HEADER TRANSCRIPTION 13-FEB-26 11AF TITLE CRYSTAL STRUCTURE OF JADE3 PZP DOMAIN IN COMPLEX WITH HISTONE H3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.1,PROTEIN JADE-3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HISTONE H3/A,HISTONE H3/B,HISTONE H3/C,HISTONE H3/D,HISTONE COMPND 5 H3/F,HISTONE H3/H,HISTONE H3/I,HISTONE H3/J,HISTONE H3/K,HISTONE COMPND 6 H3/L,JADE FAMILY PHD FINGER PROTEIN 3,PHD FINGER PROTEIN 16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: H3C1, H3FA, HIST1H3A, H3C2, H3FL, HIST1H3B, H3C3, H3FC SOURCE 6 HIST1H3C, H3C4, H3FB, HIST1H3D, H3C6, H3FD, HIST1H3E, H3C7, H3FI, SOURCE 7 HIST1H3F, H3C8, H3FH, HIST1H3G, H3C10, H3FK, HIST1H3H, H3C11, H3FF, SOURCE 8 HIST1H3I, H3C12, H3FJ, HIST1H3J, JADE3, KIAA0215, PHF16; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HBO1, JADE, PZP, HISTONE, DNA, CHROMATIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.SELVAM,N.GAURAV,T.G.KUTATELADZE REVDAT 1 22-JUL-26 11AF 0 JRNL AUTH N.GAURAV,L.K.EBERT,C.LACHANCE,K.SELVAM,R.W.CHEN,W.QIN, JRNL AUTH 2 V.POZHARSKAIA,C.CHI,V.COTE,K.L.COX,H.A.FUCHS,C.A.MUSSELMAN, JRNL AUTH 3 H.LEONHARDT,N.MORRAL,K.SONG,M.G.POIRIER,J.COTE,B.SCHERMER, JRNL AUTH 4 T.G.KUTATELADZE JRNL TITL DISTINCT ROLES OF THE JADE AND BRPF SCAFFOLDING SUBUNITS OF JRNL TITL 2 THE ACETYLTRANSFERASE HBO1 COMPLEX. JRNL REF NAT COMMUN 2026 JRNL REFN ESSN 2041-1723 JRNL PMID 42431943 JRNL DOI 10.1038/S41467-026-75379-W REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 11264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 612 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 779 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2565 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.04000 REMARK 3 B22 (A**2) : 1.85000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.181 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.356 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.266 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.078 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.897 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.862 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2630 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2481 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3565 ; 1.795 ; 1.813 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5753 ; 0.627 ; 1.763 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 342 ; 7.618 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 11 ;13.985 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 450 ;19.234 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 415 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3000 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 540 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1374 ; 2.590 ; 2.614 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1374 ; 2.590 ; 2.614 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1711 ; 4.280 ; 4.678 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1712 ; 4.279 ; 4.680 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1256 ; 2.638 ; 2.745 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1257 ; 2.637 ; 2.748 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1854 ; 4.265 ; 4.972 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2806 ; 6.466 ;23.530 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2803 ; 6.452 ;23.540 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 11AF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-26. REMARK 100 THE DEPOSITION ID IS D_1000305185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11979 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 1.04600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 8.5 AND 25% PEG 5000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.20750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.21300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.20750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.21300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 185 REMARK 465 THR A 186 REMARK 465 ALA A 187 REMARK 465 ARG A 188 REMARK 465 LYS A 189 REMARK 465 SER A 190 REMARK 465 THR A 191 REMARK 465 GLY A 192 REMARK 465 GLY A 193 REMARK 465 SER A 194 REMARK 465 GLY A 195 REMARK 465 SER A 196 REMARK 465 SER A 197 REMARK 465 ASP A 198 REMARK 465 GLU A 199 REMARK 465 ASN A 368 REMARK 465 ARG A 369 REMARK 465 GLN A 370 REMARK 465 GLN B 185 REMARK 465 THR B 186 REMARK 465 ALA B 187 REMARK 465 ARG B 188 REMARK 465 LYS B 189 REMARK 465 SER B 190 REMARK 465 THR B 191 REMARK 465 GLY B 192 REMARK 465 GLY B 193 REMARK 465 SER B 194 REMARK 465 GLY B 195 REMARK 465 SER B 196 REMARK 465 SER B 197 REMARK 465 ASP B 198 REMARK 465 GLU B 199 REMARK 465 ASN B 368 REMARK 465 ARG B 369 REMARK 465 GLN B 370 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 ILE A 349 CG1 CG2 CD1 REMARK 470 LEU A 350 CG CD1 CD2 REMARK 470 ASP A 351 CG OD1 OD2 REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 ASP A 354 CG OD1 OD2 REMARK 470 GLU A 355 CG CD OE1 OE2 REMARK 470 LYS A 357 CG CD CE NZ REMARK 470 GLU B 212 CG CD OE1 OE2 REMARK 470 GLU B 213 CG CD OE1 OE2 REMARK 470 LYS B 222 CG CD CE NZ REMARK 470 LYS B 347 CG CD CE NZ REMARK 470 ILE B 349 CG1 CG2 CD1 REMARK 470 LEU B 350 CG CD1 CD2 REMARK 470 ASP B 351 CG OD1 OD2 REMARK 470 GLU B 352 CG CD OE1 OE2 REMARK 470 GLU B 355 CG CD OE1 OE2 REMARK 470 LYS B 357 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 307 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 3 -155.95 -126.22 REMARK 500 ARG A 207 15.58 82.63 REMARK 500 GLU A 352 -23.05 72.22 REMARK 500 ARG B 207 16.69 82.07 REMARK 500 GLU B 212 -147.46 -96.24 REMARK 500 LYS B 318 53.42 -92.51 REMARK 500 ASP B 351 -94.13 -120.49 REMARK 500 GLU B 352 -80.28 -87.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 2 0.08 SIDE CHAIN REMARK 500 ARG A 293 0.20 SIDE CHAIN REMARK 500 ARG B 307 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 203 SG REMARK 620 2 CYS A 206 SG 110.5 REMARK 620 3 HIS A 228 ND1 122.4 93.6 REMARK 620 4 CYS A 231 SG 118.7 107.8 100.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 220 SG REMARK 620 2 CYS A 223 SG 116.3 REMARK 620 3 CYS A 244 SG 111.6 114.4 REMARK 620 4 CYS A 247 SG 104.4 104.0 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 255 SG REMARK 620 2 CYS A 258 SG 121.6 REMARK 620 3 HIS A 276 ND1 99.6 99.2 REMARK 620 4 CYS A 279 SG 109.2 112.4 113.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 312 SG REMARK 620 2 CYS A 315 SG 113.6 REMARK 620 3 HIS A 335 ND1 107.8 99.7 REMARK 620 4 CYS A 338 SG 111.4 112.2 111.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 325 SG REMARK 620 2 CYS A 330 SG 107.6 REMARK 620 3 CYS A 362 SG 113.0 118.3 REMARK 620 4 HIS A 365 ND1 114.9 105.6 97.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 203 SG REMARK 620 2 CYS B 206 SG 103.4 REMARK 620 3 HIS B 228 ND1 121.6 98.4 REMARK 620 4 CYS B 231 SG 113.1 108.6 109.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 220 SG REMARK 620 2 CYS B 223 SG 112.7 REMARK 620 3 CYS B 244 SG 106.2 116.2 REMARK 620 4 CYS B 247 SG 107.1 111.0 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 255 SG REMARK 620 2 CYS B 258 SG 114.4 REMARK 620 3 HIS B 276 ND1 102.3 95.8 REMARK 620 4 CYS B 279 SG 109.7 115.5 118.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 312 SG REMARK 620 2 CYS B 315 SG 107.7 REMARK 620 3 HIS B 335 ND1 100.7 99.3 REMARK 620 4 CYS B 338 SG 118.6 118.5 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 325 SG REMARK 620 2 CYS B 330 SG 110.9 REMARK 620 3 CYS B 362 SG 114.4 115.3 REMARK 620 4 HIS B 365 ND1 113.9 102.6 98.6 REMARK 620 N 1 2 3 DBREF 11AF A 1 192 UNP P68431 H31_HUMAN 2 13 DBREF 11AF A 198 370 UNP Q92613 JADE3_HUMAN 198 370 DBREF 11AF B 1 192 UNP P68431 H31_HUMAN 2 13 DBREF 11AF B 198 370 UNP Q92613 JADE3_HUMAN 198 370 SEQADV 11AF GLY A 193 UNP P68431 LINKER SEQADV 11AF SER A 194 UNP P68431 LINKER SEQADV 11AF GLY A 195 UNP P68431 LINKER SEQADV 11AF SER A 196 UNP P68431 LINKER SEQADV 11AF SER A 197 UNP P68431 LINKER SEQADV 11AF GLY B 193 UNP P68431 LINKER SEQADV 11AF SER B 194 UNP P68431 LINKER SEQADV 11AF GLY B 195 UNP P68431 LINKER SEQADV 11AF SER B 196 UNP P68431 LINKER SEQADV 11AF SER B 197 UNP P68431 LINKER SEQRES 1 A 190 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 A 190 SER GLY SER SER ASP GLU ASP VAL ILE CYS ASP VAL CYS SEQRES 3 A 190 ARG SER PRO ASP SER GLU GLU GLY ASN ASP MET VAL PHE SEQRES 4 A 190 CYS ASP LYS CYS ASN VAL CYS VAL HIS GLN ALA CYS TYR SEQRES 5 A 190 GLY ILE LEU LYS VAL PRO GLU GLY SER TRP LEU CYS ARG SEQRES 6 A 190 SER CYS VAL LEU GLY ILE TYR PRO GLN CYS VAL LEU CYS SEQRES 7 A 190 PRO LYS LYS GLY GLY ALA LEU LYS THR THR LYS THR GLY SEQRES 8 A 190 THR LYS TRP ALA HIS VAL SER CYS ALA LEU TRP ILE PRO SEQRES 9 A 190 GLU VAL SER ILE ALA CYS PRO GLU ARG MET GLU PRO ILE SEQRES 10 A 190 THR LYS ILE SER HIS ILE PRO PRO SER ARG TRP ALA LEU SEQRES 11 A 190 VAL CYS ASN LEU CYS LYS LEU LYS THR GLY ALA CYS ILE SEQRES 12 A 190 GLN CYS SER ILE LYS SER CYS ILE THR ALA PHE HIS VAL SEQRES 13 A 190 THR CYS ALA PHE GLU HIS GLY LEU GLU MET LYS THR ILE SEQRES 14 A 190 LEU ASP GLU GLY ASP GLU VAL LYS PHE LYS SER TYR CYS SEQRES 15 A 190 LEU LYS HIS SER GLN ASN ARG GLN SEQRES 1 B 190 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 B 190 SER GLY SER SER ASP GLU ASP VAL ILE CYS ASP VAL CYS SEQRES 3 B 190 ARG SER PRO ASP SER GLU GLU GLY ASN ASP MET VAL PHE SEQRES 4 B 190 CYS ASP LYS CYS ASN VAL CYS VAL HIS GLN ALA CYS TYR SEQRES 5 B 190 GLY ILE LEU LYS VAL PRO GLU GLY SER TRP LEU CYS ARG SEQRES 6 B 190 SER CYS VAL LEU GLY ILE TYR PRO GLN CYS VAL LEU CYS SEQRES 7 B 190 PRO LYS LYS GLY GLY ALA LEU LYS THR THR LYS THR GLY SEQRES 8 B 190 THR LYS TRP ALA HIS VAL SER CYS ALA LEU TRP ILE PRO SEQRES 9 B 190 GLU VAL SER ILE ALA CYS PRO GLU ARG MET GLU PRO ILE SEQRES 10 B 190 THR LYS ILE SER HIS ILE PRO PRO SER ARG TRP ALA LEU SEQRES 11 B 190 VAL CYS ASN LEU CYS LYS LEU LYS THR GLY ALA CYS ILE SEQRES 12 B 190 GLN CYS SER ILE LYS SER CYS ILE THR ALA PHE HIS VAL SEQRES 13 B 190 THR CYS ALA PHE GLU HIS GLY LEU GLU MET LYS THR ILE SEQRES 14 B 190 LEU ASP GLU GLY ASP GLU VAL LYS PHE LYS SER TYR CYS SEQRES 15 B 190 LEU LYS HIS SER GLN ASN ARG GLN HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET ZN B 404 1 HET ZN B 405 1 HETNAM ZN ZINC ION FORMUL 3 ZN 10(ZN 2+) FORMUL 13 HOH *54(H2 O) HELIX 1 AA1 GLN A 229 GLY A 233 1 5 HELIX 2 AA2 CYS A 244 GLY A 250 1 7 HELIX 3 AA3 VAL A 277 ILE A 283 1 7 HELIX 4 AA4 LYS A 299 ILE A 303 5 5 HELIX 5 AA5 PRO A 304 ALA A 309 1 6 HELIX 6 AA6 HIS A 335 HIS A 342 1 8 HELIX 7 AA7 GLN B 229 GLY B 233 1 5 HELIX 8 AA8 CYS B 244 GLY B 250 1 7 HELIX 9 AA9 VAL B 277 ILE B 283 1 7 HELIX 10 AB1 LYS B 299 ILE B 303 5 5 HELIX 11 AB2 PRO B 304 LEU B 310 1 7 HELIX 12 AB3 HIS B 335 HIS B 342 1 8 SHEET 1 AA1 2 MET A 217 PHE A 219 0 SHEET 2 AA1 2 CYS A 226 HIS A 228 -1 O VAL A 227 N VAL A 218 SHEET 1 AA2 2 LEU A 265 THR A 267 0 SHEET 2 AA2 2 TRP A 274 HIS A 276 -1 O ALA A 275 N LYS A 266 SHEET 1 AA3 2 SER A 287 CYS A 290 0 SHEET 2 AA3 2 GLU A 295 THR A 298 -1 O THR A 298 N SER A 287 SHEET 1 AA4 2 ILE A 323 GLN A 324 0 SHEET 2 AA4 2 ALA A 333 PHE A 334 -1 O PHE A 334 N ILE A 323 SHEET 1 AA5 2 MET A 346 ILE A 349 0 SHEET 2 AA5 2 LYS A 357 SER A 360 -1 O LYS A 359 N LYS A 347 SHEET 1 AA6 2 MET B 217 PHE B 219 0 SHEET 2 AA6 2 CYS B 226 HIS B 228 -1 O VAL B 227 N VAL B 218 SHEET 1 AA7 2 LEU B 265 THR B 267 0 SHEET 2 AA7 2 TRP B 274 HIS B 276 -1 O ALA B 275 N LYS B 266 SHEET 1 AA8 2 SER B 287 ILE B 288 0 SHEET 2 AA8 2 ILE B 297 THR B 298 -1 O THR B 298 N SER B 287 SHEET 1 AA9 2 ILE B 323 GLN B 324 0 SHEET 2 AA9 2 ALA B 333 PHE B 334 -1 O PHE B 334 N ILE B 323 SHEET 1 AB1 2 MET B 346 ILE B 349 0 SHEET 2 AB1 2 LYS B 357 SER B 360 -1 O LYS B 359 N LYS B 347 LINK SG CYS A 203 ZN ZN A 403 1555 1555 2.19 LINK SG CYS A 206 ZN ZN A 403 1555 1555 2.52 LINK SG CYS A 220 ZN ZN A 405 1555 1555 2.41 LINK SG CYS A 223 ZN ZN A 405 1555 1555 2.23 LINK ND1 HIS A 228 ZN ZN A 403 1555 1555 2.07 LINK SG CYS A 231 ZN ZN A 403 1555 1555 2.39 LINK SG CYS A 244 ZN ZN A 405 1555 1555 2.22 LINK SG CYS A 247 ZN ZN A 405 1555 1555 2.35 LINK SG CYS A 255 ZN ZN A 401 1555 1555 2.26 LINK SG CYS A 258 ZN ZN A 401 1555 1555 2.22 LINK ND1 HIS A 276 ZN ZN A 401 1555 1555 2.23 LINK SG CYS A 279 ZN ZN A 401 1555 1555 2.28 LINK SG CYS A 312 ZN ZN A 404 1555 1555 2.49 LINK SG CYS A 315 ZN ZN A 404 1555 1555 2.52 LINK SG CYS A 325 ZN ZN A 402 1555 1555 2.25 LINK SG CYS A 330 ZN ZN A 402 1555 1555 2.22 LINK ND1 HIS A 335 ZN ZN A 404 1555 1555 1.94 LINK SG CYS A 338 ZN ZN A 404 1555 1555 2.37 LINK SG CYS A 362 ZN ZN A 402 1555 1555 2.36 LINK ND1 HIS A 365 ZN ZN A 402 1555 1555 2.10 LINK SG CYS B 203 ZN ZN B 404 1555 1555 2.48 LINK SG CYS B 206 ZN ZN B 404 1555 1555 2.52 LINK SG CYS B 220 ZN ZN B 403 1555 1555 2.38 LINK SG CYS B 223 ZN ZN B 403 1555 1555 2.34 LINK ND1 HIS B 228 ZN ZN B 404 1555 1555 1.84 LINK SG CYS B 231 ZN ZN B 404 1555 1555 2.36 LINK SG CYS B 244 ZN ZN B 403 1555 1555 2.16 LINK SG CYS B 247 ZN ZN B 403 1555 1555 2.31 LINK SG CYS B 255 ZN ZN B 401 1555 1555 2.24 LINK SG CYS B 258 ZN ZN B 401 1555 1555 2.36 LINK ND1 HIS B 276 ZN ZN B 401 1555 1555 2.13 LINK SG CYS B 279 ZN ZN B 401 1555 1555 2.32 LINK SG CYS B 312 ZN ZN B 405 1555 1555 2.36 LINK SG CYS B 315 ZN ZN B 405 1555 1555 2.37 LINK SG CYS B 325 ZN ZN B 402 1555 1555 2.26 LINK SG CYS B 330 ZN ZN B 402 1555 1555 2.36 LINK ND1 HIS B 335 ZN ZN B 405 1555 1555 2.05 LINK SG CYS B 338 ZN ZN B 405 1555 1555 2.32 LINK SG CYS B 362 ZN ZN B 402 1555 1555 2.31 LINK ND1 HIS B 365 ZN ZN B 402 1555 1555 2.07 CISPEP 1 GLU A 295 PRO A 296 0 -9.15 CISPEP 2 GLU B 295 PRO B 296 0 0.66 CRYST1 35.887 98.415 104.426 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027865 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009576 0.00000 CONECT 61 2578 CONECT 82 2578 CONECT 186 2580 CONECT 209 2580 CONECT 244 2578 CONECT 267 2578 CONECT 365 2580 CONECT 388 2580 CONECT 449 2576 CONECT 470 2576 CONECT 601 2576 CONECT 623 2576 CONECT 884 2579 CONECT 906 2579 CONECT 977 2577 CONECT 1012 2577 CONECT 1050 2579 CONECT 1073 2579 CONECT 1243 2577 CONECT 1267 2577 CONECT 1355 2584 CONECT 1376 2584 CONECT 1476 2583 CONECT 1495 2583 CONECT 1530 2584 CONECT 1553 2584 CONECT 1655 2583 CONECT 1678 2583 CONECT 1739 2581 CONECT 1760 2581 CONECT 1891 2581 CONECT 1913 2581 CONECT 2174 2585 CONECT 2196 2585 CONECT 2267 2582 CONECT 2302 2582 CONECT 2340 2585 CONECT 2363 2585 CONECT 2532 2582 CONECT 2556 2582 CONECT 2576 449 470 601 623 CONECT 2577 977 1012 1243 1267 CONECT 2578 61 82 244 267 CONECT 2579 884 906 1050 1073 CONECT 2580 186 209 365 388 CONECT 2581 1739 1760 1891 1913 CONECT 2582 2267 2302 2532 2556 CONECT 2583 1476 1495 1655 1678 CONECT 2584 1355 1376 1530 1553 CONECT 2585 2174 2196 2340 2363 MASTER 469 0 10 12 20 0 0 6 2629 2 50 30 END