data_11ZV # _entry.id 11ZV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.414 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 11ZV pdb_000011zv 10.2210/pdb11zv/pdb WWPDB D_1000306330 ? ? EMDB EMD-76232 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-05-13 ? 2 'EM metadata' 1 0 2026-05-13 ? 3 'Additional map' 1 0 2026-05-13 1 4 FSC 1 0 2026-05-13 ? 5 'Half map' 1 0 2026-05-13 1 6 'Half map' 1 0 2026-05-13 2 7 Image 1 0 2026-05-13 ? 8 Mask 1 0 2026-05-13 1 9 Mask 1 0 2026-05-13 2 10 'Primary map' 1 0 2026-05-13 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 FSC repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 Image repository 'Initial release' ? ? 8 8 Mask repository 'Initial release' ? ? 9 9 Mask repository 'Initial release' ? ? 10 10 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 11ZV _pdbx_database_status.recvd_initial_deposition_date 2026-03-21 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details ;Structure of the Porcine deltacoronavirus (PDCoV) receptor-binding domain bound to the RBD minibinder 11, the PD3 Fab, and the Kappa light chain nanobody (local refinement) ; _pdbx_database_related.db_id EMD-76232 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email dveesler@uw.edu _pdbx_contact_author.name_first David _pdbx_contact_author.name_last Veesler _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6019-8675 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Avery, N.G.' 1 ? 'Park, Y.J.' 2 ? 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' 3 ? 'Veesler, D.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 123 _citation.language ? _citation.page_first e2533456123 _citation.page_last e2533456123 _citation.title 'Computational design of an ultrapotent deltacoronavirus miniprotein inhibitor.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2533456123 _citation.pdbx_database_id_PubMed 42054371 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Avery, N.G.' 1 0009-0002-7231-9793 primary 'Yoshiyama, C.N.' 2 ? primary 'Taylor, A.L.' 3 ? primary 'Park, Y.J.' 4 0000-0003-2901-6949 primary 'Asarnow, D.' 5 ? primary 'Perruzza, L.' 6 ? primary 'Brown, J.T.' 7 ? primary 'Corti, D.' 8 0000-0002-5797-1364 primary 'Benigni, F.' 9 0000-0002-1974-5606 primary 'Starr, T.N.' 10 0000-0001-6713-6904 primary 'Veesler, D.' 11 0000-0002-6019-8675 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PDCoV IL121_2014 receptor binding domain' 19285.900 1 3.1.3.48 ? 'residues 302-415' ? 2 polymer man 'RBD minibinder 11' 20905.779 1 ? ? ? ? 3 branched man ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 910.823 1 ? ? ? ? 4 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 5 water nat water 18.015 46 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'R-PTP-S,Chick receptor tyrosine phosphatase alpha,CRYP alpha,CRYPalpha' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGILPSPGMPALLSLVSLLSVLLMGCVAETGTPELEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCT GCTMNLRTDTCSFDLSAVNNGMSFSQFCLSTESGACEMKIIVTYVWNYLLRQRLYVTAVEGQTHTGGGSGLNDIFEAQKI EWHEGGSHHHHHHHH ; ;MGILPSPGMPALLSLVSLLSVLLMGCVAETGTPELEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCT GCTMNLRTDTCSFDLSAVNNGMSFSQFCLSTESGACEMKIIVTYVWNYLLRQRLYVTAVEGQTHTGGGSGLNDIFEAQKI EWHEGGSHHHHHHHH ; A ? 2 'polypeptide(L)' no no ;MHHHHHHHHGGSLVPRGSGGSGLNDIFEAQKIEWHEGGSHMLTREEVQAIIDGHVIEVKYDSVEEFLEKYKGKISEETIE LIEKLIELTSKDPKLSRLPLIFMQMLDMFIEIMKDLKDRGITSEEDRKLLYDVFKERFEQWFDSFWPGEEEIKEIMLKIL DLLYNEDYEKIYEAEK ; ;MHHHHHHHHGGSLVPRGSGGSGLNDIFEAQKIEWHEGGSHMLTREEVQAIIDGHVIEVKYDSVEEFLEKYKGKISEETIE LIEKLIELTSKDPKLSRLPLIFMQMLDMFIEIMKDLKDRGITSEEDRKLLYDVFKERFEQWFDSFWPGEEEIKEIMLKIL DLLYNEDYEKIYEAEK ; B ? # _pdbx_entity_nonpoly.entity_id 5 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 ILE n 1 4 LEU n 1 5 PRO n 1 6 SER n 1 7 PRO n 1 8 GLY n 1 9 MET n 1 10 PRO n 1 11 ALA n 1 12 LEU n 1 13 LEU n 1 14 SER n 1 15 LEU n 1 16 VAL n 1 17 SER n 1 18 LEU n 1 19 LEU n 1 20 SER n 1 21 VAL n 1 22 LEU n 1 23 LEU n 1 24 MET n 1 25 GLY n 1 26 CYS n 1 27 VAL n 1 28 ALA n 1 29 GLU n 1 30 THR n 1 31 GLY n 1 32 THR n 1 33 PRO n 1 34 GLU n 1 35 LEU n 1 36 GLU n 1 37 VAL n 1 38 VAL n 1 39 GLN n 1 40 LEU n 1 41 ASN n 1 42 ILE n 1 43 SER n 1 44 ALA n 1 45 HIS n 1 46 MET n 1 47 ASP n 1 48 PHE n 1 49 GLY n 1 50 GLU n 1 51 ALA n 1 52 ARG n 1 53 LEU n 1 54 ASP n 1 55 SER n 1 56 VAL n 1 57 THR n 1 58 ILE n 1 59 ASN n 1 60 GLY n 1 61 ASN n 1 62 THR n 1 63 SER n 1 64 TYR n 1 65 CYS n 1 66 VAL n 1 67 THR n 1 68 LYS n 1 69 PRO n 1 70 TYR n 1 71 PHE n 1 72 ARG n 1 73 LEU n 1 74 GLU n 1 75 THR n 1 76 ASN n 1 77 PHE n 1 78 MET n 1 79 CYS n 1 80 THR n 1 81 GLY n 1 82 CYS n 1 83 THR n 1 84 MET n 1 85 ASN n 1 86 LEU n 1 87 ARG n 1 88 THR n 1 89 ASP n 1 90 THR n 1 91 CYS n 1 92 SER n 1 93 PHE n 1 94 ASP n 1 95 LEU n 1 96 SER n 1 97 ALA n 1 98 VAL n 1 99 ASN n 1 100 ASN n 1 101 GLY n 1 102 MET n 1 103 SER n 1 104 PHE n 1 105 SER n 1 106 GLN n 1 107 PHE n 1 108 CYS n 1 109 LEU n 1 110 SER n 1 111 THR n 1 112 GLU n 1 113 SER n 1 114 GLY n 1 115 ALA n 1 116 CYS n 1 117 GLU n 1 118 MET n 1 119 LYS n 1 120 ILE n 1 121 ILE n 1 122 VAL n 1 123 THR n 1 124 TYR n 1 125 VAL n 1 126 TRP n 1 127 ASN n 1 128 TYR n 1 129 LEU n 1 130 LEU n 1 131 ARG n 1 132 GLN n 1 133 ARG n 1 134 LEU n 1 135 TYR n 1 136 VAL n 1 137 THR n 1 138 ALA n 1 139 VAL n 1 140 GLU n 1 141 GLY n 1 142 GLN n 1 143 THR n 1 144 HIS n 1 145 THR n 1 146 GLY n 1 147 GLY n 1 148 GLY n 1 149 SER n 1 150 GLY n 1 151 LEU n 1 152 ASN n 1 153 ASP n 1 154 ILE n 1 155 PHE n 1 156 GLU n 1 157 ALA n 1 158 GLN n 1 159 LYS n 1 160 ILE n 1 161 GLU n 1 162 TRP n 1 163 HIS n 1 164 GLU n 1 165 GLY n 1 166 GLY n 1 167 SER n 1 168 HIS n 1 169 HIS n 1 170 HIS n 1 171 HIS n 1 172 HIS n 1 173 HIS n 1 174 HIS n 1 175 HIS n 2 1 MET n 2 2 HIS n 2 3 HIS n 2 4 HIS n 2 5 HIS n 2 6 HIS n 2 7 HIS n 2 8 HIS n 2 9 HIS n 2 10 GLY n 2 11 GLY n 2 12 SER n 2 13 LEU n 2 14 VAL n 2 15 PRO n 2 16 ARG n 2 17 GLY n 2 18 SER n 2 19 GLY n 2 20 GLY n 2 21 SER n 2 22 GLY n 2 23 LEU n 2 24 ASN n 2 25 ASP n 2 26 ILE n 2 27 PHE n 2 28 GLU n 2 29 ALA n 2 30 GLN n 2 31 LYS n 2 32 ILE n 2 33 GLU n 2 34 TRP n 2 35 HIS n 2 36 GLU n 2 37 GLY n 2 38 GLY n 2 39 SER n 2 40 HIS n 2 41 MET n 2 42 LEU n 2 43 THR n 2 44 ARG n 2 45 GLU n 2 46 GLU n 2 47 VAL n 2 48 GLN n 2 49 ALA n 2 50 ILE n 2 51 ILE n 2 52 ASP n 2 53 GLY n 2 54 HIS n 2 55 VAL n 2 56 ILE n 2 57 GLU n 2 58 VAL n 2 59 LYS n 2 60 TYR n 2 61 ASP n 2 62 SER n 2 63 VAL n 2 64 GLU n 2 65 GLU n 2 66 PHE n 2 67 LEU n 2 68 GLU n 2 69 LYS n 2 70 TYR n 2 71 LYS n 2 72 GLY n 2 73 LYS n 2 74 ILE n 2 75 SER n 2 76 GLU n 2 77 GLU n 2 78 THR n 2 79 ILE n 2 80 GLU n 2 81 LEU n 2 82 ILE n 2 83 GLU n 2 84 LYS n 2 85 LEU n 2 86 ILE n 2 87 GLU n 2 88 LEU n 2 89 THR n 2 90 SER n 2 91 LYS n 2 92 ASP n 2 93 PRO n 2 94 LYS n 2 95 LEU n 2 96 SER n 2 97 ARG n 2 98 LEU n 2 99 PRO n 2 100 LEU n 2 101 ILE n 2 102 PHE n 2 103 MET n 2 104 GLN n 2 105 MET n 2 106 LEU n 2 107 ASP n 2 108 MET n 2 109 PHE n 2 110 ILE n 2 111 GLU n 2 112 ILE n 2 113 MET n 2 114 LYS n 2 115 ASP n 2 116 LEU n 2 117 LYS n 2 118 ASP n 2 119 ARG n 2 120 GLY n 2 121 ILE n 2 122 THR n 2 123 SER n 2 124 GLU n 2 125 GLU n 2 126 ASP n 2 127 ARG n 2 128 LYS n 2 129 LEU n 2 130 LEU n 2 131 TYR n 2 132 ASP n 2 133 VAL n 2 134 PHE n 2 135 LYS n 2 136 GLU n 2 137 ARG n 2 138 PHE n 2 139 GLU n 2 140 GLN n 2 141 TRP n 2 142 PHE n 2 143 ASP n 2 144 SER n 2 145 PHE n 2 146 TRP n 2 147 PRO n 2 148 GLY n 2 149 GLU n 2 150 GLU n 2 151 GLU n 2 152 ILE n 2 153 LYS n 2 154 GLU n 2 155 ILE n 2 156 MET n 2 157 LEU n 2 158 LYS n 2 159 ILE n 2 160 LEU n 2 161 ASP n 2 162 LEU n 2 163 LEU n 2 164 TYR n 2 165 ASN n 2 166 GLU n 2 167 ASP n 2 168 TYR n 2 169 GLU n 2 170 LYS n 2 171 ILE n 2 172 TYR n 2 173 GLU n 2 174 ALA n 2 175 GLU n 2 176 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 32 ? ? PTPRS ? ? ? ? ? ? 'Porcine deltacoronavirus' 1586324 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample 'Biological sequence' 33 175 ? ? ? ? ? ? ? ? ? 'Porcine deltacoronavirus' 1586324 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 176 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 'DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1' WURCS PDB2Glycan 1.1.0 3 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE ? 4 4 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 5 4 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 6 4 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 3 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 3 4 MAN C1 O1 3 BMA O3 HO3 sing ? 4 3 5 MAN C1 O1 3 BMA O6 HO6 sing ? 5 4 2 NAG C1 O1 1 NAG O4 HO4 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 271 ? ? ? A . n A 1 2 GLY 2 272 ? ? ? A . n A 1 3 ILE 3 273 ? ? ? A . n A 1 4 LEU 4 274 ? ? ? A . n A 1 5 PRO 5 275 ? ? ? A . n A 1 6 SER 6 276 ? ? ? A . n A 1 7 PRO 7 277 ? ? ? A . n A 1 8 GLY 8 278 ? ? ? A . n A 1 9 MET 9 279 ? ? ? A . n A 1 10 PRO 10 280 ? ? ? A . n A 1 11 ALA 11 281 ? ? ? A . n A 1 12 LEU 12 282 ? ? ? A . n A 1 13 LEU 13 283 ? ? ? A . n A 1 14 SER 14 284 ? ? ? A . n A 1 15 LEU 15 285 ? ? ? A . n A 1 16 VAL 16 286 ? ? ? A . n A 1 17 SER 17 287 ? ? ? A . n A 1 18 LEU 18 288 ? ? ? A . n A 1 19 LEU 19 289 ? ? ? A . n A 1 20 SER 20 290 ? ? ? A . n A 1 21 VAL 21 291 ? ? ? A . n A 1 22 LEU 22 292 ? ? ? A . n A 1 23 LEU 23 293 ? ? ? A . n A 1 24 MET 24 294 ? ? ? A . n A 1 25 GLY 25 295 ? ? ? A . n A 1 26 CYS 26 296 ? ? ? A . n A 1 27 VAL 27 297 ? ? ? A . n A 1 28 ALA 28 298 ? ? ? A . n A 1 29 GLU 29 299 ? ? ? A . n A 1 30 THR 30 300 ? ? ? A . n A 1 31 GLY 31 301 ? ? ? A . n A 1 32 THR 32 302 ? ? ? A . n A 1 33 PRO 33 303 ? ? ? A . n A 1 34 GLU 34 304 ? ? ? A . n A 1 35 LEU 35 305 305 LEU LEU A . n A 1 36 GLU 36 306 306 GLU GLU A . n A 1 37 VAL 37 307 307 VAL VAL A . n A 1 38 VAL 38 308 308 VAL VAL A . n A 1 39 GLN 39 309 309 GLN GLN A . n A 1 40 LEU 40 310 310 LEU LEU A . n A 1 41 ASN 41 311 311 ASN ASN A . n A 1 42 ILE 42 312 312 ILE ILE A . n A 1 43 SER 43 313 313 SER SER A . n A 1 44 ALA 44 314 314 ALA ALA A . n A 1 45 HIS 45 315 315 HIS HIS A . n A 1 46 MET 46 316 316 MET MET A . n A 1 47 ASP 47 317 317 ASP ASP A . n A 1 48 PHE 48 318 318 PHE PHE A . n A 1 49 GLY 49 319 319 GLY GLY A . n A 1 50 GLU 50 320 320 GLU GLU A . n A 1 51 ALA 51 321 321 ALA ALA A . n A 1 52 ARG 52 322 322 ARG ARG A . n A 1 53 LEU 53 323 323 LEU LEU A . n A 1 54 ASP 54 324 324 ASP ASP A . n A 1 55 SER 55 325 325 SER SER A . n A 1 56 VAL 56 326 326 VAL VAL A . n A 1 57 THR 57 327 327 THR THR A . n A 1 58 ILE 58 328 328 ILE ILE A . n A 1 59 ASN 59 329 329 ASN ASN A . n A 1 60 GLY 60 330 330 GLY GLY A . n A 1 61 ASN 61 331 331 ASN ASN A . n A 1 62 THR 62 332 332 THR THR A . n A 1 63 SER 63 333 333 SER SER A . n A 1 64 TYR 64 334 334 TYR TYR A . n A 1 65 CYS 65 335 335 CYS CYS A . n A 1 66 VAL 66 336 336 VAL VAL A . n A 1 67 THR 67 337 337 THR THR A . n A 1 68 LYS 68 338 338 LYS LYS A . n A 1 69 PRO 69 339 339 PRO PRO A . n A 1 70 TYR 70 340 340 TYR TYR A . n A 1 71 PHE 71 341 341 PHE PHE A . n A 1 72 ARG 72 342 342 ARG ARG A . n A 1 73 LEU 73 343 343 LEU LEU A . n A 1 74 GLU 74 344 344 GLU GLU A . n A 1 75 THR 75 345 345 THR THR A . n A 1 76 ASN 76 346 346 ASN ASN A . n A 1 77 PHE 77 347 347 PHE PHE A . n A 1 78 MET 78 348 348 MET MET A . n A 1 79 CYS 79 349 349 CYS CYS A . n A 1 80 THR 80 350 350 THR THR A . n A 1 81 GLY 81 351 351 GLY GLY A . n A 1 82 CYS 82 352 352 CYS CYS A . n A 1 83 THR 83 353 353 THR THR A . n A 1 84 MET 84 354 354 MET MET A . n A 1 85 ASN 85 355 355 ASN ASN A . n A 1 86 LEU 86 356 356 LEU LEU A . n A 1 87 ARG 87 357 357 ARG ARG A . n A 1 88 THR 88 358 358 THR THR A . n A 1 89 ASP 89 359 359 ASP ASP A . n A 1 90 THR 90 360 360 THR THR A . n A 1 91 CYS 91 361 361 CYS CYS A . n A 1 92 SER 92 362 362 SER SER A . n A 1 93 PHE 93 363 363 PHE PHE A . n A 1 94 ASP 94 364 364 ASP ASP A . n A 1 95 LEU 95 365 365 LEU LEU A . n A 1 96 SER 96 366 366 SER SER A . n A 1 97 ALA 97 367 367 ALA ALA A . n A 1 98 VAL 98 368 368 VAL VAL A . n A 1 99 ASN 99 369 369 ASN ASN A . n A 1 100 ASN 100 370 370 ASN ASN A . n A 1 101 GLY 101 371 371 GLY GLY A . n A 1 102 MET 102 372 372 MET MET A . n A 1 103 SER 103 373 373 SER SER A . n A 1 104 PHE 104 374 374 PHE PHE A . n A 1 105 SER 105 375 375 SER SER A . n A 1 106 GLN 106 376 376 GLN GLN A . n A 1 107 PHE 107 377 377 PHE PHE A . n A 1 108 CYS 108 378 378 CYS CYS A . n A 1 109 LEU 109 379 379 LEU LEU A . n A 1 110 SER 110 380 380 SER SER A . n A 1 111 THR 111 381 381 THR THR A . n A 1 112 GLU 112 382 382 GLU GLU A . n A 1 113 SER 113 383 383 SER SER A . n A 1 114 GLY 114 384 384 GLY GLY A . n A 1 115 ALA 115 385 385 ALA ALA A . n A 1 116 CYS 116 386 386 CYS CYS A . n A 1 117 GLU 117 387 387 GLU GLU A . n A 1 118 MET 118 388 388 MET MET A . n A 1 119 LYS 119 389 389 LYS LYS A . n A 1 120 ILE 120 390 390 ILE ILE A . n A 1 121 ILE 121 391 391 ILE ILE A . n A 1 122 VAL 122 392 392 VAL VAL A . n A 1 123 THR 123 393 393 THR THR A . n A 1 124 TYR 124 394 394 TYR TYR A . n A 1 125 VAL 125 395 395 VAL VAL A . n A 1 126 TRP 126 396 396 TRP TRP A . n A 1 127 ASN 127 397 397 ASN ASN A . n A 1 128 TYR 128 398 398 TYR TYR A . n A 1 129 LEU 129 399 399 LEU LEU A . n A 1 130 LEU 130 400 400 LEU LEU A . n A 1 131 ARG 131 401 401 ARG ARG A . n A 1 132 GLN 132 402 402 GLN GLN A . n A 1 133 ARG 133 403 403 ARG ARG A . n A 1 134 LEU 134 404 404 LEU LEU A . n A 1 135 TYR 135 405 405 TYR TYR A . n A 1 136 VAL 136 406 406 VAL VAL A . n A 1 137 THR 137 407 407 THR THR A . n A 1 138 ALA 138 408 408 ALA ALA A . n A 1 139 VAL 139 409 409 VAL VAL A . n A 1 140 GLU 140 410 410 GLU GLU A . n A 1 141 GLY 141 411 411 GLY GLY A . n A 1 142 GLN 142 412 412 GLN GLN A . n A 1 143 THR 143 413 413 THR THR A . n A 1 144 HIS 144 414 414 HIS HIS A . n A 1 145 THR 145 415 415 THR THR A . n A 1 146 GLY 146 416 416 GLY GLY A . n A 1 147 GLY 147 417 417 GLY GLY A . n A 1 148 GLY 148 418 ? ? ? A . n A 1 149 SER 149 419 ? ? ? A . n A 1 150 GLY 150 420 ? ? ? A . n A 1 151 LEU 151 421 ? ? ? A . n A 1 152 ASN 152 422 ? ? ? A . n A 1 153 ASP 153 423 ? ? ? A . n A 1 154 ILE 154 424 ? ? ? A . n A 1 155 PHE 155 425 ? ? ? A . n A 1 156 GLU 156 426 ? ? ? A . n A 1 157 ALA 157 427 ? ? ? A . n A 1 158 GLN 158 428 ? ? ? A . n A 1 159 LYS 159 429 ? ? ? A . n A 1 160 ILE 160 430 ? ? ? A . n A 1 161 GLU 161 431 ? ? ? A . n A 1 162 TRP 162 432 ? ? ? A . n A 1 163 HIS 163 433 ? ? ? A . n A 1 164 GLU 164 434 ? ? ? A . n A 1 165 GLY 165 435 ? ? ? A . n A 1 166 GLY 166 436 ? ? ? A . n A 1 167 SER 167 437 ? ? ? A . n A 1 168 HIS 168 438 ? ? ? A . n A 1 169 HIS 169 439 ? ? ? A . n A 1 170 HIS 170 440 ? ? ? A . n A 1 171 HIS 171 441 ? ? ? A . n A 1 172 HIS 172 442 ? ? ? A . n A 1 173 HIS 173 443 ? ? ? A . n A 1 174 HIS 174 444 ? ? ? A . n A 1 175 HIS 175 445 ? ? ? A . n B 2 1 MET 1 -38 ? ? ? B . n B 2 2 HIS 2 -37 ? ? ? B . n B 2 3 HIS 3 -36 ? ? ? B . n B 2 4 HIS 4 -35 ? ? ? B . n B 2 5 HIS 5 -34 ? ? ? B . n B 2 6 HIS 6 -33 ? ? ? B . n B 2 7 HIS 7 -32 ? ? ? B . n B 2 8 HIS 8 -31 ? ? ? B . n B 2 9 HIS 9 -30 ? ? ? B . n B 2 10 GLY 10 -29 ? ? ? B . n B 2 11 GLY 11 -28 ? ? ? B . n B 2 12 SER 12 -27 ? ? ? B . n B 2 13 LEU 13 -26 ? ? ? B . n B 2 14 VAL 14 -25 ? ? ? B . n B 2 15 PRO 15 -24 ? ? ? B . n B 2 16 ARG 16 -23 ? ? ? B . n B 2 17 GLY 17 -22 ? ? ? B . n B 2 18 SER 18 -21 ? ? ? B . n B 2 19 GLY 19 -20 ? ? ? B . n B 2 20 GLY 20 -19 ? ? ? B . n B 2 21 SER 21 -18 ? ? ? B . n B 2 22 GLY 22 -17 ? ? ? B . n B 2 23 LEU 23 -16 ? ? ? B . n B 2 24 ASN 24 -15 ? ? ? B . n B 2 25 ASP 25 -14 ? ? ? B . n B 2 26 ILE 26 -13 ? ? ? B . n B 2 27 PHE 27 -12 ? ? ? B . n B 2 28 GLU 28 -11 ? ? ? B . n B 2 29 ALA 29 -10 ? ? ? B . n B 2 30 GLN 30 -9 ? ? ? B . n B 2 31 LYS 31 -8 ? ? ? B . n B 2 32 ILE 32 -7 ? ? ? B . n B 2 33 GLU 33 -6 ? ? ? B . n B 2 34 TRP 34 -5 ? ? ? B . n B 2 35 HIS 35 -4 ? ? ? B . n B 2 36 GLU 36 -3 ? ? ? B . n B 2 37 GLY 37 -2 ? ? ? B . n B 2 38 GLY 38 -1 ? ? ? B . n B 2 39 SER 39 0 ? ? ? B . n B 2 40 HIS 40 1 ? ? ? B . n B 2 41 MET 41 2 ? ? ? B . n B 2 42 LEU 42 3 3 LEU LEU B . n B 2 43 THR 43 4 4 THR THR B . n B 2 44 ARG 44 5 5 ARG ARG B . n B 2 45 GLU 45 6 6 GLU GLU B . n B 2 46 GLU 46 7 7 GLU GLU B . n B 2 47 VAL 47 8 8 VAL VAL B . n B 2 48 GLN 48 9 9 GLN GLN B . n B 2 49 ALA 49 10 10 ALA ALA B . n B 2 50 ILE 50 11 11 ILE ILE B . n B 2 51 ILE 51 12 12 ILE ILE B . n B 2 52 ASP 52 13 13 ASP ASP B . n B 2 53 GLY 53 14 14 GLY GLY B . n B 2 54 HIS 54 15 15 HIS HIS B . n B 2 55 VAL 55 16 16 VAL VAL B . n B 2 56 ILE 56 17 17 ILE ILE B . n B 2 57 GLU 57 18 18 GLU GLU B . n B 2 58 VAL 58 19 19 VAL VAL B . n B 2 59 LYS 59 20 20 LYS LYS B . n B 2 60 TYR 60 21 21 TYR TYR B . n B 2 61 ASP 61 22 22 ASP ASP B . n B 2 62 SER 62 23 23 SER SER B . n B 2 63 VAL 63 24 24 VAL VAL B . n B 2 64 GLU 64 25 25 GLU GLU B . n B 2 65 GLU 65 26 26 GLU GLU B . n B 2 66 PHE 66 27 27 PHE PHE B . n B 2 67 LEU 67 28 28 LEU LEU B . n B 2 68 GLU 68 29 29 GLU GLU B . n B 2 69 LYS 69 30 30 LYS LYS B . n B 2 70 TYR 70 31 31 TYR TYR B . n B 2 71 LYS 71 32 32 LYS LYS B . n B 2 72 GLY 72 33 33 GLY GLY B . n B 2 73 LYS 73 34 34 LYS LYS B . n B 2 74 ILE 74 35 35 ILE ILE B . n B 2 75 SER 75 36 36 SER SER B . n B 2 76 GLU 76 37 37 GLU GLU B . n B 2 77 GLU 77 38 38 GLU GLU B . n B 2 78 THR 78 39 39 THR THR B . n B 2 79 ILE 79 40 40 ILE ILE B . n B 2 80 GLU 80 41 41 GLU GLU B . n B 2 81 LEU 81 42 42 LEU LEU B . n B 2 82 ILE 82 43 43 ILE ILE B . n B 2 83 GLU 83 44 44 GLU GLU B . n B 2 84 LYS 84 45 45 LYS LYS B . n B 2 85 LEU 85 46 46 LEU LEU B . n B 2 86 ILE 86 47 47 ILE ILE B . n B 2 87 GLU 87 48 48 GLU GLU B . n B 2 88 LEU 88 49 49 LEU LEU B . n B 2 89 THR 89 50 50 THR THR B . n B 2 90 SER 90 51 51 SER SER B . n B 2 91 LYS 91 52 52 LYS LYS B . n B 2 92 ASP 92 53 53 ASP ASP B . n B 2 93 PRO 93 54 54 PRO PRO B . n B 2 94 LYS 94 55 55 LYS LYS B . n B 2 95 LEU 95 56 56 LEU LEU B . n B 2 96 SER 96 57 57 SER SER B . n B 2 97 ARG 97 58 58 ARG ARG B . n B 2 98 LEU 98 59 59 LEU LEU B . n B 2 99 PRO 99 60 60 PRO PRO B . n B 2 100 LEU 100 61 61 LEU LEU B . n B 2 101 ILE 101 62 62 ILE ILE B . n B 2 102 PHE 102 63 63 PHE PHE B . n B 2 103 MET 103 64 64 MET MET B . n B 2 104 GLN 104 65 65 GLN GLN B . n B 2 105 MET 105 66 66 MET MET B . n B 2 106 LEU 106 67 67 LEU LEU B . n B 2 107 ASP 107 68 68 ASP ASP B . n B 2 108 MET 108 69 69 MET MET B . n B 2 109 PHE 109 70 70 PHE PHE B . n B 2 110 ILE 110 71 71 ILE ILE B . n B 2 111 GLU 111 72 72 GLU GLU B . n B 2 112 ILE 112 73 73 ILE ILE B . n B 2 113 MET 113 74 74 MET MET B . n B 2 114 LYS 114 75 75 LYS LYS B . n B 2 115 ASP 115 76 76 ASP ASP B . n B 2 116 LEU 116 77 77 LEU LEU B . n B 2 117 LYS 117 78 78 LYS LYS B . n B 2 118 ASP 118 79 79 ASP ASP B . n B 2 119 ARG 119 80 80 ARG ARG B . n B 2 120 GLY 120 81 81 GLY GLY B . n B 2 121 ILE 121 82 82 ILE ILE B . n B 2 122 THR 122 83 83 THR THR B . n B 2 123 SER 123 84 84 SER SER B . n B 2 124 GLU 124 85 85 GLU GLU B . n B 2 125 GLU 125 86 86 GLU GLU B . n B 2 126 ASP 126 87 87 ASP ASP B . n B 2 127 ARG 127 88 88 ARG ARG B . n B 2 128 LYS 128 89 89 LYS LYS B . n B 2 129 LEU 129 90 90 LEU LEU B . n B 2 130 LEU 130 91 91 LEU LEU B . n B 2 131 TYR 131 92 92 TYR TYR B . n B 2 132 ASP 132 93 93 ASP ASP B . n B 2 133 VAL 133 94 94 VAL VAL B . n B 2 134 PHE 134 95 95 PHE PHE B . n B 2 135 LYS 135 96 96 LYS LYS B . n B 2 136 GLU 136 97 97 GLU GLU B . n B 2 137 ARG 137 98 98 ARG ARG B . n B 2 138 PHE 138 99 99 PHE PHE B . n B 2 139 GLU 139 100 100 GLU GLU B . n B 2 140 GLN 140 101 101 GLN GLN B . n B 2 141 TRP 141 102 102 TRP TRP B . n B 2 142 PHE 142 103 103 PHE PHE B . n B 2 143 ASP 143 104 104 ASP ASP B . n B 2 144 SER 144 105 105 SER SER B . n B 2 145 PHE 145 106 106 PHE PHE B . n B 2 146 TRP 146 107 107 TRP TRP B . n B 2 147 PRO 147 108 108 PRO PRO B . n B 2 148 GLY 148 109 109 GLY GLY B . n B 2 149 GLU 149 110 110 GLU GLU B . n B 2 150 GLU 150 111 111 GLU GLU B . n B 2 151 GLU 151 112 112 GLU GLU B . n B 2 152 ILE 152 113 113 ILE ILE B . n B 2 153 LYS 153 114 114 LYS LYS B . n B 2 154 GLU 154 115 115 GLU GLU B . n B 2 155 ILE 155 116 116 ILE ILE B . n B 2 156 MET 156 117 117 MET MET B . n B 2 157 LEU 157 118 118 LEU LEU B . n B 2 158 LYS 158 119 119 LYS LYS B . n B 2 159 ILE 159 120 120 ILE ILE B . n B 2 160 LEU 160 121 121 LEU LEU B . n B 2 161 ASP 161 122 122 ASP ASP B . n B 2 162 LEU 162 123 123 LEU LEU B . n B 2 163 LEU 163 124 124 LEU LEU B . n B 2 164 TYR 164 125 125 TYR TYR B . n B 2 165 ASN 165 126 126 ASN ASN B . n B 2 166 GLU 166 127 127 GLU GLU B . n B 2 167 ASP 167 128 128 ASP ASP B . n B 2 168 TYR 168 129 129 TYR TYR B . n B 2 169 GLU 169 130 ? ? ? B . n B 2 170 LYS 170 131 ? ? ? B . n B 2 171 ILE 171 132 ? ? ? B . n B 2 172 TYR 172 133 ? ? ? B . n B 2 173 GLU 173 134 ? ? ? B . n B 2 174 ALA 174 135 ? ? ? B . n B 2 175 GLU 175 136 ? ? ? B . n B 2 176 LYS 176 137 ? ? ? B . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 3 NAG 1 C NAG 1 A NAG 418 n C 3 NAG 2 C NAG 2 A NAG 419 n C 3 BMA 3 C BMA 3 A BMA 420 n C 3 MAN 4 C MAN 4 A MAN 423 n C 3 MAN 5 C MAN 5 A MAN 424 n D 4 NAG 1 D NAG 1 A NAG 421 n D 4 NAG 2 D NAG 2 A NAG 422 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HOH 1 501 453 HOH HOH A . E 5 HOH 2 502 455 HOH HOH A . E 5 HOH 3 503 439 HOH HOH A . E 5 HOH 4 504 462 HOH HOH A . E 5 HOH 5 505 478 HOH HOH A . E 5 HOH 6 506 440 HOH HOH A . E 5 HOH 7 507 461 HOH HOH A . E 5 HOH 8 508 479 HOH HOH A . E 5 HOH 9 509 448 HOH HOH A . E 5 HOH 10 510 477 HOH HOH A . E 5 HOH 11 511 463 HOH HOH A . E 5 HOH 12 512 438 HOH HOH A . E 5 HOH 13 513 470 HOH HOH A . E 5 HOH 14 514 445 HOH HOH A . E 5 HOH 15 515 443 HOH HOH A . E 5 HOH 16 516 435 HOH HOH A . E 5 HOH 17 517 466 HOH HOH A . E 5 HOH 18 518 436 HOH HOH A . E 5 HOH 19 519 481 HOH HOH A . E 5 HOH 20 520 452 HOH HOH A . E 5 HOH 21 521 456 HOH HOH A . E 5 HOH 22 522 449 HOH HOH A . E 5 HOH 23 523 486 HOH HOH A . E 5 HOH 24 524 483 HOH HOH A . E 5 HOH 25 525 450 HOH HOH A . E 5 HOH 26 526 446 HOH HOH A . E 5 HOH 27 527 444 HOH HOH A . E 5 HOH 28 528 427 HOH HOH A . E 5 HOH 29 529 460 HOH HOH A . E 5 HOH 30 530 437 HOH HOH A . E 5 HOH 31 531 487 HOH HOH A . E 5 HOH 32 532 454 HOH HOH A . F 5 HOH 1 201 167 HOH HOH B . F 5 HOH 2 202 147 HOH HOH B . F 5 HOH 3 203 144 HOH HOH B . F 5 HOH 4 204 177 HOH HOH B . F 5 HOH 5 205 145 HOH HOH B . F 5 HOH 6 206 164 HOH HOH B . F 5 HOH 7 207 161 HOH HOH B . F 5 HOH 8 208 138 HOH HOH B . F 5 HOH 9 209 139 HOH HOH B . F 5 HOH 10 210 137 HOH HOH B . F 5 HOH 11 211 148 HOH HOH B . F 5 HOH 12 212 172 HOH HOH B . F 5 HOH 13 213 178 HOH HOH B . F 5 HOH 14 214 162 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 313 ? OG ? A SER 43 OG 2 1 Y 1 A SER 373 ? OG ? A SER 103 OG 3 1 Y 1 A SER 383 ? OG ? A SER 113 OG 4 1 Y 1 B LEU 3 ? CG ? B LEU 42 CG 5 1 Y 1 B LEU 3 ? CD1 ? B LEU 42 CD1 6 1 Y 1 B LEU 3 ? CD2 ? B LEU 42 CD2 7 1 Y 1 B THR 4 ? OG1 ? B THR 43 OG1 8 1 Y 1 B THR 4 ? CG2 ? B THR 43 CG2 9 1 Y 1 B GLU 6 ? CG ? B GLU 45 CG 10 1 Y 1 B GLU 6 ? CD ? B GLU 45 CD 11 1 Y 1 B GLU 6 ? OE1 ? B GLU 45 OE1 12 1 Y 1 B GLU 6 ? OE2 ? B GLU 45 OE2 13 1 Y 1 B GLU 7 ? CG ? B GLU 46 CG 14 1 Y 1 B GLU 7 ? CD ? B GLU 46 CD 15 1 Y 1 B GLU 7 ? OE1 ? B GLU 46 OE1 16 1 Y 1 B GLU 7 ? OE2 ? B GLU 46 OE2 17 1 Y 1 B ASP 22 ? CG ? B ASP 61 CG 18 1 Y 1 B ASP 22 ? OD1 ? B ASP 61 OD1 19 1 Y 1 B ASP 22 ? OD2 ? B ASP 61 OD2 20 1 Y 1 B SER 23 ? OG ? B SER 62 OG 21 1 Y 1 B GLU 29 ? CG ? B GLU 68 CG 22 1 Y 1 B GLU 29 ? CD ? B GLU 68 CD 23 1 Y 1 B GLU 29 ? OE1 ? B GLU 68 OE1 24 1 Y 1 B GLU 29 ? OE2 ? B GLU 68 OE2 25 1 Y 1 B LYS 32 ? CG ? B LYS 71 CG 26 1 Y 1 B LYS 32 ? CD ? B LYS 71 CD 27 1 Y 1 B LYS 32 ? CE ? B LYS 71 CE 28 1 Y 1 B LYS 32 ? NZ ? B LYS 71 NZ 29 1 Y 1 B SER 36 ? OG ? B SER 75 OG 30 1 Y 1 B GLU 37 ? CG ? B GLU 76 CG 31 1 Y 1 B GLU 37 ? CD ? B GLU 76 CD 32 1 Y 1 B GLU 37 ? OE1 ? B GLU 76 OE1 33 1 Y 1 B GLU 37 ? OE2 ? B GLU 76 OE2 34 1 Y 1 B GLU 38 ? CG ? B GLU 77 CG 35 1 Y 1 B GLU 38 ? CD ? B GLU 77 CD 36 1 Y 1 B GLU 38 ? OE1 ? B GLU 77 OE1 37 1 Y 1 B GLU 38 ? OE2 ? B GLU 77 OE2 38 1 Y 1 B GLU 41 ? CG ? B GLU 80 CG 39 1 Y 1 B GLU 41 ? CD ? B GLU 80 CD 40 1 Y 1 B GLU 41 ? OE1 ? B GLU 80 OE1 41 1 Y 1 B GLU 41 ? OE2 ? B GLU 80 OE2 42 1 Y 1 B GLU 48 ? CG ? B GLU 87 CG 43 1 Y 1 B GLU 48 ? CD ? B GLU 87 CD 44 1 Y 1 B GLU 48 ? OE1 ? B GLU 87 OE1 45 1 Y 1 B GLU 48 ? OE2 ? B GLU 87 OE2 46 1 Y 1 B SER 51 ? OG ? B SER 90 OG 47 1 Y 1 B LYS 52 ? CG ? B LYS 91 CG 48 1 Y 1 B LYS 52 ? CD ? B LYS 91 CD 49 1 Y 1 B LYS 52 ? CE ? B LYS 91 CE 50 1 Y 1 B LYS 52 ? NZ ? B LYS 91 NZ 51 1 Y 1 B ASP 53 ? CG ? B ASP 92 CG 52 1 Y 1 B ASP 53 ? OD1 ? B ASP 92 OD1 53 1 Y 1 B ASP 53 ? OD2 ? B ASP 92 OD2 54 1 Y 1 B LYS 55 ? CG ? B LYS 94 CG 55 1 Y 1 B LYS 55 ? CD ? B LYS 94 CD 56 1 Y 1 B LYS 55 ? CE ? B LYS 94 CE 57 1 Y 1 B LYS 55 ? NZ ? B LYS 94 NZ 58 1 Y 1 B SER 57 ? OG ? B SER 96 OG 59 1 Y 1 B THR 83 ? OG1 ? B THR 122 OG1 60 1 Y 1 B THR 83 ? CG2 ? B THR 122 CG2 61 1 Y 1 B SER 84 ? OG ? B SER 123 OG 62 1 Y 1 B GLU 85 ? CG ? B GLU 124 CG 63 1 Y 1 B GLU 85 ? CD ? B GLU 124 CD 64 1 Y 1 B GLU 85 ? OE1 ? B GLU 124 OE1 65 1 Y 1 B GLU 85 ? OE2 ? B GLU 124 OE2 66 1 Y 1 B GLU 86 ? CG ? B GLU 125 CG 67 1 Y 1 B GLU 86 ? CD ? B GLU 125 CD 68 1 Y 1 B GLU 86 ? OE1 ? B GLU 125 OE1 69 1 Y 1 B GLU 86 ? OE2 ? B GLU 125 OE2 70 1 Y 1 B GLU 111 ? CG ? B GLU 150 CG 71 1 Y 1 B GLU 111 ? CD ? B GLU 150 CD 72 1 Y 1 B GLU 111 ? OE1 ? B GLU 150 OE1 73 1 Y 1 B GLU 111 ? OE2 ? B GLU 150 OE2 74 1 Y 1 B GLU 112 ? CG ? B GLU 151 CG 75 1 Y 1 B GLU 112 ? CD ? B GLU 151 CD 76 1 Y 1 B GLU 112 ? OE1 ? B GLU 151 OE1 77 1 Y 1 B GLU 112 ? OE2 ? B GLU 151 OE2 78 1 Y 1 B GLU 115 ? CG ? B GLU 154 CG 79 1 Y 1 B GLU 115 ? CD ? B GLU 154 CD 80 1 Y 1 B GLU 115 ? OE1 ? B GLU 154 OE1 81 1 Y 1 B GLU 115 ? OE2 ? B GLU 154 OE2 82 1 Y 1 B GLU 127 ? CG ? B GLU 166 CG 83 1 Y 1 B GLU 127 ? CD ? B GLU 166 CD 84 1 Y 1 B GLU 127 ? OE1 ? B GLU 166 OE1 85 1 Y 1 B GLU 127 ? OE2 ? B GLU 166 OE2 86 1 Y 1 B TYR 129 ? CG ? B TYR 168 CG 87 1 Y 1 B TYR 129 ? CD1 ? B TYR 168 CD1 88 1 Y 1 B TYR 129 ? CD2 ? B TYR 168 CD2 89 1 Y 1 B TYR 129 ? CE1 ? B TYR 168 CE1 90 1 Y 1 B TYR 129 ? CE2 ? B TYR 168 CE2 91 1 Y 1 B TYR 129 ? CZ ? B TYR 168 CZ 92 1 Y 1 B TYR 129 ? OH ? B TYR 168 OH # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 11ZV _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 11ZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 11ZV _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 11ZV _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.84 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 2000 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.694 ? 2706 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 12.951 ? 789 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.070 ? 336 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.007 ? 329 ? f_plane_restr ? ? ? # _struct.entry_id 11ZV _struct.title ;Structure of the Porcine deltacoronavirus (PDCoV) receptor-binding domain bound to the RBD minibinder 11, the PD3 Fab, and the Kappa light chain nanobody (local refinement) ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 11ZV _struct_keywords.text ;porcine deltacoronavirus, minibinder, protein design, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, VIRAL PROTEIN ; _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP PTPRS_CHICK F1NWE3 ? 1 MRILPSPGMPALLSLVSLLSVLLMGCVAESPP 1 2 UNP W8Q9Y7_9NIDO W8Q9Y7 ? 1 ;LPELEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCTGCTMNLRTDTCSFDLSAVNNGMSFSQFCLST ESGACEMKIIVTYVWNYLLRQRLYVTAVEGQTHTG ; 302 3 PDB 11ZV 11ZV ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 11ZV A 1 ? 32 ? F1NWE3 1 ? 32 ? 271 302 2 2 11ZV A 33 ? 146 ? W8Q9Y7 303 ? 416 ? 303 416 3 3 11ZV B 1 ? 176 ? 11ZV -38 ? 137 ? -38 137 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 11ZV GLY A 2 ? UNP F1NWE3 ARG 2 conflict 272 1 1 11ZV THR A 30 ? UNP F1NWE3 SER 30 conflict 300 2 1 11ZV GLY A 31 ? UNP F1NWE3 PRO 31 conflict 301 3 1 11ZV THR A 32 ? UNP F1NWE3 PRO 32 conflict 302 4 2 11ZV GLY A 147 ? UNP W8Q9Y7 ? ? linker 417 5 2 11ZV GLY A 148 ? UNP W8Q9Y7 ? ? linker 418 6 2 11ZV SER A 149 ? UNP W8Q9Y7 ? ? linker 419 7 2 11ZV GLY A 150 ? UNP W8Q9Y7 ? ? insertion 420 8 2 11ZV LEU A 151 ? UNP W8Q9Y7 ? ? insertion 421 9 2 11ZV ASN A 152 ? UNP W8Q9Y7 ? ? insertion 422 10 2 11ZV ASP A 153 ? UNP W8Q9Y7 ? ? insertion 423 11 2 11ZV ILE A 154 ? UNP W8Q9Y7 ? ? insertion 424 12 2 11ZV PHE A 155 ? UNP W8Q9Y7 ? ? insertion 425 13 2 11ZV GLU A 156 ? UNP W8Q9Y7 ? ? insertion 426 14 2 11ZV ALA A 157 ? UNP W8Q9Y7 ? ? insertion 427 15 2 11ZV GLN A 158 ? UNP W8Q9Y7 ? ? insertion 428 16 2 11ZV LYS A 159 ? UNP W8Q9Y7 ? ? insertion 429 17 2 11ZV ILE A 160 ? UNP W8Q9Y7 ? ? insertion 430 18 2 11ZV GLU A 161 ? UNP W8Q9Y7 ? ? insertion 431 19 2 11ZV TRP A 162 ? UNP W8Q9Y7 ? ? insertion 432 20 2 11ZV HIS A 163 ? UNP W8Q9Y7 ? ? insertion 433 21 2 11ZV GLU A 164 ? UNP W8Q9Y7 ? ? insertion 434 22 2 11ZV GLY A 165 ? UNP W8Q9Y7 ? ? linker 435 23 2 11ZV GLY A 166 ? UNP W8Q9Y7 ? ? linker 436 24 2 11ZV SER A 167 ? UNP W8Q9Y7 ? ? linker 437 25 2 11ZV HIS A 168 ? UNP W8Q9Y7 ? ? 'expression tag' 438 26 2 11ZV HIS A 169 ? UNP W8Q9Y7 ? ? 'expression tag' 439 27 2 11ZV HIS A 170 ? UNP W8Q9Y7 ? ? 'expression tag' 440 28 2 11ZV HIS A 171 ? UNP W8Q9Y7 ? ? 'expression tag' 441 29 2 11ZV HIS A 172 ? UNP W8Q9Y7 ? ? 'expression tag' 442 30 2 11ZV HIS A 173 ? UNP W8Q9Y7 ? ? 'expression tag' 443 31 2 11ZV HIS A 174 ? UNP W8Q9Y7 ? ? 'expression tag' 444 32 2 11ZV HIS A 175 ? UNP W8Q9Y7 ? ? 'expression tag' 445 33 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 94 ? GLY A 101 ? ASP A 364 GLY A 371 5 ? 8 HELX_P HELX_P2 AA2 THR B 43 ? HIS B 54 ? THR B 4 HIS B 15 1 ? 12 HELX_P HELX_P3 AA3 SER B 62 ? TYR B 70 ? SER B 23 TYR B 31 1 ? 9 HELX_P HELX_P4 AA4 SER B 75 ? SER B 90 ? SER B 36 SER B 51 1 ? 16 HELX_P HELX_P5 AA5 LYS B 94 ? SER B 96 ? LYS B 55 SER B 57 5 ? 3 HELX_P HELX_P6 AA6 ARG B 97 ? GLY B 120 ? ARG B 58 GLY B 81 1 ? 24 HELX_P HELX_P7 AA7 SER B 123 ? TRP B 146 ? SER B 84 TRP B 107 1 ? 24 HELX_P HELX_P8 AA8 GLU B 149 ? ASN B 165 ? GLU B 110 ASN B 126 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 65 SG ? ? ? 1_555 A CYS 108 SG ? ? A CYS 335 A CYS 378 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf2 disulf ? ? A CYS 79 SG ? ? ? 1_555 A CYS 82 SG ? ? A CYS 349 A CYS 352 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? A CYS 91 SG ? ? ? 1_555 A CYS 116 SG ? ? A CYS 361 A CYS 386 1_555 ? ? ? ? ? ? ? 2.031 ? ? covale1 covale one ? A ASN 41 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 311 C NAG 1 1_555 ? ? ? ? ? ? ? 1.421 ? N-Glycosylation covale2 covale one ? A ASN 61 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 331 D NAG 1 1_555 ? ? ? ? ? ? ? 1.443 ? N-Glycosylation covale3 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.393 ? ? covale4 covale both ? C NAG . O4 ? ? ? 1_555 C BMA . C1 ? ? C NAG 2 C BMA 3 1_555 ? ? ? ? ? ? ? 1.391 ? ? covale5 covale both ? C BMA . O3 ? ? ? 1_555 C MAN . C1 ? ? C BMA 3 C MAN 4 1_555 ? ? ? ? ? ? ? 1.393 ? ? covale6 covale both ? C BMA . O6 ? ? ? 1_555 C MAN . C1 ? ? C BMA 3 C MAN 5 1_555 ? ? ? ? ? ? ? 1.402 ? ? covale7 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? D NAG 1 D NAG 2 1_555 ? ? ? ? ? ? ? 1.449 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG C . ? ASN A 41 ? NAG C 1 ? 1_555 ASN A 311 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG D . ? ASN A 61 ? NAG D 1 ? 1_555 ASN A 331 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 CYS A 65 ? CYS A 108 ? CYS A 335 ? 1_555 CYS A 378 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 79 ? CYS A 82 ? CYS A 349 ? 1_555 CYS A 352 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 91 ? CYS A 116 ? CYS A 361 ? 1_555 CYS A 386 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 50 ? ILE A 58 ? GLU A 320 ILE A 328 AA1 2 GLU A 36 ? ASP A 47 ? GLU A 306 ASP A 317 AA1 3 TYR A 70 ? THR A 80 ? TYR A 340 THR A 350 AA1 4 ASN A 127 ? GLY A 146 ? ASN A 397 GLY A 416 AA1 5 SER A 103 ? SER A 110 ? SER A 373 SER A 380 AA1 6 SER A 63 ? CYS A 65 ? SER A 333 CYS A 335 AA2 1 GLU A 50 ? ILE A 58 ? GLU A 320 ILE A 328 AA2 2 GLU A 36 ? ASP A 47 ? GLU A 306 ASP A 317 AA2 3 TYR A 70 ? THR A 80 ? TYR A 340 THR A 350 AA2 4 ASN A 127 ? GLY A 146 ? ASN A 397 GLY A 416 AA2 5 CYS A 116 ? THR A 123 ? CYS A 386 THR A 393 AA2 6 THR A 83 ? ARG A 87 ? THR A 353 ARG A 357 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ASP A 54 ? O ASP A 324 N SER A 43 ? N SER A 313 AA1 2 3 N LEU A 40 ? N LEU A 310 O ASN A 76 ? O ASN A 346 AA1 3 4 N PHE A 71 ? N PHE A 341 O THR A 145 ? O THR A 415 AA1 4 5 O HIS A 144 ? O HIS A 414 N PHE A 104 ? N PHE A 374 AA1 5 6 O LEU A 109 ? O LEU A 379 N TYR A 64 ? N TYR A 334 AA2 1 2 O ASP A 54 ? O ASP A 324 N SER A 43 ? N SER A 313 AA2 2 3 N LEU A 40 ? N LEU A 310 O ASN A 76 ? O ASN A 346 AA2 3 4 N PHE A 71 ? N PHE A 341 O THR A 145 ? O THR A 415 AA2 4 5 O TYR A 128 ? O TYR A 398 N VAL A 122 ? N VAL A 392 AA2 5 6 O LYS A 119 ? O LYS A 389 N ARG A 87 ? N ARG A 357 # _pdbx_entry_details.entry_id 11ZV _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TYR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 394 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -113.48 _pdbx_validate_torsion.psi -89.77 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 58 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.137 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 11ZV _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name AlphaFold _em_3d_fitting_list.type 'in silico model' _em_3d_fitting_list.accession_code ? _em_3d_fitting_list.initial_refinement_model_id ? # _em_3d_reconstruction.entry_id 11ZV _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.84 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 512440 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Complex of PDCoV RBD, RBD minibinder 11, PD3 Fab, and anti-kappa light chain nanobody' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1,2 # _em_image_scans.entry_id 11ZV _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size 5.0 _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 4092 _em_image_scans.dimension_width 5760 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 11ZV _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 1500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 11ZV _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 11ZV _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 271 ? A MET 1 2 1 Y 1 A GLY 272 ? A GLY 2 3 1 Y 1 A ILE 273 ? A ILE 3 4 1 Y 1 A LEU 274 ? A LEU 4 5 1 Y 1 A PRO 275 ? A PRO 5 6 1 Y 1 A SER 276 ? A SER 6 7 1 Y 1 A PRO 277 ? A PRO 7 8 1 Y 1 A GLY 278 ? A GLY 8 9 1 Y 1 A MET 279 ? A MET 9 10 1 Y 1 A PRO 280 ? A PRO 10 11 1 Y 1 A ALA 281 ? A ALA 11 12 1 Y 1 A LEU 282 ? A LEU 12 13 1 Y 1 A LEU 283 ? A LEU 13 14 1 Y 1 A SER 284 ? A SER 14 15 1 Y 1 A LEU 285 ? A LEU 15 16 1 Y 1 A VAL 286 ? A VAL 16 17 1 Y 1 A SER 287 ? A SER 17 18 1 Y 1 A LEU 288 ? A LEU 18 19 1 Y 1 A LEU 289 ? A LEU 19 20 1 Y 1 A SER 290 ? A SER 20 21 1 Y 1 A VAL 291 ? A VAL 21 22 1 Y 1 A LEU 292 ? A LEU 22 23 1 Y 1 A LEU 293 ? A LEU 23 24 1 Y 1 A MET 294 ? A MET 24 25 1 Y 1 A GLY 295 ? A GLY 25 26 1 Y 1 A CYS 296 ? A CYS 26 27 1 Y 1 A VAL 297 ? A VAL 27 28 1 Y 1 A ALA 298 ? A ALA 28 29 1 Y 1 A GLU 299 ? A GLU 29 30 1 Y 1 A THR 300 ? A THR 30 31 1 Y 1 A GLY 301 ? A GLY 31 32 1 Y 1 A THR 302 ? A THR 32 33 1 Y 1 A PRO 303 ? A PRO 33 34 1 Y 1 A GLU 304 ? A GLU 34 35 1 Y 1 A GLY 418 ? A GLY 148 36 1 Y 1 A SER 419 ? A SER 149 37 1 Y 1 A GLY 420 ? A GLY 150 38 1 Y 1 A LEU 421 ? A LEU 151 39 1 Y 1 A ASN 422 ? A ASN 152 40 1 Y 1 A ASP 423 ? A ASP 153 41 1 Y 1 A ILE 424 ? A ILE 154 42 1 Y 1 A PHE 425 ? A PHE 155 43 1 Y 1 A GLU 426 ? A GLU 156 44 1 Y 1 A ALA 427 ? A ALA 157 45 1 Y 1 A GLN 428 ? A GLN 158 46 1 Y 1 A LYS 429 ? A LYS 159 47 1 Y 1 A ILE 430 ? A ILE 160 48 1 Y 1 A GLU 431 ? A GLU 161 49 1 Y 1 A TRP 432 ? A TRP 162 50 1 Y 1 A HIS 433 ? A HIS 163 51 1 Y 1 A GLU 434 ? A GLU 164 52 1 Y 1 A GLY 435 ? A GLY 165 53 1 Y 1 A GLY 436 ? A GLY 166 54 1 Y 1 A SER 437 ? A SER 167 55 1 Y 1 A HIS 438 ? A HIS 168 56 1 Y 1 A HIS 439 ? A HIS 169 57 1 Y 1 A HIS 440 ? A HIS 170 58 1 Y 1 A HIS 441 ? A HIS 171 59 1 Y 1 A HIS 442 ? A HIS 172 60 1 Y 1 A HIS 443 ? A HIS 173 61 1 Y 1 A HIS 444 ? A HIS 174 62 1 Y 1 A HIS 445 ? A HIS 175 63 1 Y 1 B MET -38 ? B MET 1 64 1 Y 1 B HIS -37 ? B HIS 2 65 1 Y 1 B HIS -36 ? B HIS 3 66 1 Y 1 B HIS -35 ? B HIS 4 67 1 Y 1 B HIS -34 ? B HIS 5 68 1 Y 1 B HIS -33 ? B HIS 6 69 1 Y 1 B HIS -32 ? B HIS 7 70 1 Y 1 B HIS -31 ? B HIS 8 71 1 Y 1 B HIS -30 ? B HIS 9 72 1 Y 1 B GLY -29 ? B GLY 10 73 1 Y 1 B GLY -28 ? B GLY 11 74 1 Y 1 B SER -27 ? B SER 12 75 1 Y 1 B LEU -26 ? B LEU 13 76 1 Y 1 B VAL -25 ? B VAL 14 77 1 Y 1 B PRO -24 ? B PRO 15 78 1 Y 1 B ARG -23 ? B ARG 16 79 1 Y 1 B GLY -22 ? B GLY 17 80 1 Y 1 B SER -21 ? B SER 18 81 1 Y 1 B GLY -20 ? B GLY 19 82 1 Y 1 B GLY -19 ? B GLY 20 83 1 Y 1 B SER -18 ? B SER 21 84 1 Y 1 B GLY -17 ? B GLY 22 85 1 Y 1 B LEU -16 ? B LEU 23 86 1 Y 1 B ASN -15 ? B ASN 24 87 1 Y 1 B ASP -14 ? B ASP 25 88 1 Y 1 B ILE -13 ? B ILE 26 89 1 Y 1 B PHE -12 ? B PHE 27 90 1 Y 1 B GLU -11 ? B GLU 28 91 1 Y 1 B ALA -10 ? B ALA 29 92 1 Y 1 B GLN -9 ? B GLN 30 93 1 Y 1 B LYS -8 ? B LYS 31 94 1 Y 1 B ILE -7 ? B ILE 32 95 1 Y 1 B GLU -6 ? B GLU 33 96 1 Y 1 B TRP -5 ? B TRP 34 97 1 Y 1 B HIS -4 ? B HIS 35 98 1 Y 1 B GLU -3 ? B GLU 36 99 1 Y 1 B GLY -2 ? B GLY 37 100 1 Y 1 B GLY -1 ? B GLY 38 101 1 Y 1 B SER 0 ? B SER 39 102 1 Y 1 B HIS 1 ? B HIS 40 103 1 Y 1 B MET 2 ? B MET 41 104 1 Y 1 B GLU 130 ? B GLU 169 105 1 Y 1 B LYS 131 ? B LYS 170 106 1 Y 1 B ILE 132 ? B ILE 171 107 1 Y 1 B TYR 133 ? B TYR 172 108 1 Y 1 B GLU 134 ? B GLU 173 109 1 Y 1 B ALA 135 ? B ALA 174 110 1 Y 1 B GLU 136 ? B GLU 175 111 1 Y 1 B LYS 137 ? B LYS 176 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 ILE N N N N 185 ILE CA C N S 186 ILE C C N N 187 ILE O O N N 188 ILE CB C N S 189 ILE CG1 C N N 190 ILE CG2 C N N 191 ILE CD1 C N N 192 ILE OXT O N N 193 ILE H H N N 194 ILE H2 H N N 195 ILE HA H N N 196 ILE HB H N N 197 ILE HG12 H N N 198 ILE HG13 H N N 199 ILE HG21 H N N 200 ILE HG22 H N N 201 ILE HG23 H N N 202 ILE HD11 H N N 203 ILE HD12 H N N 204 ILE HD13 H N N 205 ILE HXT H N N 206 LEU N N N N 207 LEU CA C N S 208 LEU C C N N 209 LEU O O N N 210 LEU CB C N N 211 LEU CG C N N 212 LEU CD1 C N N 213 LEU CD2 C N N 214 LEU OXT O N N 215 LEU H H N N 216 LEU H2 H N N 217 LEU HA H N N 218 LEU HB2 H N N 219 LEU HB3 H N N 220 LEU HG H N N 221 LEU HD11 H N N 222 LEU HD12 H N N 223 LEU HD13 H N N 224 LEU HD21 H N N 225 LEU HD22 H N N 226 LEU HD23 H N N 227 LEU HXT H N N 228 LYS N N N N 229 LYS CA C N S 230 LYS C C N N 231 LYS O O N N 232 LYS CB C N N 233 LYS CG C N N 234 LYS CD C N N 235 LYS CE C N N 236 LYS NZ N N N 237 LYS OXT O N N 238 LYS H H N N 239 LYS H2 H N N 240 LYS HA H N N 241 LYS HB2 H N N 242 LYS HB3 H N N 243 LYS HG2 H N N 244 LYS HG3 H N N 245 LYS HD2 H N N 246 LYS HD3 H N N 247 LYS HE2 H N N 248 LYS HE3 H N N 249 LYS HZ1 H N N 250 LYS HZ2 H N N 251 LYS HZ3 H N N 252 LYS HXT H N N 253 MAN C1 C N S 254 MAN C2 C N S 255 MAN C3 C N S 256 MAN C4 C N S 257 MAN C5 C N R 258 MAN C6 C N N 259 MAN O1 O N N 260 MAN O2 O N N 261 MAN O3 O N N 262 MAN O4 O N N 263 MAN O5 O N N 264 MAN O6 O N N 265 MAN H1 H N N 266 MAN H2 H N N 267 MAN H3 H N N 268 MAN H4 H N N 269 MAN H5 H N N 270 MAN H61 H N N 271 MAN H62 H N N 272 MAN HO1 H N N 273 MAN HO2 H N N 274 MAN HO3 H N N 275 MAN HO4 H N N 276 MAN HO6 H N N 277 MET N N N N 278 MET CA C N S 279 MET C C N N 280 MET O O N N 281 MET CB C N N 282 MET CG C N N 283 MET SD S N N 284 MET CE C N N 285 MET OXT O N N 286 MET H H N N 287 MET H2 H N N 288 MET HA H N N 289 MET HB2 H N N 290 MET HB3 H N N 291 MET HG2 H N N 292 MET HG3 H N N 293 MET HE1 H N N 294 MET HE2 H N N 295 MET HE3 H N N 296 MET HXT H N N 297 NAG C1 C N R 298 NAG C2 C N R 299 NAG C3 C N R 300 NAG C4 C N S 301 NAG C5 C N R 302 NAG C6 C N N 303 NAG C7 C N N 304 NAG C8 C N N 305 NAG N2 N N N 306 NAG O1 O N N 307 NAG O3 O N N 308 NAG O4 O N N 309 NAG O5 O N N 310 NAG O6 O N N 311 NAG O7 O N N 312 NAG H1 H N N 313 NAG H2 H N N 314 NAG H3 H N N 315 NAG H4 H N N 316 NAG H5 H N N 317 NAG H61 H N N 318 NAG H62 H N N 319 NAG H81 H N N 320 NAG H82 H N N 321 NAG H83 H N N 322 NAG HN2 H N N 323 NAG HO1 H N N 324 NAG HO3 H N N 325 NAG HO4 H N N 326 NAG HO6 H N N 327 PHE N N N N 328 PHE CA C N S 329 PHE C C N N 330 PHE O O N N 331 PHE CB C N N 332 PHE CG C Y N 333 PHE CD1 C Y N 334 PHE CD2 C Y N 335 PHE CE1 C Y N 336 PHE CE2 C Y N 337 PHE CZ C Y N 338 PHE OXT O N N 339 PHE H H N N 340 PHE H2 H N N 341 PHE HA H N N 342 PHE HB2 H N N 343 PHE HB3 H N N 344 PHE HD1 H N N 345 PHE HD2 H N N 346 PHE HE1 H N N 347 PHE HE2 H N N 348 PHE HZ H N N 349 PHE HXT H N N 350 PRO N N N N 351 PRO CA C N S 352 PRO C C N N 353 PRO O O N N 354 PRO CB C N N 355 PRO CG C N N 356 PRO CD C N N 357 PRO OXT O N N 358 PRO H H N N 359 PRO HA H N N 360 PRO HB2 H N N 361 PRO HB3 H N N 362 PRO HG2 H N N 363 PRO HG3 H N N 364 PRO HD2 H N N 365 PRO HD3 H N N 366 PRO HXT H N N 367 SER N N N N 368 SER CA C N S 369 SER C C N N 370 SER O O N N 371 SER CB C N N 372 SER OG O N N 373 SER OXT O N N 374 SER H H N N 375 SER H2 H N N 376 SER HA H N N 377 SER HB2 H N N 378 SER HB3 H N N 379 SER HG H N N 380 SER HXT H N N 381 THR N N N N 382 THR CA C N S 383 THR C C N N 384 THR O O N N 385 THR CB C N R 386 THR OG1 O N N 387 THR CG2 C N N 388 THR OXT O N N 389 THR H H N N 390 THR H2 H N N 391 THR HA H N N 392 THR HB H N N 393 THR HG1 H N N 394 THR HG21 H N N 395 THR HG22 H N N 396 THR HG23 H N N 397 THR HXT H N N 398 TRP N N N N 399 TRP CA C N S 400 TRP C C N N 401 TRP O O N N 402 TRP CB C N N 403 TRP CG C Y N 404 TRP CD1 C Y N 405 TRP CD2 C Y N 406 TRP NE1 N Y N 407 TRP CE2 C Y N 408 TRP CE3 C Y N 409 TRP CZ2 C Y N 410 TRP CZ3 C Y N 411 TRP CH2 C Y N 412 TRP OXT O N N 413 TRP H H N N 414 TRP H2 H N N 415 TRP HA H N N 416 TRP HB2 H N N 417 TRP HB3 H N N 418 TRP HD1 H N N 419 TRP HE1 H N N 420 TRP HE3 H N N 421 TRP HZ2 H N N 422 TRP HZ3 H N N 423 TRP HH2 H N N 424 TRP HXT H N N 425 TYR N N N N 426 TYR CA C N S 427 TYR C C N N 428 TYR O O N N 429 TYR CB C N N 430 TYR CG C Y N 431 TYR CD1 C Y N 432 TYR CD2 C Y N 433 TYR CE1 C Y N 434 TYR CE2 C Y N 435 TYR CZ C Y N 436 TYR OH O N N 437 TYR OXT O N N 438 TYR H H N N 439 TYR H2 H N N 440 TYR HA H N N 441 TYR HB2 H N N 442 TYR HB3 H N N 443 TYR HD1 H N N 444 TYR HD2 H N N 445 TYR HE1 H N N 446 TYR HE2 H N N 447 TYR HH H N N 448 TYR HXT H N N 449 VAL N N N N 450 VAL CA C N S 451 VAL C C N N 452 VAL O O N N 453 VAL CB C N N 454 VAL CG1 C N N 455 VAL CG2 C N N 456 VAL OXT O N N 457 VAL H H N N 458 VAL H2 H N N 459 VAL HA H N N 460 VAL HB H N N 461 VAL HG11 H N N 462 VAL HG12 H N N 463 VAL HG13 H N N 464 VAL HG21 H N N 465 VAL HG22 H N N 466 VAL HG23 H N N 467 VAL HXT H N N 468 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 HOH O H1 sing N N 174 HOH O H2 sing N N 175 ILE N CA sing N N 176 ILE N H sing N N 177 ILE N H2 sing N N 178 ILE CA C sing N N 179 ILE CA CB sing N N 180 ILE CA HA sing N N 181 ILE C O doub N N 182 ILE C OXT sing N N 183 ILE CB CG1 sing N N 184 ILE CB CG2 sing N N 185 ILE CB HB sing N N 186 ILE CG1 CD1 sing N N 187 ILE CG1 HG12 sing N N 188 ILE CG1 HG13 sing N N 189 ILE CG2 HG21 sing N N 190 ILE CG2 HG22 sing N N 191 ILE CG2 HG23 sing N N 192 ILE CD1 HD11 sing N N 193 ILE CD1 HD12 sing N N 194 ILE CD1 HD13 sing N N 195 ILE OXT HXT sing N N 196 LEU N CA sing N N 197 LEU N H sing N N 198 LEU N H2 sing N N 199 LEU CA C sing N N 200 LEU CA CB sing N N 201 LEU CA HA sing N N 202 LEU C O doub N N 203 LEU C OXT sing N N 204 LEU CB CG sing N N 205 LEU CB HB2 sing N N 206 LEU CB HB3 sing N N 207 LEU CG CD1 sing N N 208 LEU CG CD2 sing N N 209 LEU CG HG sing N N 210 LEU CD1 HD11 sing N N 211 LEU CD1 HD12 sing N N 212 LEU CD1 HD13 sing N N 213 LEU CD2 HD21 sing N N 214 LEU CD2 HD22 sing N N 215 LEU CD2 HD23 sing N N 216 LEU OXT HXT sing N N 217 LYS N CA sing N N 218 LYS N H sing N N 219 LYS N H2 sing N N 220 LYS CA C sing N N 221 LYS CA CB sing N N 222 LYS CA HA sing N N 223 LYS C O doub N N 224 LYS C OXT sing N N 225 LYS CB CG sing N N 226 LYS CB HB2 sing N N 227 LYS CB HB3 sing N N 228 LYS CG CD sing N N 229 LYS CG HG2 sing N N 230 LYS CG HG3 sing N N 231 LYS CD CE sing N N 232 LYS CD HD2 sing N N 233 LYS CD HD3 sing N N 234 LYS CE NZ sing N N 235 LYS CE HE2 sing N N 236 LYS CE HE3 sing N N 237 LYS NZ HZ1 sing N N 238 LYS NZ HZ2 sing N N 239 LYS NZ HZ3 sing N N 240 LYS OXT HXT sing N N 241 MAN C1 C2 sing N N 242 MAN C1 O1 sing N N 243 MAN C1 O5 sing N N 244 MAN C1 H1 sing N N 245 MAN C2 C3 sing N N 246 MAN C2 O2 sing N N 247 MAN C2 H2 sing N N 248 MAN C3 C4 sing N N 249 MAN C3 O3 sing N N 250 MAN C3 H3 sing N N 251 MAN C4 C5 sing N N 252 MAN C4 O4 sing N N 253 MAN C4 H4 sing N N 254 MAN C5 C6 sing N N 255 MAN C5 O5 sing N N 256 MAN C5 H5 sing N N 257 MAN C6 O6 sing N N 258 MAN C6 H61 sing N N 259 MAN C6 H62 sing N N 260 MAN O1 HO1 sing N N 261 MAN O2 HO2 sing N N 262 MAN O3 HO3 sing N N 263 MAN O4 HO4 sing N N 264 MAN O6 HO6 sing N N 265 MET N CA sing N N 266 MET N H sing N N 267 MET N H2 sing N N 268 MET CA C sing N N 269 MET CA CB sing N N 270 MET CA HA sing N N 271 MET C O doub N N 272 MET C OXT sing N N 273 MET CB CG sing N N 274 MET CB HB2 sing N N 275 MET CB HB3 sing N N 276 MET CG SD sing N N 277 MET CG HG2 sing N N 278 MET CG HG3 sing N N 279 MET SD CE sing N N 280 MET CE HE1 sing N N 281 MET CE HE2 sing N N 282 MET CE HE3 sing N N 283 MET OXT HXT sing N N 284 NAG C1 C2 sing N N 285 NAG C1 O1 sing N N 286 NAG C1 O5 sing N N 287 NAG C1 H1 sing N N 288 NAG C2 C3 sing N N 289 NAG C2 N2 sing N N 290 NAG C2 H2 sing N N 291 NAG C3 C4 sing N N 292 NAG C3 O3 sing N N 293 NAG C3 H3 sing N N 294 NAG C4 C5 sing N N 295 NAG C4 O4 sing N N 296 NAG C4 H4 sing N N 297 NAG C5 C6 sing N N 298 NAG C5 O5 sing N N 299 NAG C5 H5 sing N N 300 NAG C6 O6 sing N N 301 NAG C6 H61 sing N N 302 NAG C6 H62 sing N N 303 NAG C7 C8 sing N N 304 NAG C7 N2 sing N N 305 NAG C7 O7 doub N N 306 NAG C8 H81 sing N N 307 NAG C8 H82 sing N N 308 NAG C8 H83 sing N N 309 NAG N2 HN2 sing N N 310 NAG O1 HO1 sing N N 311 NAG O3 HO3 sing N N 312 NAG O4 HO4 sing N N 313 NAG O6 HO6 sing N N 314 PHE N CA sing N N 315 PHE N H sing N N 316 PHE N H2 sing N N 317 PHE CA C sing N N 318 PHE CA CB sing N N 319 PHE CA HA sing N N 320 PHE C O doub N N 321 PHE C OXT sing N N 322 PHE CB CG sing N N 323 PHE CB HB2 sing N N 324 PHE CB HB3 sing N N 325 PHE CG CD1 doub Y N 326 PHE CG CD2 sing Y N 327 PHE CD1 CE1 sing Y N 328 PHE CD1 HD1 sing N N 329 PHE CD2 CE2 doub Y N 330 PHE CD2 HD2 sing N N 331 PHE CE1 CZ doub Y N 332 PHE CE1 HE1 sing N N 333 PHE CE2 CZ sing Y N 334 PHE CE2 HE2 sing N N 335 PHE CZ HZ sing N N 336 PHE OXT HXT sing N N 337 PRO N CA sing N N 338 PRO N CD sing N N 339 PRO N H sing N N 340 PRO CA C sing N N 341 PRO CA CB sing N N 342 PRO CA HA sing N N 343 PRO C O doub N N 344 PRO C OXT sing N N 345 PRO CB CG sing N N 346 PRO CB HB2 sing N N 347 PRO CB HB3 sing N N 348 PRO CG CD sing N N 349 PRO CG HG2 sing N N 350 PRO CG HG3 sing N N 351 PRO CD HD2 sing N N 352 PRO CD HD3 sing N N 353 PRO OXT HXT sing N N 354 SER N CA sing N N 355 SER N H sing N N 356 SER N H2 sing N N 357 SER CA C sing N N 358 SER CA CB sing N N 359 SER CA HA sing N N 360 SER C O doub N N 361 SER C OXT sing N N 362 SER CB OG sing N N 363 SER CB HB2 sing N N 364 SER CB HB3 sing N N 365 SER OG HG sing N N 366 SER OXT HXT sing N N 367 THR N CA sing N N 368 THR N H sing N N 369 THR N H2 sing N N 370 THR CA C sing N N 371 THR CA CB sing N N 372 THR CA HA sing N N 373 THR C O doub N N 374 THR C OXT sing N N 375 THR CB OG1 sing N N 376 THR CB CG2 sing N N 377 THR CB HB sing N N 378 THR OG1 HG1 sing N N 379 THR CG2 HG21 sing N N 380 THR CG2 HG22 sing N N 381 THR CG2 HG23 sing N N 382 THR OXT HXT sing N N 383 TRP N CA sing N N 384 TRP N H sing N N 385 TRP N H2 sing N N 386 TRP CA C sing N N 387 TRP CA CB sing N N 388 TRP CA HA sing N N 389 TRP C O doub N N 390 TRP C OXT sing N N 391 TRP CB CG sing N N 392 TRP CB HB2 sing N N 393 TRP CB HB3 sing N N 394 TRP CG CD1 doub Y N 395 TRP CG CD2 sing Y N 396 TRP CD1 NE1 sing Y N 397 TRP CD1 HD1 sing N N 398 TRP CD2 CE2 doub Y N 399 TRP CD2 CE3 sing Y N 400 TRP NE1 CE2 sing Y N 401 TRP NE1 HE1 sing N N 402 TRP CE2 CZ2 sing Y N 403 TRP CE3 CZ3 doub Y N 404 TRP CE3 HE3 sing N N 405 TRP CZ2 CH2 doub Y N 406 TRP CZ2 HZ2 sing N N 407 TRP CZ3 CH2 sing Y N 408 TRP CZ3 HZ3 sing N N 409 TRP CH2 HH2 sing N N 410 TRP OXT HXT sing N N 411 TYR N CA sing N N 412 TYR N H sing N N 413 TYR N H2 sing N N 414 TYR CA C sing N N 415 TYR CA CB sing N N 416 TYR CA HA sing N N 417 TYR C O doub N N 418 TYR C OXT sing N N 419 TYR CB CG sing N N 420 TYR CB HB2 sing N N 421 TYR CB HB3 sing N N 422 TYR CG CD1 doub Y N 423 TYR CG CD2 sing Y N 424 TYR CD1 CE1 sing Y N 425 TYR CD1 HD1 sing N N 426 TYR CD2 CE2 doub Y N 427 TYR CD2 HD2 sing N N 428 TYR CE1 CZ doub Y N 429 TYR CE1 HE1 sing N N 430 TYR CE2 CZ sing Y N 431 TYR CE2 HE2 sing N N 432 TYR CZ OH sing N N 433 TYR OH HH sing N N 434 TYR OXT HXT sing N N 435 VAL N CA sing N N 436 VAL N H sing N N 437 VAL N H2 sing N N 438 VAL CA C sing N N 439 VAL CA CB sing N N 440 VAL CA HA sing N N 441 VAL C O doub N N 442 VAL C OXT sing N N 443 VAL CB CG1 sing N N 444 VAL CB CG2 sing N N 445 VAL CB HB sing N N 446 VAL CG1 HG11 sing N N 447 VAL CG1 HG12 sing N N 448 VAL CG1 HG13 sing N N 449 VAL CG2 HG21 sing N N 450 VAL CG2 HG22 sing N N 451 VAL CG2 HG23 sing N N 452 VAL OXT HXT sing N N 453 # _em_admin.current_status REL _em_admin.deposition_date 2026-03-21 _em_admin.deposition_site RCSB _em_admin.entry_id 11ZV _em_admin.last_update 2026-05-13 _em_admin.map_release_date 2026-05-13 _em_admin.title ;Structure of the Porcine deltacoronavirus (PDCoV) receptor-binding domain bound to the RBD minibinder 11, the PD3 Fab, and the Kappa light chain nanobody (local refinement) ; # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1586324 _em_entity_assembly_naturalsource.organism 'Porcine deltacoronavirus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 5 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 52.8 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 10236 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? Warp ? ? 'PARTICLE SELECTION' ? 2 1 ? ? Topaz ? ? 'IMAGE ACQUISITION' ? 3 1 ? 1 Leginon ? ? MASKING ? 4 1 ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 6 1 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 1 ? ? ? ? ? 'MODEL FITTING' ? 8 1 1 ? ? ? ? OTHER ? 9 1 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? 'MODEL REFINEMENT' ? 14 ? 1 ? PHENIX ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 NAG 1 n 3 NAG 2 n 3 BMA 3 n 3 MAN 4 n 3 MAN 5 n 4 NAG 1 n 4 NAG 2 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name AlphaFold _pdbx_initial_refinement_model.accession_code ? # _atom_sites.entry_id 11ZV _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #