROTATING ANODE' 
_diffrn_source.type                        'RIGAKU RU200' 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     110D 
_reflns.observed_criterion_sigma_I   ? 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             ? 
_reflns.d_resolution_high            1.900 
_reflns.number_obs                   1742 
_reflns.number_all                   3252 
_reflns.percent_possible_obs         ? 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_refine.entry_id                                 110D 
_refine.ls_number_reflns_obs                     1108 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          2.000 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             7.000 
_refine.ls_d_res_high                            1.900 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_obs                          0.2080000 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       ? 
_refine.ls_R_factor_R_free                       ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   120 
_refine_hist.pdbx_number_atoms_ligand         38 
_refine_hist.number_atoms_solvent             49 
_refine_hist.number_atoms_total               207 
_refine_hist.d_res_high                       1.900 
_refine_hist.d_res_low                        7.000 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
n_bond_d               ?      ?     ? ? 'X-RAY DIFFRACTION' ? 
n_angle_d              ?      ?     ? ? 'X-RAY DIFFRACTION' ? 
n_planar_d             ?      ?     ? ? 'X-RAY DIFFRACTION' ? 
n_hb_or_metal_coord    ?      ?     ? ? 'X-RAY DIFFRACTION' ? 
n_sugar_bond_it        9.900  8.000 ? ? 'X-RAY DIFFRACTION' ? 
n_sugar_angle_it       12.400 12.00 ? ? 'X-RAY DIFFRACTION' ? 
n_phos_bond_it         12.600 12.00 ? ? 'X-RAY DIFFRACTION' ? 
n_phos_angle_it        14.240 12.00 ? ? 'X-RAY DIFFRACTION' ? 
n_bond_angle_restr     ?      ?     ? ? 'X-RAY DIFFRACTION' ? 
n_dihedral_angle_restr ?      ?     ? ? 'X-RAY DIFFRACTION' ? 
n_impr_tor             ?      ?     ? ? 'X-RAY DIFFRACTION' ? 
n_sugar_bond_d         0.022  0.017 ? ? 'X-RAY DIFFRACTION' ? 
n_sugar_bond_angle_d   0.054  0.030 ? ? 'X-RAY DIFFRACTION' ? 
n_phos_bond_d          0.040  0.025 ? ? 'X-RAY DIFFRACTION' ? 
n_phos_bond_angle_d    0.062  0.030 ? ? 'X-RAY DIFFRACTION' ? 
n_plane_restr          0.016  0.015 ? ? 'X-RAY DIFFRACTION' ? 
n_chiral_restr         ?      ?     ? ? 'X-RAY DIFFRACTION' ? 
n_singtor_nbd          0.069  0.063 ? ? 'X-RAY DIFFRACTION' ? 
n_multtor_nbd          0.135  0.063 ? ? 'X-RAY DIFFRACTION' ? 
n_xhyhbond_nbd         ?      ?     ? ? 'X-RAY DIFFRACTION' ? 
# 
_database_PDB_matrix.entry_id          110D 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  110D 
_struct.title                     
;ANTHRACYCLINE-DNA INTERACTIONS AT UNFAVOURABLE BASE BASE-PAIR TRIPLET-BINDING SITES: STRUCTURES OF D(CGGCCG)/DAUNOMYCIN AND D(TGGCCA)/ADRIAMYCIN COMPL
;
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        110D 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    110D 
_struct_ref.pdbx_db_accession          110D 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              110D 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 6 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             110D 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  6 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       6 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1,2 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C 
# 
loop_
_pdbx_struct_oper_list.id 
_pdbx_struct_oper_list.type 
_pdbx_struct_oper_list.name 
_pdbx_struct_oper_list.symmetry_operation 
_pdbx_struct_oper_list.matrix[1][1] 
_pdbx_struct_oper_list.matrix[1][2] 
_pdbx_struct_oper_list.matrix[1][3] 
_pdbx_struct_oper_list.vector[1] 
_pdbx_struct_oper_list.matrix[2][1] 
_pdbx_struct_oper_list.matrix[2][2] 
_pdbx_struct_oper_list.matrix[2][3] 
_pdbx_struct_oper_list.vector[2] 
_pdbx_struct_oper_list.matrix[3][1] 
_pdbx_struct_oper_list.matrix[3][2] 
_pdbx_struct_oper_list.matrix[3][3] 
_pdbx_struct_oper_list.vector[3] 
1 'identity operation'         1_555 x,y,z        1.0000000000 0.0000000000  0.0000000000 0.0000000000 0.0000000000  1.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000  0.0000000000  
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 26.6750000000 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog2  hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog3  hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog4  hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog5  hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog6  hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog7  hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 3 A DC 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog8  hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 3 A DC 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog9  hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 3 A DC 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 4 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 4 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 4 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A DM1 7 ? 8 'BINDING SITE FOR RESIDUE DM1 A 7' 
1   ?        ? ?   ? ? ? ?                                  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1 AC1 8 DC  A 1 ? DC  A 1  . ? 8_555 ? 
2 AC1 8 DG  A 2 ? DG  A 2  . ? 8_555 ? 
3 AC1 8 DG  A 3 ? DG  A 3  . ? 8_555 ? 
4 AC1 8 DC  A 5 ? DC  A 5  . ? 1_555 ? 
5 AC1 8 DG  A 6 ? DG  A 6  . ? 1_555 ? 
6 AC1 8 HOH C . ? HOH A 34 . ? 1_555 ? 
7 AC1 8 HOH C . ? HOH A 36 . ? 1_555 ? 
8 AC1 8 HOH C . ? HOH A 50 . ? 1_555 ? 
# 
_pdbx_validate_symm_contact.id                1 
_pdbx_validate_symm_contact.PDB_model_num     1 
_pdbx_validate_symm_contact.auth_atom_id_1    O 
_pdbx_validate_symm_contact.auth_asym_id_1    A 
_pdbx_validate_symm_contact.auth_comp_id_1    HOH 
_pdbx_validate_symm_contact.auth_seq_id_1     37 
_pdbx_validate_symm_contact.PDB_ins_code_1    ? 
_pdbx_validate_symm_contact.label_alt_id_1    ? 
_pdbx_validate_symm_contact.site_symmetry_1   1_555 
_pdbx_validate_symm_contact.auth_atom_id_2    O 
_pdbx_validate_symm_contact.auth_asym_id_2    A 
_pdbx_validate_symm_contact.auth_comp_id_2    HOH 
_pdbx_validate_symm_contact.auth_seq_id_2     43 
_pdbx_validate_symm_contact.PDB_ins_code_2    ? 
_pdbx_validate_symm_contact.label_alt_id_2    ? 
_pdbx_validate_symm_contact.site_symmetry_2   5_445 
_pdbx_validate_symm_contact.dist              2.04 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1 1 "O3'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.356 1.419 -0.063 0.006 N 
2 1 N3    A DC 1 ? ? C4    A DC 1 ? ? 1.379 1.335 0.044  0.007 N 
3 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.385 1.446 -0.061 0.010 N 
4 1 N7    A DG 3 ? ? C8    A DG 3 ? ? 1.354 1.305 0.049  0.006 N 
5 1 C8    A DG 3 ? ? N9    A DG 3 ? ? 1.329 1.374 -0.045 0.007 N 
6 1 "O4'" A DC 4 ? ? "C4'" A DC 4 ? ? 1.379 1.446 -0.067 0.010 N 
7 1 N1    A DC 4 ? ? C6    A DC 4 ? ? 1.325 1.367 -0.042 0.006 N 
8 1 C2    A DC 4 ? ? N3    A DC 4 ? ? 1.403 1.353 0.050  0.008 N 
9 1 N3    A DC 5 ? ? C4    A DC 5 ? ? 1.293 1.335 -0.042 0.007 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 104.12 109.40 -5.28  0.80 N 
2  1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? "O4'" A DC 1 ? ? 117.69 109.80 7.89   1.10 N 
3  1 N1    A DC 1 ? ? C2    A DC 1 ? ? O2    A DC 1 ? ? 124.75 118.90 5.85   0.60 N 
4  1 N3    A DC 1 ? ? C2    A DC 1 ? ? O2    A DC 1 ? ? 116.12 121.90 -5.78  0.70 N 
5  1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P     A DG 2 ? ? 153.99 119.70 34.29  1.20 Y 
6  1 OP1   A DG 2 ? ? P     A DG 2 ? ? OP2   A DG 2 ? ? 107.21 119.60 -12.39 1.50 N 
7  1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 94.50  102.40 -7.90  0.80 N 
8  1 C6    A DG 2 ? ? N1    A DG 2 ? ? C2    A DG 2 ? ? 118.03 125.10 -7.07  0.60 N 
9  1 N1    A DG 2 ? ? C2    A DG 2 ? ? N3    A DG 2 ? ? 127.73 123.90 3.83   0.60 N 
10 1 C5    A DG 2 ? ? C6    A DG 2 ? ? N1    A DG 2 ? ? 117.99 111.50 6.49   0.50 N 
11 1 C4    A DG 2 ? ? C5    A DG 2 ? ? N7    A DG 2 ? ? 107.01 110.80 -3.79  0.40 N 
12 1 C5    A DG 2 ? ? N7    A DG 2 ? ? C8    A DG 2 ? ? 108.74 104.30 4.44   0.50 N 
13 1 C6    A DG 2 ? ? C5    A DG 2 ? ? N7    A DG 2 ? ? 134.91 130.40 4.51   0.60 N 
14 1 N3    A DG 2 ? ? C2    A DG 2 ? ? N2    A DG 2 ? ? 115.25 119.90 -4.65  0.70 N 
15 1 C5    A DG 2 ? ? C6    A DG 2 ? ? O6    A DG 2 ? ? 124.15 128.60 -4.45  0.60 N 
16 1 "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? "C4'" A DG 3 ? ? 103.89 109.40 -5.51  0.80 N 
17 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9    A DG 3 ? ? 112.13 108.30 3.83   0.30 N 
18 1 N1    A DG 3 ? ? C2    A DG 3 ? ? N3    A DG 3 ? ? 127.58 123.90 3.68   0.60 N 
19 1 N1    A DG 3 ? ? C2    A DG 3 ? ? N2    A DG 3 ? ? 110.42 116.20 -5.78  0.90 N 
20 1 N1    A DG 3 ? ? C6    A DG 3 ? ? O6    A DG 3 ? ? 113.98 119.90 -5.92  0.60 N 
21 1 C5    A DG 3 ? ? C6    A DG 3 ? ? O6    A DG 3 ? ? 134.91 128.60 6.31   0.60 N 
22 1 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P     A DC 4 ? ? 131.53 119.70 11.83  1.20 Y 
23 1 "O5'" A DC 4 ? ? P     A DC 4 ? ? OP2   A DC 4 ? ? 128.30 110.70 17.60  1.20 N 
24 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? "C2'" A DC 4 ? ? 99.68  105.90 -6.22  0.80 N 
25 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1    A DC 4 ? ? 110.79 108.30 2.49   0.30 N 
26 1 N3    A DC 4 ? ? C4    A DC 4 ? ? C5    A DC 4 ? ? 119.12 121.90 -2.78  0.40 N 
27 1 N1    A DC 4 ? ? C2    A DC 4 ? ? O2    A DC 4 ? ? 122.92 118.90 4.02   0.60 N 
28 1 N3    A DC 4 ? ? C2    A DC 4 ? ? O2    A DC 4 ? ? 117.68 121.90 -4.22  0.70 N 
29 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 100.36 109.40 -9.04  0.80 N 
30 1 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 96.52  102.40 -5.88  0.80 N 
31 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 95.76  105.90 -10.14 0.80 N 
32 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1    A DC 5 ? ? 123.71 108.30 15.41  0.30 N 
33 1 N1    A DC 5 ? ? C2    A DC 5 ? ? O2    A DC 5 ? ? 124.90 118.90 6.00   0.60 N 
34 1 "O3'" A DC 5 ? ? P     A DG 6 ? ? "O5'" A DG 6 ? ? 91.90  104.00 -12.10 1.90 Y 
35 1 "O5'" A DG 6 ? ? P     A DG 6 ? ? OP2   A DG 6 ? ? 118.97 110.70 8.27   1.20 N 
36 1 "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 93.85  109.40 -15.55 0.80 N 
37 1 N1    A DG 6 ? ? C6    A DG 6 ? ? O6    A DG 6 ? ? 116.26 119.90 -3.64  0.60 N 
# 
_struct_site_keywords.site_id   1 
_struct_site_keywords.text      INTERCALATION 
# 
loop_
_refine_B_iso.class 
_refine_B_iso.details 
_refine_B_iso.treatment 
_refine_B_iso.pdbx_refine_id 
'ALL ATOMS'  TR isotropic 'X-RAY DIFFRACTION' 
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' 
# 
loop_
_refine_occupancy.class 
_refine_occupancy.treatment 
_refine_occupancy.pdbx_refine_id 
'ALL ATOMS'  fix 'X-RAY DIFFRACTION' 
'ALL WATERS' fix 'X-RAY DIFFRACTION' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DC  OP3    O N N 1   
DC  P      P N N 2   
DC  OP1    O N N 3   
DC  OP2    O N N 4   
DC  "O5'"  O N N 5   
DC  "C5'"  C N N 6   
DC  "C4'"  C N R 7   
DC  "O4'"  O N N 8   
DC  "C3'"  C N S 9   
DC  "O3'"  O N N 10  
DC  "C2'"  C N N 11  
DC  "C1'"  C N R 12  
DC  N1     N N N 13  
DC  C2     C N N 14  
DC  O2     O N N 15  
DC  N3     N N N 16  
DC  C4     C N N 17  
DC  N4     N N N 18  
DC  C5     C N N 19  
DC  C6     C N N 20  
DC  HOP3   H N N 21  
DC  HOP2   H N N 22  
DC  "H5'"  H N N 23  
DC  "H5''" H N N 24  
DC  "H4'"  H N N 25  
DC  "H3'"  H N N 26  
DC  "HO3'" H N N 27  
DC  "H2'"  H N N 28  
DC  "H2''" H N N 29  
DC  "H1'"  H N N 30  
DC  H41    H N N 31  
DC  H42    H N N 32  
DC  H5     H N N 33  
DC  H6     H N N 34  
DG  OP3    O N N 35  
DG  P      P N N 36  
DG  OP1    O N N 37  
DG  OP2    O N N 38  
DG  "O5'"  O N N 39  
DG  "C5'"  C N N 40  
DG  "C4'"  C N R 41  
DG  "O4'"  O N N 42  
DG  "C3'"  C N S 43  
DG  "O3'"  O N N 44  
DG  "C2'"  C N N 45  
DG  "C1'"  C N R 46  
DG  N9     N Y N 47  
DG  C8     C Y N 48  
DG  N7     N Y N 49  
DG  C5     C Y N 50  
DG  C6     C N N 51  
DG  O6     O N N 52  
DG  N1     N N N 53  
DG  C2     C N N 54  
DG  N2     N N N 55  
DG  N3     N N N 56  
DG  C4     C Y N 57  
DG  HOP3   H N N 58  
DG  HOP2   H N N 59  
DG  "H5'"  H N N 60  
DG  "H5''" H N N 61  
DG  "H4'"  H N N 62  
DG  "H3'"  H N N 63  
DG  "HO3'" H N N 64  
DG  "H2'"  H N N 65  
DG  "H2''" H N N 66  
DG  "H1'"  H N N 67  
DG  H8     H N N 68  
DG  H1     H N N 69  
DG  H21    H N N 70  
DG  H22    H N N 71  
DM1 C1     C Y N 72  
DM1 C2     C Y N 73  
DM1 C3     C Y N 74  
DM1 C4     C Y N 75  
DM1 O4     O N N 76  
DM1 C5     C Y N 77  
DM1 C6     C N N 78  
DM1 O6     O N N 79  
DM1 C7     C Y N 80  
DM1 C8     C Y N 81  
DM1 O8     O N N 82  
DM1 C9     C Y N 83  
DM1 C10    C N S 84  
DM1 O10    O N N 85  
DM1 C11    C N N 86  
DM1 C12    C N S 87  
DM1 O12    O N N 88  
DM1 C13    C N N 89  
DM1 O13    O N N 90  
DM1 C14    C N N 91  
DM1 C15    C N N 92  
DM1 C16    C Y N 93  
DM1 C17    C Y N 94  
DM1 O17    O N N 95  
DM1 C18    C Y N 96  
DM1 C19    C N N 97  
DM1 O19    O N N 98  
DM1 C20    C Y N 99  
DM1 C21    C N N 100 
DM1 "C1'"  C N R 101 
DM1 "C2'"  C N N 102 
DM1 "C3'"  C N S 103 
DM1 "N3'"  N N N 104 
DM1 "C4'"  C N S 105 
DM1 "O4'"  O N N 106 
DM1 "C5'"  C N S 107 
DM1 "O5'"  O N N 108 
DM1 "C6'"  C N N 109 
DM1 H1     H N N 110 
DM1 H2     H N N 111 
DM1 H3     H N N 112 
DM1 HO8    H N N 113 
DM1 H10    H N N 114 
DM1 H111   H N N 115 
DM1 H112   H N N 116 
DM1 HO12   H N N 117 
DM1 H141   H N N 118 
DM1 H142   H N N 119 
DM1 H143   H N N 120 
DM1 H151   H N N 121 
DM1 H152   H N N 122 
DM1 HO17   H N N 123 
DM1 H211   H N N 124 
DM1 H212   H N N 125 
DM1 H213   H N N 126 
DM1 "H1'"  H N N 127 
DM1 "H2'1" H N N 128 
DM1 "H2'2" H N N 129 
DM1 "H3'"  H N N 130 
DM1 "HN'1" H N N 131 
DM1 "HN'2" H N N 132 
DM1 "H4'"  H N N 133 
DM1 "HO4'" H N N 134 
DM1 "H5'"  H N N 135 
DM1 "H6'1" H N N 136 
DM1 "H6'2" H N N 137 
DM1 "H6'3" H N N 138 
HOH O      O N N 139 
HOH H1     H N N 140 
HOH H2     H N N 141 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DC  OP3   P      sing N N 1   
DC  OP3   HOP3   sing N N 2   
DC  P     OP1    doub N N 3   
DC  P     OP2    sing N N 4   
DC  P     "O5'"  sing N N 5   
DC  OP2   HOP2   sing N N 6   
DC  "O5'" "C5'"  sing N N 7   
DC  "C5'" "C4'"  sing N N 8   
DC  "C5'" "H5'"  sing N N 9   
DC  "C5'" "H5''" sing N N 10  
DC  "C4'" "O4'"  sing N N 11  
DC  "C4'" "C3'"  sing N N 12  
DC  "C4'" "H4'"  sing N N 13  
DC  "O4'" "C1'"  sing N N 14  
DC  "C3'" "O3'"  sing N N 15  
DC  "C3'" "C2'"  sing N N 16  
DC  "C3'" "H3'"  sing N N 17  
DC  "O3'" "HO3'" sing N N 18  
DC  "C2'" "C1'"  sing N N 19  
DC  "C2'" "H2'"  sing N N 20  
DC  "C2'" "H2''" sing N N 21  
DC  "C1'" N1     sing N N 22  
DC  "C1'" "H1'"  sing N N 23  
DC  N1    C2     sing N N 24  
DC  N1    C6     sing N N 25  
DC  C2    O2     doub N N 26  
DC  C2    N3     sing N N 27  
DC  N3    C4     doub N N 28  
DC  C4    N4     sing N N 29  
DC  C4    C5     sing N N 30  
DC  N4    H41    sing N N 31  
DC  N4    H42    sing N N 32  
DC  C5    C6     doub N N 33  
DC  C5    H5     sing N N 34  
DC  C6    H6     sing N N 35  
DG  OP3   P      sing N N 36  
DG  OP3   HOP3   sing N N 37  
DG  P     OP1    doub N N 38  
DG  P     OP2    sing N N 39  
DG  P     "O5'"  sing N N 40  
DG  OP2   HOP2   sing N N 41  
DG  "O5'" "C5'"  sing N N 42  
DG  "C5'" "C4'"  sing N N 43  
DG  "C5'" "H5'"  sing N N 44  
DG  "C5'" "H5''" sing N N 45  
DG  "C4'" "O4'"  sing N N 46  
DG  "C4'" "C3'"  sing N N 47  
DG  "C4'" "H4'"  sing N N 48  
DG  "O4'" "C1'"  sing N N 49  
DG  "C3'" "O3'"  sing N N 50  
DG  "C3'" "C2'"  sing N N 51  
DG  "C3'" "H3'"  sing N N 52  
DG  "O3'" "HO3'" sing N N 53  
DG  "C2'" "C1'"  sing N N 54  
DG  "C2'" "H2'"  sing N N 55  
DG  "C2'" "H2''" sing N N 56  
DG  "C1'" N9     sing N N 57  
DG  "C1'" "H1'"  sing N N 58  
DG  N9    C8     sing Y N 59  
DG  N9    C4     sing Y N 60  
DG  C8    N7     doub Y N 61  
DG  C8    H8     sing N N 62  
DG  N7    C5     sing Y N 63  
DG  C5    C6     sing N N 64  
DG  C5    C4     doub Y N 65  
DG  C6    O6     doub N N 66  
DG  C6    N1     sing N N 67  
DG  N1    C2     sing N N 68  
DG  N1    H1     sing N N 69  
DG  C2    N2     sing N N 70  
DG  C2    N3     doub N N 71  
DG  N2    H21    sing N N 72  
DG  N2    H22    sing N N 73  
DG  N3    C4     sing N N 74  
DM1 C1    C2     doub Y N 75  
DM1 C1    C20    sing Y N 76  
DM1 C1    H1     sing N N 77  
DM1 C2    C3     sing Y N 78  
DM1 C2    H2     sing N N 79  
DM1 C3    C4     doub Y N 80  
DM1 C3    H3     sing N N 81  
DM1 C4    O4     sing N N 82  
DM1 C4    C5     sing Y N 83  
DM1 O4    C21    sing N N 84  
DM1 C5    C6     sing N N 85  
DM1 C5    C20    doub Y N 86  
DM1 C6    O6     doub N N 87  
DM1 C6    C7     sing N N 88  
DM1 C7    C8     doub Y N 89  
DM1 C7    C18    sing Y N 90  
DM1 C8    O8     sing N N 91  
DM1 C8    C9     sing Y N 92  
DM1 O8    HO8    sing N N 93  
DM1 C9    C10    sing N N 94  
DM1 C9    C16    doub Y N 95  
DM1 C10   O10    sing N N 96  
DM1 C10   C11    sing N N 97  
DM1 C10   H10    sing N N 98  
DM1 O10   "C1'"  sing N N 99  
DM1 C11   C12    sing N N 100 
DM1 C11   H111   sing N N 101 
DM1 C11   H112   sing N N 102 
DM1 C12   O12    sing N N 103 
DM1 C12   C13    sing N N 104 
DM1 C12   C15    sing N N 105 
DM1 O12   HO12   sing N N 106 
DM1 C13   O13    doub N N 107 
DM1 C13   C14    sing N N 108 
DM1 C14   H141   sing N N 109 
DM1 C14   H142   sing N N 110 
DM1 C14   H143   sing N N 111 
DM1 C15   C16    sing N N 112 
DM1 C15   H151   sing N N 113 
DM1 C15   H152   sing N N 114 
DM1 C16   C17    sing Y N 115 
DM1 C17   O17    sing N N 116 
DM1 C17   C18    doub Y N 117 
DM1 O17   HO17   sing N N 118 
DM1 C18   C19    sing N N 119 
DM1 C19   O19    doub N N 120 
DM1 C19   C20    sing N N 121 
DM1 C21   H211   sing N N 122 
DM1 C21   H212   sing N N 123 
DM1 C21   H213   sing N N 124 
DM1 "C1'" "C2'"  sing N N 125 
DM1 "C1'" "O5'"  sing N N 126 
DM1 "C1'" "H1'"  sing N N 127 
DM1 "C2'" "C3'"  sing N N 128 
DM1 "C2'" "H2'1" sing N N 129 
DM1 "C2'" "H2'2" sing N N 130 
DM1 "C3'" "N3'"  sing N N 131 
DM1 "C3'" "C4'"  sing N N 132 
DM1 "C3'" "H3'"  sing N N 133 
DM1 "N3'" "HN'1" sing N N 134 
DM1 "N3'" "HN'2" sing N N 135 
DM1 "C4'" "O4'"  sing N N 136 
DM1 "C4'" "C5'"  sing N N 137 
DM1 "C4'" "H4'"  sing N N 138 
DM1 "O4'" "HO4'" sing N N 139 
DM1 "C5'" "O5'"  sing N N 140 
DM1 "C5'" "C6'"  sing N N 141 
DM1 "C5'" "H5'"  sing N N 142 
DM1 "C6'" "H6'1" sing N N 143 
DM1 "C6'" "H6'2" sing N N 144 
DM1 "C6'" "H6'3" sing N N 145 
HOH O     H1     sing N N 146 
HOH O     H2     sing N N 147 
# 
_ndb_struct_conf_na.entry_id   110D 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1 1_555 A DG 6 8_555 0.550  -0.539 0.053  7.831   1.780  -1.018 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1 
1 A DG 2 1_555 A DC 5 8_555 0.089  -0.451 -0.096 -12.660 7.121  -4.939 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1 
1 A DG 3 1_555 A DC 4 8_555 -0.390 -0.215 0.216  0.023   -6.976 -4.039 3 A_DG3:DC4_A A 3 ? A 4 ? 19 1 
1 A DC 4 1_555 A DG 3 8_555 0.390  -0.215 0.216  -0.023  -6.976 -4.039 4 A_DC4:DG3_A A 4 ? A 3 ? 19 1 
1 A DC 5 1_555 A DG 2 8_555 -0.089 -0.451 -0.096 12.660  7.121  -4.939 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1 
1 A DG 6 1_555 A DC 1 8_555 -0.550 -0.539 0.053  -7.831  1.780  -1.018 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1 1_555 A DG 6 8_555 A DG 2 1_555 A DC 5 8_555 0.724  0.929  7.018 0.380  -1.941 34.532 2.203  -1.092 6.965 -3.267 -0.639  
34.587 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ? 
1 A DG 2 1_555 A DC 5 8_555 A DG 3 1_555 A DC 4 8_555 -1.478 0.811  3.072 -5.184 5.443  24.553 0.269  1.846  3.405 12.431 11.841  
25.660 2 AA_DG2DG3:DC4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 
1 A DG 3 1_555 A DC 4 8_555 A DC 4 1_555 A DG 3 8_555 0.000  -0.255 3.476 0.000  -2.985 39.321 -0.002 0.000  3.485 -4.428 0.000   
39.430 3 AA_DG3DC4:DG3DC4_AA A 3 ? A 4 ? A 4 ? A 3 ? 
1 A DC 4 1_555 A DG 3 8_555 A DC 5 1_555 A DG 2 8_555 1.478  0.811  3.072 5.184  5.443  24.553 0.269  -1.846 3.405 12.431 -11.841 
25.660 4 AA_DC4DC5:DG2DG3_AA A 4 ? A 3 ? A 5 ? A 2 ? 
1 A DC 5 1_555 A DG 2 8_555 A DG 6 1_555 A DC 1 8_555 -0.724 0.929  7.018 -0.380 -1.941 34.532 2.203  1.092  6.965 -3.267 0.639   
34.587 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? 
# 
_atom_sites.entry_id                    110D 
_atom_sites.fract_transf_matrix[1][1]   0.035625 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.035620 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.018744 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_