data_11BK # _entry.id 11BK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.414 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 11BK pdb_000011bk 10.2210/pdb11bk/pdb WWPDB D_1000305229 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-05-27 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 11BK _pdbx_database_status.recvd_initial_deposition_date 2026-02-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_contact_author.id 2 _pdbx_contact_author.email ovts222@uky.edu _pdbx_contact_author.name_first Oleg _pdbx_contact_author.name_last Tsodikov _pdbx_contact_author.name_mi V. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7094-4216 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hou, C.' 1 ? 'Tsodikov, O.V.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Mol.Biol. _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first 169866 _citation.page_last 169866 _citation.title 'Crystal Structure of Trabectedin-DNA Complex.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2026.169866 _citation.pdbx_database_id_PubMed 42155620 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hou, C.' 1 ? primary 'Chandrika, N.T.' 2 ? primary 'Leggas, M.' 3 ? primary 'Garneau-Tsodikova, S.' 4 ? primary 'Tsodikov, O.V.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '12-mer double-stranded DNA' 3646.402 2 ? ? ? 'The DNA contains an inosine base. The trabectedin adducts are covalent, to N2 of two guanine bases (one on each strand).' 2 non-polymer syn ;[(6aS,7R,13S,14S,15S,16R)-5-(acetyloxy)-8,14-dihydroxy-9-methoxy-4,10,17-trimethyl-6,7,12,13,14,16-hexahydro-2H,6aH-7,13-epimino[1,3]dioxolo[7,8]isoquinolino[3,2-b][3]benzazocin-16-yl]methyl (1R)-6-hydroxy-7-methoxy-1-(sulfanylmethyl)-1,2,3,4-tetrahydroisoquinoline-1-carboxylate ; 763.853 2 ? ? ? ? 3 water nat water 18.015 49 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DT)(DA)(DG)(DC)(DT)(DA)(DI)(DC)(DT)(DA)(DT)' _entity_poly.pdbx_seq_one_letter_code_can ATAGCTAICTAT _entity_poly.pdbx_strand_id E,F _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;[(6aS,7R,13S,14S,15S,16R)-5-(acetyloxy)-8,14-dihydroxy-9-methoxy-4,10,17-trimethyl-6,7,12,13,14,16-hexahydro-2H,6aH-7,13-epimino[1,3]dioxolo[7,8]isoquinolino[3,2-b][3]benzazocin-16-yl]methyl (1R)-6-hydroxy-7-methoxy-1-(sulfanylmethyl)-1,2,3,4-tetrahydroisoquinoline-1-carboxylate ; A1DET 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DT n 1 3 DA n 1 4 DG n 1 5 DC n 1 6 DT n 1 7 DA n 1 8 DI n 1 9 DC n 1 10 DT n 1 11 DA n 1 12 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1DET non-polymer . ;[(6aS,7R,13S,14S,15S,16R)-5-(acetyloxy)-8,14-dihydroxy-9-methoxy-4,10,17-trimethyl-6,7,12,13,14,16-hexahydro-2H,6aH-7,13-epimino[1,3]dioxolo[7,8]isoquinolino[3,2-b][3]benzazocin-16-yl]methyl (1R)-6-hydroxy-7-methoxy-1-(sulfanylmethyl)-1,2,3,4-tetrahydroisoquinoline-1-carboxylate ; 'radiolytically cleaved trabectedin' 'C39 H45 N3 O11 S' 763.853 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DI 'DNA linking' y "2'-DEOXYINOSINE-5'-MONOPHOSPHATE" ? 'C10 H13 N4 O7 P' 332.207 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 -2 -2 DA DA E . n A 1 2 DT 2 -1 -1 DT DT E . n A 1 3 DA 3 0 0 DA DA E . n A 1 4 DG 4 1 1 DG DG E . n A 1 5 DC 5 2 2 DC DC E . n A 1 6 DT 6 3 3 DT DT E . n A 1 7 DA 7 4 4 DA DA E . n A 1 8 DI 8 5 5 DI DI E . n A 1 9 DC 9 6 6 DC DC E . n A 1 10 DT 10 7 7 DT DT E . n A 1 11 DA 11 8 8 DA DA E . n A 1 12 DT 12 9 9 DT DT E . n B 1 1 DA 1 8 8 DA DA F . n B 1 2 DT 2 9 9 DT DT F . n B 1 3 DA 3 10 10 DA DA F . n B 1 4 DG 4 11 11 DG DG F . n B 1 5 DC 5 12 12 DC DC F . n B 1 6 DT 6 13 13 DT DT F . n B 1 7 DA 7 14 14 DA DA F . n B 1 8 DI 8 15 15 DI DI F . n B 1 9 DC 9 16 16 DC DC F . n B 1 10 DT 10 17 17 DT DT F . n B 1 11 DA 11 18 18 DA DA F . n B 1 12 DT 12 19 19 DT DT F . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1DET _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1DET _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1DET 1 101 1 A1DET EC1 E . D 2 A1DET 1 101 1 A1DET EC1 F . E 3 HOH 1 201 73 HOH HOH E . E 3 HOH 2 202 80 HOH HOH E . E 3 HOH 3 203 58 HOH HOH E . E 3 HOH 4 204 77 HOH HOH E . E 3 HOH 5 205 19 HOH HOH E . E 3 HOH 6 206 4 HOH HOH E . E 3 HOH 7 207 26 HOH HOH E . E 3 HOH 8 208 46 HOH HOH E . E 3 HOH 9 209 11 HOH HOH E . E 3 HOH 10 210 6 HOH HOH E . E 3 HOH 11 211 25 HOH HOH E . E 3 HOH 12 212 33 HOH HOH E . E 3 HOH 13 213 45 HOH HOH E . E 3 HOH 14 214 50 HOH HOH E . E 3 HOH 15 215 48 HOH HOH E . E 3 HOH 16 216 21 HOH HOH E . E 3 HOH 17 217 20 HOH HOH E . E 3 HOH 18 218 8 HOH HOH E . E 3 HOH 19 219 3 HOH HOH E . F 3 HOH 1 201 2 HOH HOH F . F 3 HOH 2 202 67 HOH HOH F . F 3 HOH 3 203 23 HOH HOH F . F 3 HOH 4 204 35 HOH HOH F . F 3 HOH 5 205 39 HOH HOH F . F 3 HOH 6 206 79 HOH HOH F . F 3 HOH 7 207 71 HOH HOH F . F 3 HOH 8 208 57 HOH HOH F . F 3 HOH 9 209 75 HOH HOH F . F 3 HOH 10 210 78 HOH HOH F . F 3 HOH 11 211 68 HOH HOH F . F 3 HOH 12 212 14 HOH HOH F . F 3 HOH 13 213 72 HOH HOH F . F 3 HOH 14 214 74 HOH HOH F . F 3 HOH 15 215 76 HOH HOH F . F 3 HOH 16 216 66 HOH HOH F . F 3 HOH 17 217 69 HOH HOH F . F 3 HOH 18 218 32 HOH HOH F . F 3 HOH 19 219 36 HOH HOH F . F 3 HOH 20 220 64 HOH HOH F . F 3 HOH 21 221 34 HOH HOH F . F 3 HOH 22 222 65 HOH HOH F . F 3 HOH 23 223 40 HOH HOH F . F 3 HOH 24 224 7 HOH HOH F . F 3 HOH 25 225 10 HOH HOH F . F 3 HOH 26 226 70 HOH HOH F . F 3 HOH 27 227 9 HOH HOH F . F 3 HOH 28 228 13 HOH HOH F . F 3 HOH 29 229 41 HOH HOH F . F 3 HOH 30 230 63 HOH HOH F . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 ? 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . ? 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . ? 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . ? 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . ? 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 11BK _cell.details ? _cell.formula_units_Z ? _cell.length_a 39.250 _cell.length_a_esd ? _cell.length_b 47.178 _cell.length_b_esd ? _cell.length_c 51.733 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 11BK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 11BK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.28 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Drop: 10 mM Tris pH 7.5, 5 mM MgCl2, and 2 mM spermine hydrochloride. Reservoir: 19% v/v 2-methyl-2,4-pentanediol in water' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 294 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2024-11-02 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9786 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9786 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 11BK _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.8 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8933 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 1.6 _reflns.percent_possible_obs 95.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.9 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 40 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.83 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 325 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.861 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -2.65 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] -0.93 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 3.58 _refine.B_iso_max ? _refine.B_iso_mean 39.874 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.962 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 11BK _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.80 _refine.ls_d_res_low 34.00 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8519 _refine.ls_number_reflns_R_free 382 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.38 _refine.ls_percent_reflns_R_free 4.3 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.22013 _refine.ls_R_factor_R_free 0.24841 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.21886 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.134 _refine.pdbx_overall_ESU_R_Free 0.127 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 3.950 _refine.overall_SU_ML 0.116 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 34.00 _refine_hist.number_atoms_solvent 49 _refine_hist.number_atoms_total 643 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 488 _refine_hist.pdbx_number_atoms_ligand 106 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 0.012 668 ? r_bond_refined_d ? ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 350 ? r_bond_other_d ? ? ? 'X-RAY DIFFRACTION' ? 2.060 1.513 1023 ? r_angle_refined_deg ? ? ? 'X-RAY DIFFRACTION' ? 1.612 3.000 828 ? r_angle_other_deg ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? ? 'X-RAY DIFFRACTION' ? 0.087 0.200 86 ? r_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.018 0.020 360 ? r_gen_planes_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 110 ? r_gen_planes_other ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? ? 'X-RAY DIFFRACTION' ? 3.946 4.078 668 ? r_scbond_it ? ? ? 'X-RAY DIFFRACTION' ? 3.944 4.077 669 ? r_scbond_other ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? ? 'X-RAY DIFFRACTION' ? 5.770 6.111 1024 ? r_scangle_other ? ? ? 'X-RAY DIFFRACTION' ? 7.241 38.481 1007 ? r_long_range_B_refined ? ? ? 'X-RAY DIFFRACTION' ? 7.235 38.324 1002 ? r_long_range_B_other ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.801 _refine_ls_shell.d_res_low 1.848 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.number_reflns_R_work 456 _refine_ls_shell.percent_reflns_obs 71.75 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.284 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.correlation_coeff_Fo_to_Fc ? _refine_ls_shell.correlation_coeff_Fo_to_Fc_free ? _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work ? _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.292 # _struct.entry_id 11BK _struct.title 'Crystal structure of radiolytically cleaved trabectedin-DNA complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 11BK _struct_keywords.text 'DNA, Anticancer, Drug, TC-NER, XPG inhibitor, DNA repair' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 11BK _struct_ref.pdbx_db_accession 11BK _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 11BK E 1 ? 12 ? 11BK -2 ? 9 ? -2 9 2 1 11BK F 1 ? 12 ? 11BK 8 ? 19 ? 8 19 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2650 ? 1 MORE 6 ? 1 'SSA (A^2)' 4520 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A DG 4 N2 ? ? ? 1_555 C A1DET . C40 ? ? E DG 1 E A1DET 101 1_555 ? ? ? ? ? ? ? 1.469 ? ? covale2 covale one ? B DG 4 N2 ? ? ? 1_555 D A1DET . C40 ? ? F DG 11 F A1DET 101 1_555 ? ? ? ? ? ? ? 1.496 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 12 N3 ? ? E DA -2 F DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 12 O4 ? ? E DA -2 F DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 11 N1 ? ? E DT -1 F DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 11 N6 ? ? E DT -1 F DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 10 N3 ? ? E DA 0 F DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 10 O4 ? ? E DA 0 F DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? E DG 1 F DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? E DG 1 F DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? E DG 1 F DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DI 8 N1 ? ? E DC 2 F DI 15 1_555 ? ? ? ? ? ? TYPE_29_PAIR ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DI 8 O6 ? ? E DC 2 F DI 15 1_555 ? ? ? ? ? ? TYPE_29_PAIR ? ? ? hydrog12 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 7 N1 ? ? E DT 3 F DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 7 N6 ? ? E DT 3 F DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 6 N3 ? ? E DA 4 F DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 6 O4 ? ? E DA 4 F DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DI 8 N1 ? ? ? 1_555 B DC 5 N3 ? ? E DI 5 F DC 12 1_555 ? ? ? ? ? ? TYPE_29_PAIR ? ? ? hydrog17 hydrog ? ? A DI 8 O6 ? ? ? 1_555 B DC 5 N4 ? ? E DI 5 F DC 12 1_555 ? ? ? ? ? ? TYPE_29_PAIR ? ? ? hydrog18 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? E DC 6 F DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? E DC 6 F DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? E DC 6 F DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 3 N1 ? ? E DT 7 F DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 3 N6 ? ? E DT 7 F DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 2 N3 ? ? E DA 8 F DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 2 O4 ? ? E DA 8 F DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 1 N1 ? ? E DT 9 F DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 1 N6 ? ? E DT 9 F DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_entry_details.entry_id 11BK _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1DET C16 C N N 1 A1DET O48 O N N 2 A1DET C1 C N N 3 A1DET C2 C N R 4 A1DET C3 C Y N 5 A1DET C4 C Y N 6 A1DET O5 O N N 7 A1DET C6 C N N 8 A1DET O7 O N N 9 A1DET C8 C Y N 10 A1DET C9 C Y N 11 A1DET C10 C N N 12 A1DET C14 C Y N 13 A1DET O15 O N N 14 A1DET O17 O N N 15 A1DET C18 C N N 16 A1DET C19 C Y N 17 A1DET C20 C N N 18 A1DET C21 C N S 19 A1DET N22 N N N 20 A1DET S S N N 21 A1DET C23 C N N 22 A1DET C24 C N R 23 A1DET C25 C N N 24 A1DET O26 O N N 25 A1DET O27 O N N 26 A1DET C28 C Y N 27 A1DET C29 C Y N 28 A1DET C30 C Y N 29 A1DET O31 O N N 30 A1DET C32 C N N 31 A1DET C33 C Y N 32 A1DET O34 O N N 33 A1DET C35 C Y N 34 A1DET C36 C Y N 35 A1DET C37 C N N 36 A1DET C38 C N N 37 A1DET N39 N N N 38 A1DET C40 C N S 39 A1DET C41 C N S 40 A1DET N42 N N N 41 A1DET C43 C N N 42 A1DET C44 C N R 43 A1DET C45 C Y N 44 A1DET C46 C Y N 45 A1DET O47 O N N 46 A1DET C47 C Y N 47 A1DET C49 C N N 48 A1DET C50 C Y N 49 A1DET C51 C N N 50 A1DET C52 C Y N 51 A1DET C53 C Y N 52 A1DET C54 C N N 53 A1DET H11A H N N 54 A1DET H12A H N N 55 A1DET H2 H N N 56 A1DET H62 H N N 57 A1DET H61 H N N 58 A1DET H13 H N N 59 A1DET H12 H N N 60 A1DET H11 H N N 61 A1DET H181 H N N 62 A1DET H182 H N N 63 A1DET H183 H N N 64 A1DET H20 H N N 65 A1DET H20A H N N 66 A1DET H21 H N N 67 A1DET H1 H N N 68 A1DET H232 H N N 69 A1DET H231 H N N 70 A1DET H29 H N N 71 A1DET H321 H N N 72 A1DET H322 H N N 73 A1DET H323 H N N 74 A1DET H34 H N N 75 A1DET H35 H N N 76 A1DET H371 H N N 77 A1DET H372 H N N 78 A1DET H381 H N N 79 A1DET H382 H N N 80 A1DET H39 H N N 81 A1DET O40 O N N 82 A1DET H40 H N N 83 A1DET H41 H N N 84 A1DET H432 H N N 85 A1DET H433 H N N 86 A1DET H431 H N N 87 A1DET H44 H N N 88 A1DET H47 H N N 89 A1DET H491 H N N 90 A1DET H492 H N N 91 A1DET H493 H N N 92 A1DET H512 H N N 93 A1DET H511 H N N 94 A1DET H513 H N N 95 A1DET H52 H N N 96 A1DET H542 H N N 97 A1DET H541 H N N 98 A1DET H42 H N N 99 DA OP3 O N N 100 DA P P N N 101 DA OP1 O N N 102 DA OP2 O N N 103 DA "O5'" O N N 104 DA "C5'" C N N 105 DA "C4'" C N R 106 DA "O4'" O N N 107 DA "C3'" C N S 108 DA "O3'" O N N 109 DA "C2'" C N N 110 DA "C1'" C N R 111 DA N9 N Y N 112 DA C8 C Y N 113 DA N7 N Y N 114 DA C5 C Y N 115 DA C6 C Y N 116 DA N6 N N N 117 DA N1 N Y N 118 DA C2 C Y N 119 DA N3 N Y N 120 DA C4 C Y N 121 DA HOP3 H N N 122 DA HOP2 H N N 123 DA "H5'" H N N 124 DA "H5''" H N N 125 DA "H4'" H N N 126 DA "H3'" H N N 127 DA "HO3'" H N N 128 DA "H2'" H N N 129 DA "H2''" H N N 130 DA "H1'" H N N 131 DA H8 H N N 132 DA H61 H N N 133 DA H62 H N N 134 DA H2 H N N 135 DC OP3 O N N 136 DC P P N N 137 DC OP1 O N N 138 DC OP2 O N N 139 DC "O5'" O N N 140 DC "C5'" C N N 141 DC "C4'" C N R 142 DC "O4'" O N N 143 DC "C3'" C N S 144 DC "O3'" O N N 145 DC "C2'" C N N 146 DC "C1'" C N R 147 DC N1 N N N 148 DC C2 C N N 149 DC O2 O N N 150 DC N3 N N N 151 DC C4 C N N 152 DC N4 N N N 153 DC C5 C N N 154 DC C6 C N N 155 DC HOP3 H N N 156 DC HOP2 H N N 157 DC "H5'" H N N 158 DC "H5''" H N N 159 DC "H4'" H N N 160 DC "H3'" H N N 161 DC "HO3'" H N N 162 DC "H2'" H N N 163 DC "H2''" H N N 164 DC "H1'" H N N 165 DC H41 H N N 166 DC H42 H N N 167 DC H5 H N N 168 DC H6 H N N 169 DG OP3 O N N 170 DG P P N N 171 DG OP1 O N N 172 DG OP2 O N N 173 DG "O5'" O N N 174 DG "C5'" C N N 175 DG "C4'" C N R 176 DG "O4'" O N N 177 DG "C3'" C N S 178 DG "O3'" O N N 179 DG "C2'" C N N 180 DG "C1'" C N R 181 DG N9 N Y N 182 DG C8 C Y N 183 DG N7 N Y N 184 DG C5 C Y N 185 DG C6 C N N 186 DG O6 O N N 187 DG N1 N N N 188 DG C2 C N N 189 DG N2 N N N 190 DG N3 N N N 191 DG C4 C Y N 192 DG HOP3 H N N 193 DG HOP2 H N N 194 DG "H5'" H N N 195 DG "H5''" H N N 196 DG "H4'" H N N 197 DG "H3'" H N N 198 DG "HO3'" H N N 199 DG "H2'" H N N 200 DG "H2''" H N N 201 DG "H1'" H N N 202 DG H8 H N N 203 DG H1 H N N 204 DG H21 H N N 205 DG H22 H N N 206 DI OP3 O N N 207 DI P P N N 208 DI OP1 O N N 209 DI OP2 O N N 210 DI "O5'" O N N 211 DI "C5'" C N N 212 DI "C4'" C N R 213 DI "O4'" O N N 214 DI "C3'" C N S 215 DI "O3'" O N N 216 DI "C2'" C N N 217 DI "C1'" C N R 218 DI N9 N Y N 219 DI C8 C Y N 220 DI N7 N Y N 221 DI C5 C Y N 222 DI C6 C N N 223 DI O6 O N N 224 DI N1 N N N 225 DI C2 C N N 226 DI N3 N N N 227 DI C4 C Y N 228 DI HOP3 H N N 229 DI HOP2 H N N 230 DI "H5'" H N N 231 DI "H5''" H N N 232 DI "H4'" H N N 233 DI "H3'" H N N 234 DI "HO3'" H N N 235 DI "H2'" H N N 236 DI "H2''" H N N 237 DI "H1'" H N N 238 DI H8 H N N 239 DI H1 H N N 240 DI H2 H N N 241 DT OP3 O N N 242 DT P P N N 243 DT OP1 O N N 244 DT OP2 O N N 245 DT "O5'" O N N 246 DT "C5'" C N N 247 DT "C4'" C N R 248 DT "O4'" O N N 249 DT "C3'" C N S 250 DT "O3'" O N N 251 DT "C2'" C N N 252 DT "C1'" C N R 253 DT N1 N N N 254 DT C2 C N N 255 DT O2 O N N 256 DT N3 N N N 257 DT C4 C N N 258 DT O4 O N N 259 DT C5 C N N 260 DT C7 C N N 261 DT C6 C N N 262 DT HOP3 H N N 263 DT HOP2 H N N 264 DT "H5'" H N N 265 DT "H5''" H N N 266 DT "H4'" H N N 267 DT "H3'" H N N 268 DT "HO3'" H N N 269 DT "H2'" H N N 270 DT "H2''" H N N 271 DT "H1'" H N N 272 DT H3 H N N 273 DT H71 H N N 274 DT H72 H N N 275 DT H73 H N N 276 DT H6 H N N 277 HOH O O N N 278 HOH H1 H N N 279 HOH H2 H N N 280 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1DET C51 C50 sing N N 1 A1DET C52 C50 doub Y N 2 A1DET C52 C53 sing Y N 3 A1DET C54 C53 sing N N 4 A1DET C54 C41 sing N N 5 A1DET C50 C47 sing Y N 6 A1DET C38 N39 sing N N 7 A1DET C38 C37 sing N N 8 A1DET C53 C45 doub Y N 9 A1DET C43 N42 sing N N 10 A1DET C41 N42 sing N N 11 A1DET C41 C40 sing N N 12 A1DET O26 C25 doub N N 13 A1DET N39 C24 sing N N 14 A1DET C37 C36 sing N N 15 A1DET C47 O48 sing N N 16 A1DET C47 C46 doub Y N 17 A1DET O48 C49 sing N N 18 A1DET N42 C44 sing N N 19 A1DET C45 C46 sing Y N 20 A1DET C45 C44 sing N N 21 A1DET C40 N22 sing N N 22 A1DET C25 C24 sing N N 23 A1DET C25 O27 sing N N 24 A1DET C46 O47 sing N N 25 A1DET C24 C23 sing N N 26 A1DET C24 C28 sing N N 27 A1DET C36 C28 doub Y N 28 A1DET C36 C35 sing Y N 29 A1DET C44 C21 sing N N 30 A1DET N22 C21 sing N N 31 A1DET N22 C2 sing N N 32 A1DET C1 O27 sing N N 33 A1DET C1 C2 sing N N 34 A1DET C23 S sing N N 35 A1DET C28 C29 sing Y N 36 A1DET C35 C33 doub Y N 37 A1DET C21 C20 sing N N 38 A1DET C2 C3 sing N N 39 A1DET C29 C30 doub Y N 40 A1DET C20 C19 sing N N 41 A1DET C33 C30 sing Y N 42 A1DET C33 O34 sing N N 43 A1DET C3 C19 doub Y N 44 A1DET C3 C4 sing Y N 45 A1DET C30 O31 sing N N 46 A1DET C19 C14 sing Y N 47 A1DET O5 C4 sing N N 48 A1DET O5 C6 sing N N 49 A1DET C4 C8 doub Y N 50 A1DET O31 C32 sing N N 51 A1DET C18 C16 sing N N 52 A1DET C14 O15 sing N N 53 A1DET C14 C9 doub Y N 54 A1DET O15 C16 sing N N 55 A1DET C16 O17 doub N N 56 A1DET C8 C9 sing Y N 57 A1DET C8 O7 sing N N 58 A1DET C6 O7 sing N N 59 A1DET C9 C10 sing N N 60 A1DET C1 H11A sing N N 61 A1DET C1 H12A sing N N 62 A1DET C2 H2 sing N N 63 A1DET C6 H62 sing N N 64 A1DET C6 H61 sing N N 65 A1DET C10 H13 sing N N 66 A1DET C10 H12 sing N N 67 A1DET C10 H11 sing N N 68 A1DET C18 H181 sing N N 69 A1DET C18 H182 sing N N 70 A1DET C18 H183 sing N N 71 A1DET C20 H20 sing N N 72 A1DET C20 H20A sing N N 73 A1DET C21 H21 sing N N 74 A1DET S H1 sing N N 75 A1DET C23 H232 sing N N 76 A1DET C23 H231 sing N N 77 A1DET C29 H29 sing N N 78 A1DET C32 H321 sing N N 79 A1DET C32 H322 sing N N 80 A1DET C32 H323 sing N N 81 A1DET O34 H34 sing N N 82 A1DET C35 H35 sing N N 83 A1DET C37 H371 sing N N 84 A1DET C37 H372 sing N N 85 A1DET C38 H381 sing N N 86 A1DET C38 H382 sing N N 87 A1DET N39 H39 sing N N 88 A1DET C40 O40 sing N N 89 A1DET C40 H40 sing N N 90 A1DET C41 H41 sing N N 91 A1DET C43 H432 sing N N 92 A1DET C43 H433 sing N N 93 A1DET C43 H431 sing N N 94 A1DET C44 H44 sing N N 95 A1DET O47 H47 sing N N 96 A1DET C49 H491 sing N N 97 A1DET C49 H492 sing N N 98 A1DET C49 H493 sing N N 99 A1DET C51 H512 sing N N 100 A1DET C51 H511 sing N N 101 A1DET C51 H513 sing N N 102 A1DET C52 H52 sing N N 103 A1DET C54 H542 sing N N 104 A1DET C54 H541 sing N N 105 A1DET O40 H42 sing N N 106 DA OP3 P sing N N 107 DA OP3 HOP3 sing N N 108 DA P OP1 doub N N 109 DA P OP2 sing N N 110 DA P "O5'" sing N N 111 DA OP2 HOP2 sing N N 112 DA "O5'" "C5'" sing N N 113 DA "C5'" "C4'" sing N N 114 DA "C5'" "H5'" sing N N 115 DA "C5'" "H5''" sing N N 116 DA "C4'" "O4'" sing N N 117 DA "C4'" "C3'" sing N N 118 DA "C4'" "H4'" sing N N 119 DA "O4'" "C1'" sing N N 120 DA "C3'" "O3'" sing N N 121 DA "C3'" "C2'" sing N N 122 DA "C3'" "H3'" sing N N 123 DA "O3'" "HO3'" sing N N 124 DA "C2'" "C1'" sing N N 125 DA "C2'" "H2'" sing N N 126 DA "C2'" "H2''" sing N N 127 DA "C1'" N9 sing N N 128 DA "C1'" "H1'" sing N N 129 DA N9 C8 sing Y N 130 DA N9 C4 sing Y N 131 DA C8 N7 doub Y N 132 DA C8 H8 sing N N 133 DA N7 C5 sing Y N 134 DA C5 C6 sing Y N 135 DA C5 C4 doub Y N 136 DA C6 N6 sing N N 137 DA C6 N1 doub Y N 138 DA N6 H61 sing N N 139 DA N6 H62 sing N N 140 DA N1 C2 sing Y N 141 DA C2 N3 doub Y N 142 DA C2 H2 sing N N 143 DA N3 C4 sing Y N 144 DC OP3 P sing N N 145 DC OP3 HOP3 sing N N 146 DC P OP1 doub N N 147 DC P OP2 sing N N 148 DC P "O5'" sing N N 149 DC OP2 HOP2 sing N N 150 DC "O5'" "C5'" sing N N 151 DC "C5'" "C4'" sing N N 152 DC "C5'" "H5'" sing N N 153 DC "C5'" "H5''" sing N N 154 DC "C4'" "O4'" sing N N 155 DC "C4'" "C3'" sing N N 156 DC "C4'" "H4'" sing N N 157 DC "O4'" "C1'" sing N N 158 DC "C3'" "O3'" sing N N 159 DC "C3'" "C2'" sing N N 160 DC "C3'" "H3'" sing N N 161 DC "O3'" "HO3'" sing N N 162 DC "C2'" "C1'" sing N N 163 DC "C2'" "H2'" sing N N 164 DC "C2'" "H2''" sing N N 165 DC "C1'" N1 sing N N 166 DC "C1'" "H1'" sing N N 167 DC N1 C2 sing N N 168 DC N1 C6 sing N N 169 DC C2 O2 doub N N 170 DC C2 N3 sing N N 171 DC N3 C4 doub N N 172 DC C4 N4 sing N N 173 DC C4 C5 sing N N 174 DC N4 H41 sing N N 175 DC N4 H42 sing N N 176 DC C5 C6 doub N N 177 DC C5 H5 sing N N 178 DC C6 H6 sing N N 179 DG OP3 P sing N N 180 DG OP3 HOP3 sing N N 181 DG P OP1 doub N N 182 DG P OP2 sing N N 183 DG P "O5'" sing N N 184 DG OP2 HOP2 sing N N 185 DG "O5'" "C5'" sing N N 186 DG "C5'" "C4'" sing N N 187 DG "C5'" "H5'" sing N N 188 DG "C5'" "H5''" sing N N 189 DG "C4'" "O4'" sing N N 190 DG "C4'" "C3'" sing N N 191 DG "C4'" "H4'" sing N N 192 DG "O4'" "C1'" sing N N 193 DG "C3'" "O3'" sing N N 194 DG "C3'" "C2'" sing N N 195 DG "C3'" "H3'" sing N N 196 DG "O3'" "HO3'" sing N N 197 DG "C2'" "C1'" sing N N 198 DG "C2'" "H2'" sing N N 199 DG "C2'" "H2''" sing N N 200 DG "C1'" N9 sing N N 201 DG "C1'" "H1'" sing N N 202 DG N9 C8 sing Y N 203 DG N9 C4 sing Y N 204 DG C8 N7 doub Y N 205 DG C8 H8 sing N N 206 DG N7 C5 sing Y N 207 DG C5 C6 sing N N 208 DG C5 C4 doub Y N 209 DG C6 O6 doub N N 210 DG C6 N1 sing N N 211 DG N1 C2 sing N N 212 DG N1 H1 sing N N 213 DG C2 N2 sing N N 214 DG C2 N3 doub N N 215 DG N2 H21 sing N N 216 DG N2 H22 sing N N 217 DG N3 C4 sing N N 218 DI OP3 P sing N N 219 DI OP3 HOP3 sing N N 220 DI P OP1 doub N N 221 DI P OP2 sing N N 222 DI P "O5'" sing N N 223 DI OP2 HOP2 sing N N 224 DI "O5'" "C5'" sing N N 225 DI "C5'" "C4'" sing N N 226 DI "C5'" "H5'" sing N N 227 DI "C5'" "H5''" sing N N 228 DI "C4'" "O4'" sing N N 229 DI "C4'" "C3'" sing N N 230 DI "C4'" "H4'" sing N N 231 DI "O4'" "C1'" sing N N 232 DI "C3'" "O3'" sing N N 233 DI "C3'" "C2'" sing N N 234 DI "C3'" "H3'" sing N N 235 DI "O3'" "HO3'" sing N N 236 DI "C2'" "C1'" sing N N 237 DI "C2'" "H2'" sing N N 238 DI "C2'" "H2''" sing N N 239 DI "C1'" N9 sing N N 240 DI "C1'" "H1'" sing N N 241 DI N9 C8 sing Y N 242 DI N9 C4 sing Y N 243 DI C8 N7 doub Y N 244 DI C8 H8 sing N N 245 DI N7 C5 sing Y N 246 DI C5 C6 sing N N 247 DI C5 C4 doub Y N 248 DI C6 O6 doub N N 249 DI C6 N1 sing N N 250 DI N1 C2 sing N N 251 DI N1 H1 sing N N 252 DI C2 N3 doub N N 253 DI C2 H2 sing N N 254 DI N3 C4 sing N N 255 DT OP3 P sing N N 256 DT OP3 HOP3 sing N N 257 DT P OP1 doub N N 258 DT P OP2 sing N N 259 DT P "O5'" sing N N 260 DT OP2 HOP2 sing N N 261 DT "O5'" "C5'" sing N N 262 DT "C5'" "C4'" sing N N 263 DT "C5'" "H5'" sing N N 264 DT "C5'" "H5''" sing N N 265 DT "C4'" "O4'" sing N N 266 DT "C4'" "C3'" sing N N 267 DT "C4'" "H4'" sing N N 268 DT "O4'" "C1'" sing N N 269 DT "C3'" "O3'" sing N N 270 DT "C3'" "C2'" sing N N 271 DT "C3'" "H3'" sing N N 272 DT "O3'" "HO3'" sing N N 273 DT "C2'" "C1'" sing N N 274 DT "C2'" "H2'" sing N N 275 DT "C2'" "H2''" sing N N 276 DT "C1'" N1 sing N N 277 DT "C1'" "H1'" sing N N 278 DT N1 C2 sing N N 279 DT N1 C6 sing N N 280 DT C2 O2 doub N N 281 DT C2 N3 sing N N 282 DT N3 C4 sing N N 283 DT N3 H3 sing N N 284 DT C4 O4 doub N N 285 DT C4 C5 sing N N 286 DT C5 C7 sing N N 287 DT C5 C6 doub N N 288 DT C7 H71 sing N N 289 DT C7 H72 sing N N 290 DT C7 H73 sing N N 291 DT C6 H6 sing N N 292 HOH O H1 sing N N 293 HOH O H2 sing N N 294 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 11BK 'double helix' 11BK 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 12 1_555 -0.002 -0.095 -0.136 -12.837 -12.959 3.028 1 E_DA-2:DT19_F E -2 ? F 19 ? 20 1 1 A DT 2 1_555 B DA 11 1_555 -0.255 -0.124 -0.157 -5.046 -7.407 -1.461 2 E_DT-1:DA18_F E -1 ? F 18 ? 20 1 1 A DA 3 1_555 B DT 10 1_555 -0.055 -0.082 -0.301 -14.239 -5.961 0.604 3 E_DA0:DT17_F E 0 ? F 17 ? 20 1 1 A DG 4 1_555 B DC 9 1_555 -0.301 -0.116 -0.003 -1.071 -8.018 0.654 4 E_DG1:DC16_F E 1 ? F 16 ? 19 1 1 A DC 5 1_555 B DI 8 1_555 0.266 -0.143 -0.021 2.661 -10.394 3.376 5 E_DC2:DI15_F E 2 ? F 15 ? 29 1 1 A DT 6 1_555 B DA 7 1_555 -0.019 -0.119 -0.155 -2.670 -16.732 3.350 6 E_DT3:DA14_F E 3 ? F 14 ? 20 1 1 A DA 7 1_555 B DT 6 1_555 0.174 -0.127 -0.176 2.682 -16.059 1.698 7 E_DA4:DT13_F E 4 ? F 13 ? 20 1 1 A DI 8 1_555 B DC 5 1_555 -0.277 -0.193 -0.007 -2.167 -9.436 2.547 8 E_DI5:DC12_F E 5 ? F 12 ? 29 1 1 A DC 9 1_555 B DG 4 1_555 0.226 -0.045 0.119 0.226 -6.975 0.878 9 E_DC6:DG11_F E 6 ? F 11 ? 19 1 1 A DT 10 1_555 B DA 3 1_555 0.052 -0.124 -0.284 12.610 -6.524 -0.760 10 E_DT7:DA10_F E 7 ? F 10 ? 20 1 1 A DA 11 1_555 B DT 2 1_555 0.206 -0.003 -0.102 5.145 -6.796 -2.539 11 E_DA8:DT9_F E 8 ? F 9 ? 20 1 1 A DT 12 1_555 B DA 1 1_555 0.061 -0.027 -0.034 13.507 -14.823 1.992 12 E_DT9:DA8_F E 9 ? F 8 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 12 1_555 A DT 2 1_555 B DA 11 1_555 -0.525 -0.949 3.159 2.177 2.230 30.212 -2.238 1.417 3.038 4.264 -4.163 30.368 1 EE_DA-2DT-1:DA18DT19_FF E -2 ? F 19 ? E -1 ? F 18 ? 1 A DT 2 1_555 B DA 11 1_555 A DA 3 1_555 B DT 10 1_555 -0.190 0.145 3.534 -0.436 4.449 44.851 -0.244 0.205 3.534 5.814 0.569 45.062 2 EE_DT-1DA0:DT17DA18_FF E -1 ? F 18 ? E 0 ? F 17 ? 1 A DA 3 1_555 B DT 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.089 0.349 3.016 -4.153 7.539 26.161 -1.003 -0.769 2.977 16.110 8.875 27.517 3 EE_DA0DG1:DC16DT17_FF E 0 ? F 17 ? E 1 ? F 16 ? 1 A DG 4 1_555 B DC 9 1_555 A DC 5 1_555 B DI 8 1_555 0.424 -0.284 3.214 -0.090 6.036 30.601 -1.650 -0.805 3.102 11.298 0.169 31.177 4 EE_DG1DC2:DI15DC16_FF E 1 ? F 16 ? E 2 ? F 15 ? 1 A DC 5 1_555 B DI 8 1_555 A DT 6 1_555 B DA 7 1_555 -0.195 -0.359 3.358 3.000 0.464 32.689 -0.717 0.871 3.322 0.823 -5.315 32.825 5 EE_DC2DT3:DA14DI15_FF E 2 ? F 15 ? E 3 ? F 14 ? 1 A DT 6 1_555 B DA 7 1_555 A DA 7 1_555 B DT 6 1_555 0.026 0.669 3.408 0.476 13.718 38.426 -0.678 0.020 3.441 20.077 -0.697 40.717 6 EE_DT3DA4:DT13DA14_FF E 3 ? F 14 ? E 4 ? F 13 ? 1 A DA 7 1_555 B DT 6 1_555 A DI 8 1_555 B DC 5 1_555 0.178 -0.336 3.362 -3.480 -0.056 32.304 -0.591 -0.943 3.325 -0.100 6.232 32.486 7 EE_DA4DI5:DC12DT13_FF E 4 ? F 13 ? E 5 ? F 12 ? 1 A DI 8 1_555 B DC 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.516 -0.381 3.266 -0.998 7.319 30.781 -2.037 0.764 3.110 13.545 1.848 31.634 8 EE_DI5DC6:DG11DC12_FF E 5 ? F 12 ? E 6 ? F 11 ? 1 A DC 9 1_555 B DG 4 1_555 A DT 10 1_555 B DA 3 1_555 0.134 0.203 3.023 4.981 6.129 26.287 -0.988 0.868 2.968 13.105 -10.651 27.428 9 EE_DC6DT7:DA10DG11_FF E 6 ? F 11 ? E 7 ? F 10 ? 1 A DT 10 1_555 B DA 3 1_555 A DA 11 1_555 B DT 2 1_555 -0.002 0.313 3.534 -0.806 5.067 42.989 -0.112 -0.083 3.546 6.885 1.095 43.280 10 EE_DT7DA8:DT9DA10_FF E 7 ? F 10 ? E 8 ? F 9 ? 1 A DA 11 1_555 B DT 2 1_555 A DT 12 1_555 B DA 1 1_555 0.654 -0.976 3.136 -2.231 0.553 31.534 -1.888 -1.592 3.066 1.015 4.098 31.616 11 EE_DA8DT9:DA8DT9_FF E 8 ? F 9 ? E 9 ? F 8 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01CA243529 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1MJQ _pdbx_initial_refinement_model.details 'DNA only' # _atom_sites.entry_id 11BK _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.025478 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021196 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019330 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ #