HEADER ISOMERASE/DNA 02-MAR-26 11LB TITLE E.COLI DNA TOPOISOMERASE 3 IN COMPLEX WITH AN 8MER SSDNA OLIGO TITLE 2 GCAACTGG COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA TOPOISOMERASE III; COMPND 5 EC: 5.6.2.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*AP*AP*CP*TP*GP*G)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: TOPB, B1763, JW1752; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SOLUBL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG28; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS ECTOPO3, SSDNA COMPLEX, ISOMERASE, ISOMERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,Y.C.TSE DINH REVDAT 1 29-APR-26 11LB 0 JRNL AUTH K.TAN,Y.C.TSE DINH JRNL TITL E.COLI DNA TOPOISOMERASE 3 IN COMPLEX WITH AN 8MER SSDNA JRNL TITL 2 OLIGO GCAACTGG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 64581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 3178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.4400 - 5.2600 0.97 2731 129 0.1716 0.2018 REMARK 3 2 5.2600 - 4.1800 0.99 2724 163 0.1463 0.1619 REMARK 3 3 4.1800 - 3.6500 1.00 2713 156 0.1434 0.1856 REMARK 3 4 3.6500 - 3.3100 1.00 2738 155 0.1602 0.1872 REMARK 3 5 3.3100 - 3.0800 0.98 2702 126 0.1654 0.2018 REMARK 3 6 3.0800 - 2.9000 0.95 2576 161 0.1860 0.2208 REMARK 3 7 2.9000 - 2.7500 0.99 2656 139 0.1853 0.2116 REMARK 3 8 2.7500 - 2.6300 0.99 2747 133 0.1818 0.2032 REMARK 3 9 2.6300 - 2.5300 0.99 2739 110 0.1755 0.2205 REMARK 3 10 2.5300 - 2.4400 0.99 2665 140 0.1813 0.2310 REMARK 3 11 2.4400 - 2.3700 0.99 2714 157 0.1834 0.2339 REMARK 3 12 2.3700 - 2.3000 0.99 2676 135 0.1771 0.2140 REMARK 3 13 2.3000 - 2.2400 0.99 2697 145 0.1917 0.2499 REMARK 3 14 2.2400 - 2.1800 0.98 2688 139 0.1983 0.2241 REMARK 3 15 2.1800 - 2.1300 0.95 2560 126 0.2029 0.2645 REMARK 3 16 2.1300 - 2.0900 0.93 2530 145 0.2048 0.2662 REMARK 3 17 2.0900 - 2.0500 0.97 2629 131 0.2063 0.2573 REMARK 3 18 2.0500 - 2.0100 0.97 2704 130 0.2119 0.2038 REMARK 3 19 2.0100 - 1.9700 0.98 2663 142 0.2179 0.2948 REMARK 3 20 1.9700 - 1.9400 0.97 2638 125 0.2293 0.2692 REMARK 3 21 1.9400 - 1.9100 0.97 2688 115 0.2347 0.2492 REMARK 3 22 1.9100 - 1.8800 0.97 2668 138 0.2665 0.3030 REMARK 3 23 1.8800 - 1.8500 0.96 2557 138 0.3153 0.3817 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.223 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.336 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5283 REMARK 3 ANGLE : 1.141 7176 REMARK 3 CHIRALITY : 0.073 786 REMARK 3 PLANARITY : 0.011 921 REMARK 3 DIHEDRAL : 18.204 2025 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3606 -10.6755 -15.3736 REMARK 3 T TENSOR REMARK 3 T11: 0.2760 T22: 0.3401 REMARK 3 T33: 0.2390 T12: 0.0365 REMARK 3 T13: 0.0589 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 3.3466 L22: 3.0172 REMARK 3 L33: 2.7125 L12: -0.9476 REMARK 3 L13: -0.9200 L23: -0.8235 REMARK 3 S TENSOR REMARK 3 S11: 0.0450 S12: 0.4976 S13: -0.2082 REMARK 3 S21: -0.6274 S22: -0.0684 S23: -0.4367 REMARK 3 S31: 0.2852 S32: 0.5142 S33: -0.0292 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4442 16.6584 -8.0344 REMARK 3 T TENSOR REMARK 3 T11: 0.2969 T22: 0.2526 REMARK 3 T33: 0.2747 T12: -0.0439 REMARK 3 T13: 0.0481 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.1617 L22: 2.5898 REMARK 3 L33: 0.6529 L12: -0.6433 REMARK 3 L13: -0.2787 L23: 1.2651 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: 0.0927 S13: 0.0521 REMARK 3 S21: -0.3252 S22: 0.1056 S23: -0.2860 REMARK 3 S31: -0.0808 S32: 0.0832 S33: -0.1067 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4528 -5.7594 -12.2300 REMARK 3 T TENSOR REMARK 3 T11: 0.2946 T22: 0.2430 REMARK 3 T33: 0.2012 T12: -0.0206 REMARK 3 T13: 0.0259 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.1445 L22: 1.4312 REMARK 3 L33: 2.5640 L12: -0.1158 REMARK 3 L13: 0.2360 L23: -0.3223 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: 0.1796 S13: -0.0427 REMARK 3 S21: -0.2862 S22: 0.0735 S23: 0.1409 REMARK 3 S31: 0.0423 S32: -0.2304 S33: 0.0462 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0926 10.0854 24.2415 REMARK 3 T TENSOR REMARK 3 T11: 0.2120 T22: 0.1611 REMARK 3 T33: 0.1765 T12: 0.0028 REMARK 3 T13: -0.0060 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.6924 L22: 0.8013 REMARK 3 L33: 1.5464 L12: 0.3304 REMARK 3 L13: -0.6305 L23: -0.9712 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: -0.1407 S13: 0.0428 REMARK 3 S21: 0.1476 S22: -0.0201 S23: 0.0442 REMARK 3 S31: -0.0968 S32: -0.0040 S33: -0.0201 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 429 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4388 -13.6078 21.0706 REMARK 3 T TENSOR REMARK 3 T11: 0.1033 T22: 0.1449 REMARK 3 T33: 0.1595 T12: 0.0025 REMARK 3 T13: -0.0227 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.2688 L22: 0.7011 REMARK 3 L33: 1.7060 L12: -0.1315 REMARK 3 L13: -0.3823 L23: 0.3960 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: -0.0148 S13: -0.1157 REMARK 3 S21: 0.0823 S22: -0.0555 S23: -0.0184 REMARK 3 S31: 0.0587 S32: -0.1891 S33: 0.0562 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 430 THROUGH 484 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4355 -15.5137 40.3592 REMARK 3 T TENSOR REMARK 3 T11: 0.3843 T22: 0.4083 REMARK 3 T33: 0.2185 T12: -0.0173 REMARK 3 T13: 0.0544 T23: 0.0525 REMARK 3 L TENSOR REMARK 3 L11: 0.2074 L22: 0.6715 REMARK 3 L33: 1.3088 L12: -0.4024 REMARK 3 L13: -0.5584 L23: 0.9461 REMARK 3 S TENSOR REMARK 3 S11: -0.1090 S12: -0.1113 S13: -0.0800 REMARK 3 S21: 0.2205 S22: 0.0385 S23: 0.1205 REMARK 3 S31: 0.1732 S32: -0.1307 S33: 0.0654 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 485 THROUGH 587 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8584 9.5756 15.8680 REMARK 3 T TENSOR REMARK 3 T11: 0.1249 T22: 0.1277 REMARK 3 T33: 0.1681 T12: 0.0136 REMARK 3 T13: 0.0055 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 1.2905 L22: 2.5548 REMARK 3 L33: 1.6574 L12: 0.2052 REMARK 3 L13: -0.5574 L23: -0.3177 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: -0.0011 S13: -0.0327 REMARK 3 S21: 0.1372 S22: 0.0387 S23: 0.2733 REMARK 3 S31: -0.0541 S32: -0.2148 S33: -0.0010 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 588 THROUGH 620 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0409 27.0346 9.2385 REMARK 3 T TENSOR REMARK 3 T11: 0.3120 T22: 0.2341 REMARK 3 T33: 0.2519 T12: 0.0558 REMARK 3 T13: 0.0303 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 1.8601 L22: 3.6228 REMARK 3 L33: 2.0869 L12: -0.4471 REMARK 3 L13: -0.8174 L23: -0.1971 REMARK 3 S TENSOR REMARK 3 S11: 0.1745 S12: -0.0842 S13: 0.0648 REMARK 3 S21: 0.4549 S22: 0.1034 S23: -0.0467 REMARK 3 S31: -0.3650 S32: -0.1115 S33: -0.2743 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 710 THROUGH 715 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3830 16.8248 4.8333 REMARK 3 T TENSOR REMARK 3 T11: 0.2397 T22: 0.2628 REMARK 3 T33: 0.3254 T12: -0.0214 REMARK 3 T13: 0.0243 T23: 0.0604 REMARK 3 L TENSOR REMARK 3 L11: 3.6132 L22: 5.9305 REMARK 3 L33: 7.3678 L12: -0.4813 REMARK 3 L13: 0.1682 L23: 1.2384 REMARK 3 S TENSOR REMARK 3 S11: -0.2710 S12: 0.2073 S13: 0.0508 REMARK 3 S21: -0.6110 S22: 0.1249 S23: -1.1420 REMARK 3 S31: -0.4303 S32: 0.8972 S33: 0.1386 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 11LB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-26. REMARK 100 THE DEPOSITION ID IS D_1000305589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64910 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 60.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.91700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, 20%(W/V)PEG REMARK 280 4000, 10% (V/V) 2-PROPANOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.44200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 621 REMARK 465 SER A 622 REMARK 465 GLY A 623 REMARK 465 GLY A 624 REMARK 465 SER A 625 REMARK 465 ALA A 626 REMARK 465 ASP A 627 REMARK 465 LYS A 628 REMARK 465 LYS A 629 REMARK 465 LYS A 630 REMARK 465 ALA A 631 REMARK 465 ALA A 632 REMARK 465 PRO A 633 REMARK 465 ARG A 634 REMARK 465 LYS A 635 REMARK 465 ARG A 636 REMARK 465 SER A 637 REMARK 465 ALA A 638 REMARK 465 LYS A 639 REMARK 465 LYS A 640 REMARK 465 GLU A 641 REMARK 465 ASN A 642 REMARK 465 LEU A 643 REMARK 465 TYR A 644 REMARK 465 PHE A 645 REMARK 465 GLN A 646 REMARK 465 DG B 708 REMARK 465 DC B 709 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 107 CG GLU A 107 CD 0.114 REMARK 500 DA B 711 O3' DA B 711 C3' -0.051 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 151.02 -46.52 REMARK 500 PRO A 104 47.87 -85.84 REMARK 500 ARG A 330 52.80 -100.56 REMARK 500 ASP A 379 -85.41 -119.82 REMARK 500 LYS A 477 144.92 -175.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 292 SER A 293 148.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 714 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 519 O REMARK 620 2 GLY A 521 O 89.8 REMARK 620 3 GLY A 523 O 144.5 99.8 REMARK 620 4 HOH A 939 O 103.7 80.6 111.6 REMARK 620 5 HOH A1092 O 84.9 160.3 95.5 82.3 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11FC RELATED DB: PDB REMARK 900 RELATED ID: 11GT RELATED DB: PDB DBREF 11LB A 1 640 UNP P14294 TOP3_ECOLI 1 640 DBREF 11LB B 708 715 PDB 11LB 11LB 708 715 SEQADV 11LB GLU A 641 UNP P14294 EXPRESSION TAG SEQADV 11LB ASN A 642 UNP P14294 EXPRESSION TAG SEQADV 11LB LEU A 643 UNP P14294 EXPRESSION TAG SEQADV 11LB TYR A 644 UNP P14294 EXPRESSION TAG SEQADV 11LB PHE A 645 UNP P14294 EXPRESSION TAG SEQADV 11LB GLN A 646 UNP P14294 EXPRESSION TAG SEQRES 1 A 646 MET ARG LEU PHE ILE ALA GLU LYS PRO SER LEU ALA ARG SEQRES 2 A 646 ALA ILE ALA ASP VAL LEU PRO LYS PRO HIS ARG LYS GLY SEQRES 3 A 646 ASP GLY PHE ILE GLU CYS GLY ASN GLY GLN VAL VAL THR SEQRES 4 A 646 TRP CYS ILE GLY HIS LEU LEU GLU GLN ALA GLN PRO ASP SEQRES 5 A 646 ALA TYR ASP SER ARG TYR ALA ARG TRP ASN LEU ALA ASP SEQRES 6 A 646 LEU PRO ILE VAL PRO GLU LYS TRP GLN LEU GLN PRO ARG SEQRES 7 A 646 PRO SER VAL THR LYS GLN LEU ASN VAL ILE LYS ARG PHE SEQRES 8 A 646 LEU HIS GLU ALA SER GLU ILE VAL HIS ALA GLY ASP PRO SEQRES 9 A 646 ASP ARG GLU GLY GLN LEU LEU VAL ASP GLU VAL LEU ASP SEQRES 10 A 646 TYR LEU GLN LEU ALA PRO GLU LYS ARG GLN GLN VAL GLN SEQRES 11 A 646 ARG CYS LEU ILE ASN ASP LEU ASN PRO GLN ALA VAL GLU SEQRES 12 A 646 ARG ALA ILE ASP ARG LEU ARG SER ASN SER GLU PHE VAL SEQRES 13 A 646 PRO LEU CYS VAL SER ALA LEU ALA ARG ALA ARG ALA ASP SEQRES 14 A 646 TRP LEU TYR GLY ILE ASN MET THR ARG ALA TYR THR ILE SEQRES 15 A 646 LEU GLY ARG ASN ALA GLY TYR GLN GLY VAL LEU SER VAL SEQRES 16 A 646 GLY ARG VAL GLN THR PRO VAL LEU GLY LEU VAL VAL ARG SEQRES 17 A 646 ARG ASP GLU GLU ILE GLU ASN PHE VAL ALA LYS ASP PHE SEQRES 18 A 646 PHE GLU VAL LYS ALA HIS ILE VAL THR PRO ALA ASP GLU SEQRES 19 A 646 ARG PHE THR ALA ILE TRP GLN PRO SER GLU ALA CYS GLU SEQRES 20 A 646 PRO TYR GLN ASP GLU GLU GLY ARG LEU LEU HIS ARG PRO SEQRES 21 A 646 LEU ALA GLU HIS VAL VAL ASN ARG ILE SER GLY GLN PRO SEQRES 22 A 646 ALA ILE VAL THR SER TYR ASN ASP LYS ARG GLU SER GLU SEQRES 23 A 646 SER ALA PRO LEU PRO PHE SER LEU SER ALA LEU GLN ILE SEQRES 24 A 646 GLU ALA ALA LYS ARG PHE GLY LEU SER ALA GLN ASN VAL SEQRES 25 A 646 LEU ASP ILE CYS GLN LYS LEU TYR GLU THR HIS LYS LEU SEQRES 26 A 646 ILE THR TYR PRO ARG SER ASP CYS ARG TYR LEU PRO GLU SEQRES 27 A 646 GLU HIS PHE ALA GLY ARG HIS ALA VAL MET ASN ALA ILE SEQRES 28 A 646 SER VAL HIS ALA PRO ASP LEU LEU PRO GLN PRO VAL VAL SEQRES 29 A 646 ASP PRO ASP ILE ARG ASN ARG CYS TRP ASP ASP LYS LYS SEQRES 30 A 646 VAL ASP ALA HIS HIS ALA ILE ILE PRO THR ALA ARG SER SEQRES 31 A 646 SER ALA ILE ASN LEU THR GLU ASN GLU ALA LYS VAL TYR SEQRES 32 A 646 ASN LEU ILE ALA ARG GLN TYR LEU MET GLN PHE CYS PRO SEQRES 33 A 646 ASP ALA VAL PHE ARG LYS CYS VAL ILE GLU LEU ASP ILE SEQRES 34 A 646 ALA LYS GLY LYS PHE VAL ALA LYS ALA ARG PHE LEU ALA SEQRES 35 A 646 GLU ALA GLY TRP ARG THR LEU LEU GLY SER LYS GLU ARG SEQRES 36 A 646 ASP GLU GLU ASN ASP GLY THR PRO LEU PRO VAL VAL ALA SEQRES 37 A 646 LYS GLY ASP GLU LEU LEU CYS GLU LYS GLY GLU VAL VAL SEQRES 38 A 646 GLU ARG GLN THR GLN PRO PRO ARG HIS PHE THR ASP ALA SEQRES 39 A 646 THR LEU LEU SER ALA MET THR GLY ILE ALA ARG PHE VAL SEQRES 40 A 646 GLN ASP LYS ASP LEU LYS LYS ILE LEU ARG ALA THR ASP SEQRES 41 A 646 GLY LEU GLY THR GLU ALA THR ARG ALA GLY ILE ILE GLU SEQRES 42 A 646 LEU LEU PHE LYS ARG GLY PHE LEU THR LYS LYS GLY ARG SEQRES 43 A 646 TYR ILE HIS SER THR ASP ALA GLY LYS ALA LEU PHE HIS SEQRES 44 A 646 SER LEU PRO GLU MET ALA THR ARG PRO ASP MET THR ALA SEQRES 45 A 646 HIS TRP GLU SER VAL LEU THR GLN ILE SER GLU LYS GLN SEQRES 46 A 646 CYS ARG TYR GLN ASP PHE MET GLN PRO LEU VAL GLY THR SEQRES 47 A 646 LEU TYR GLN LEU ILE ASP GLN ALA LYS ARG THR PRO VAL SEQRES 48 A 646 ARG GLN PHE ARG GLY ILE VAL ALA PRO GLY SER GLY GLY SEQRES 49 A 646 SER ALA ASP LYS LYS LYS ALA ALA PRO ARG LYS ARG SER SEQRES 50 A 646 ALA LYS LYS GLU ASN LEU TYR PHE GLN SEQRES 1 B 8 DG DC DA DA DC DT DG DG HET GOL A 702 6 HET GOL A 703 6 HET EDO A 704 4 HET GOL A 705 6 HET GOL A 706 6 HET GOL A 707 6 HET GOL A 708 6 HET GOL A 709 6 HET GOL A 710 6 HET EDO A 711 4 HET FLC A 712 13 HET ACT A 713 4 HET NA A 714 1 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM FLC CITRATE ANION HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GOL 8(C3 H8 O3) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 13 FLC C6 H5 O7 3- FORMUL 14 ACT C2 H3 O2 1- FORMUL 15 NA NA 1+ FORMUL 16 HOH *355(H2 O) HELIX 1 AA1 LYS A 8 LEU A 19 1 12 HELIX 2 AA2 GLN A 50 ASP A 55 1 6 HELIX 3 AA3 SER A 56 ARG A 60 5 5 HELIX 4 AA4 ASN A 62 LEU A 66 5 5 HELIX 5 AA5 ARG A 78 HIS A 93 1 16 HELIX 6 AA6 ASP A 105 LEU A 119 1 15 HELIX 7 AA7 ALA A 122 GLN A 127 1 6 HELIX 8 AA8 ASN A 138 ARG A 148 1 11 HELIX 9 AA9 SER A 153 PHE A 155 5 3 HELIX 10 AB1 LEU A 158 ALA A 187 1 30 HELIX 11 AB2 VAL A 198 ASN A 215 1 18 HELIX 12 AB3 SER A 243 GLN A 250 5 8 HELIX 13 AB4 HIS A 258 SER A 270 1 13 HELIX 14 AB5 SER A 293 GLY A 306 1 14 HELIX 15 AB6 SER A 308 THR A 322 1 15 HELIX 16 AB7 PRO A 337 ALA A 342 5 6 HELIX 17 AB8 GLY A 343 ALA A 355 1 13 HELIX 18 AB9 ASP A 374 VAL A 378 5 5 HELIX 19 AC1 THR A 396 GLN A 413 1 18 HELIX 20 AC2 ALA A 444 LEU A 450 5 7 HELIX 21 AC3 SER A 452 ASP A 456 5 5 HELIX 22 AC4 ASP A 493 GLY A 502 1 10 HELIX 23 AC5 ILE A 503 VAL A 507 5 5 HELIX 24 AC6 ASP A 509 THR A 519 1 11 HELIX 25 AC7 THR A 527 ARG A 538 1 12 HELIX 26 AC8 THR A 551 LEU A 561 1 11 HELIX 27 AC9 PRO A 562 ARG A 567 1 6 HELIX 28 AD1 PRO A 568 GLU A 583 1 16 HELIX 29 AD2 ARG A 587 ARG A 608 1 22 HELIX 30 AD3 VAL A 611 ARG A 615 5 5 SHEET 1 AA1 7 HIS A 23 LYS A 25 0 SHEET 2 AA1 7 PHE A 29 CYS A 32 -1 O GLU A 31 N ARG A 24 SHEET 3 AA1 7 GLN A 36 TRP A 40 -1 O VAL A 38 N ILE A 30 SHEET 4 AA1 7 ARG A 2 ALA A 6 1 N PHE A 4 O THR A 39 SHEET 5 AA1 7 GLU A 97 ALA A 101 1 O VAL A 99 N LEU A 3 SHEET 6 AA1 7 GLN A 130 ARG A 131 1 O GLN A 130 N HIS A 100 SHEET 7 AA1 7 ARG A 150 SER A 151 -1 O ARG A 150 N ARG A 131 SHEET 1 AA2 7 ASP A 220 VAL A 229 0 SHEET 2 AA2 7 ARG A 235 GLN A 241 -1 O ALA A 238 N ALA A 226 SHEET 3 AA2 7 GLY A 432 GLU A 443 -1 O LYS A 433 N GLN A 241 SHEET 4 AA2 7 ALA A 418 ILE A 429 -1 N LEU A 427 O PHE A 434 SHEET 5 AA2 7 PRO A 273 GLU A 286 -1 N GLU A 284 O PHE A 420 SHEET 6 AA2 7 GLU A 472 GLN A 484 -1 O LEU A 473 N ALA A 274 SHEET 7 AA2 7 ASP A 220 VAL A 229 -1 N PHE A 221 O ARG A 483 SHEET 1 AA3 3 PHE A 491 THR A 492 0 SHEET 2 AA3 3 TYR A 547 SER A 550 -1 O ILE A 548 N PHE A 491 SHEET 3 AA3 3 LEU A 541 LYS A 544 -1 N THR A 542 O HIS A 549 LINK O THR A 519 NA NA A 714 1555 1555 2.28 LINK O GLY A 521 NA NA A 714 1555 1555 2.48 LINK O GLY A 523 NA NA A 714 1555 1555 2.32 LINK NA NA A 714 O HOH A 939 1555 1555 2.36 LINK NA NA A 714 O HOH A1092 1555 1555 2.49 CISPEP 1 LYS A 21 PRO A 22 0 -2.60 CISPEP 2 LEU A 66 PRO A 67 0 -0.80 CISPEP 3 LEU A 359 PRO A 360 0 -1.08 CRYST1 38.685 120.884 85.609 90.00 99.34 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025850 0.000000 0.004253 0.00000 SCALE2 0.000000 0.008272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011838 0.00000 CONECT 4156 5168 CONECT 4171 5168 CONECT 4183 5168 CONECT 5095 5096 5097 CONECT 5096 5095 CONECT 5097 5095 5098 5099 CONECT 5098 5097 CONECT 5099 5097 5100 CONECT 5100 5099 CONECT 5101 5102 5103 CONECT 5102 5101 CONECT 5103 5101 5104 5105 CONECT 5104 5103 CONECT 5105 5103 5106 CONECT 5106 5105 CONECT 5107 5108 5109 CONECT 5108 5107 CONECT 5109 5107 5110 CONECT 5110 5109 CONECT 5111 5112 5113 CONECT 5112 5111 CONECT 5113 5111 5114 5115 CONECT 5114 5113 CONECT 5115 5113 5116 CONECT 5116 5115 CONECT 5117 5118 5119 CONECT 5118 5117 CONECT 5119 5117 5120 5121 CONECT 5120 5119 CONECT 5121 5119 5122 CONECT 5122 5121 CONECT 5123 5124 5125 CONECT 5124 5123 CONECT 5125 5123 5126 5127 CONECT 5126 5125 CONECT 5127 5125 5128 CONECT 5128 5127 CONECT 5129 5130 5131 CONECT 5130 5129 CONECT 5131 5129 5132 5133 CONECT 5132 5131 CONECT 5133 5131 5134 CONECT 5134 5133 CONECT 5135 5136 5137 CONECT 5136 5135 CONECT 5137 5135 5138 5139 CONECT 5138 5137 CONECT 5139 5137 5140 CONECT 5140 5139 CONECT 5141 5142 5143 CONECT 5142 5141 CONECT 5143 5141 5144 5145 CONECT 5144 5143 CONECT 5145 5143 5146 CONECT 5146 5145 CONECT 5147 5148 5149 CONECT 5148 5147 CONECT 5149 5147 5150 CONECT 5150 5149 CONECT 5151 5152 5157 5158 CONECT 5152 5151 5153 CONECT 5153 5152 5154 5155 5163 CONECT 5154 5153 5159 5160 CONECT 5155 5153 5156 CONECT 5156 5155 5161 5162 CONECT 5157 5151 CONECT 5158 5151 CONECT 5159 5154 CONECT 5160 5154 CONECT 5161 5156 CONECT 5162 5156 CONECT 5163 5153 CONECT 5164 5165 5166 5167 CONECT 5165 5164 CONECT 5166 5164 CONECT 5167 5164 CONECT 5168 4156 4171 4183 5307 CONECT 5168 5460 CONECT 5307 5168 CONECT 5460 5168 MASTER 449 0 13 30 17 0 0 6 5488 2 80 51 END