HEADER VIRAL PROTEIN 21-MAR-26 11ZV TITLE STRUCTURE OF THE PORCINE DELTACORONAVIRUS (PDCOV) RECEPTOR-BINDING TITLE 2 DOMAIN BOUND TO THE RBD MINIBINDER 11, THE PD3 FAB, AND THE KAPPA TITLE 3 LIGHT CHAIN NANOBODY (LOCAL REFINEMENT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PDCOV IL121_2014 RECEPTOR BINDING DOMAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 302-415; COMPND 5 SYNONYM: R-PTP-S,CHICK RECEPTOR TYROSINE PHOSPHATASE ALPHA,CRYP COMPND 6 ALPHA,CRYPALPHA; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RBD MINIBINDER 11; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE DELTACORONAVIRUS; SOURCE 3 ORGANISM_TAXID: 1586324; SOURCE 4 GENE: PTPRS; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PORCINE DELTACORONAVIRUS, MINIBINDER, PROTEIN DESIGN, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 SSGCID, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR N.G.AVERY,Y.J.PARK,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS AUTHOR 2 DISEASE (SSGCID),D.VEESLER REVDAT 1 13-MAY-26 11ZV 0 JRNL AUTH N.G.AVERY,C.N.YOSHIYAMA,A.L.TAYLOR,Y.J.PARK,D.ASARNOW, JRNL AUTH 2 L.PERRUZZA,J.T.BROWN,D.CORTI,F.BENIGNI,T.N.STARR,D.VEESLER JRNL TITL COMPUTATIONAL DESIGN OF AN ULTRAPOTENT DELTACORONAVIRUS JRNL TITL 2 MINIPROTEIN INHIBITOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 123 56123 2026 JRNL REFN ESSN 1091-6490 JRNL PMID 42054371 JRNL DOI 10.1073/PNAS.2533456123 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : WARP, TOPAZ, LEGINON, CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.840 REMARK 3 NUMBER OF PARTICLES : 512440 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 11ZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-26. REMARK 100 THE DEPOSITION ID IS D_1000306330. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF PDCOV RBD, RBD REMARK 245 MINIBINDER 11, PD3 FAB, AND REMARK 245 ANTI-KAPPA LIGHT CHAIN NANOBODY REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 10236 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5280.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 271 REMARK 465 GLY A 272 REMARK 465 ILE A 273 REMARK 465 LEU A 274 REMARK 465 PRO A 275 REMARK 465 SER A 276 REMARK 465 PRO A 277 REMARK 465 GLY A 278 REMARK 465 MET A 279 REMARK 465 PRO A 280 REMARK 465 ALA A 281 REMARK 465 LEU A 282 REMARK 465 LEU A 283 REMARK 465 SER A 284 REMARK 465 LEU A 285 REMARK 465 VAL A 286 REMARK 465 SER A 287 REMARK 465 LEU A 288 REMARK 465 LEU A 289 REMARK 465 SER A 290 REMARK 465 VAL A 291 REMARK 465 LEU A 292 REMARK 465 LEU A 293 REMARK 465 MET A 294 REMARK 465 GLY A 295 REMARK 465 CYS A 296 REMARK 465 VAL A 297 REMARK 465 ALA A 298 REMARK 465 GLU A 299 REMARK 465 THR A 300 REMARK 465 GLY A 301 REMARK 465 THR A 302 REMARK 465 PRO A 303 REMARK 465 GLU A 304 REMARK 465 GLY A 418 REMARK 465 SER A 419 REMARK 465 GLY A 420 REMARK 465 LEU A 421 REMARK 465 ASN A 422 REMARK 465 ASP A 423 REMARK 465 ILE A 424 REMARK 465 PHE A 425 REMARK 465 GLU A 426 REMARK 465 ALA A 427 REMARK 465 GLN A 428 REMARK 465 LYS A 429 REMARK 465 ILE A 430 REMARK 465 GLU A 431 REMARK 465 TRP A 432 REMARK 465 HIS A 433 REMARK 465 GLU A 434 REMARK 465 GLY A 435 REMARK 465 GLY A 436 REMARK 465 SER A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 MET B -38 REMARK 465 HIS B -37 REMARK 465 HIS B -36 REMARK 465 HIS B -35 REMARK 465 HIS B -34 REMARK 465 HIS B -33 REMARK 465 HIS B -32 REMARK 465 HIS B -31 REMARK 465 HIS B -30 REMARK 465 GLY B -29 REMARK 465 GLY B -28 REMARK 465 SER B -27 REMARK 465 LEU B -26 REMARK 465 VAL B -25 REMARK 465 PRO B -24 REMARK 465 ARG B -23 REMARK 465 GLY B -22 REMARK 465 SER B -21 REMARK 465 GLY B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 GLY B -17 REMARK 465 LEU B -16 REMARK 465 ASN B -15 REMARK 465 ASP B -14 REMARK 465 ILE B -13 REMARK 465 PHE B -12 REMARK 465 GLU B -11 REMARK 465 ALA B -10 REMARK 465 GLN B -9 REMARK 465 LYS B -8 REMARK 465 ILE B -7 REMARK 465 GLU B -6 REMARK 465 TRP B -5 REMARK 465 HIS B -4 REMARK 465 GLU B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 HIS B 1 REMARK 465 MET B 2 REMARK 465 GLU B 130 REMARK 465 LYS B 131 REMARK 465 ILE B 132 REMARK 465 TYR B 133 REMARK 465 GLU B 134 REMARK 465 ALA B 135 REMARK 465 GLU B 136 REMARK 465 LYS B 137 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 313 OG REMARK 470 SER A 373 OG REMARK 470 SER A 383 OG REMARK 470 LEU B 3 CG CD1 CD2 REMARK 470 THR B 4 OG1 CG2 REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 ASP B 22 CG OD1 OD2 REMARK 470 SER B 23 OG REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 SER B 36 OG REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 SER B 51 OG REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 ASP B 53 CG OD1 OD2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 SER B 57 OG REMARK 470 THR B 83 OG1 CG2 REMARK 470 SER B 84 OG REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 GLU B 112 CG CD OE1 OE2 REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 GLU B 127 CG CD OE1 OE2 REMARK 470 TYR B 129 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 394 -89.77 -113.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 58 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-76232 RELATED DB: EMDB REMARK 900 STRUCTURE OF THE PORCINE DELTACORONAVIRUS (PDCOV) RECEPTOR-BINDING REMARK 900 DOMAIN BOUND TO THE RBD MINIBINDER 11, THE PD3 FAB, AND THE KAPPA REMARK 900 LIGHT CHAIN NANOBODY (LOCAL REFINEMENT) DBREF 11ZV A 271 302 UNP F1NWE3 PTPRS_CHICK 1 32 DBREF 11ZV A 303 416 UNP W8Q9Y7 W8Q9Y7_9NIDO 303 416 DBREF 11ZV B -38 137 PDB 11ZV 11ZV -38 137 SEQADV 11ZV GLY A 272 UNP F1NWE3 ARG 2 CONFLICT SEQADV 11ZV THR A 300 UNP F1NWE3 SER 30 CONFLICT SEQADV 11ZV GLY A 301 UNP F1NWE3 PRO 31 CONFLICT SEQADV 11ZV THR A 302 UNP F1NWE3 PRO 32 CONFLICT SEQADV 11ZV GLY A 417 UNP W8Q9Y7 LINKER SEQADV 11ZV GLY A 418 UNP W8Q9Y7 LINKER SEQADV 11ZV SER A 419 UNP W8Q9Y7 LINKER SEQADV 11ZV GLY A 420 UNP W8Q9Y7 INSERTION SEQADV 11ZV LEU A 421 UNP W8Q9Y7 INSERTION SEQADV 11ZV ASN A 422 UNP W8Q9Y7 INSERTION SEQADV 11ZV ASP A 423 UNP W8Q9Y7 INSERTION SEQADV 11ZV ILE A 424 UNP W8Q9Y7 INSERTION SEQADV 11ZV PHE A 425 UNP W8Q9Y7 INSERTION SEQADV 11ZV GLU A 426 UNP W8Q9Y7 INSERTION SEQADV 11ZV ALA A 427 UNP W8Q9Y7 INSERTION SEQADV 11ZV GLN A 428 UNP W8Q9Y7 INSERTION SEQADV 11ZV LYS A 429 UNP W8Q9Y7 INSERTION SEQADV 11ZV ILE A 430 UNP W8Q9Y7 INSERTION SEQADV 11ZV GLU A 431 UNP W8Q9Y7 INSERTION SEQADV 11ZV TRP A 432 UNP W8Q9Y7 INSERTION SEQADV 11ZV HIS A 433 UNP W8Q9Y7 INSERTION SEQADV 11ZV GLU A 434 UNP W8Q9Y7 INSERTION SEQADV 11ZV GLY A 435 UNP W8Q9Y7 LINKER SEQADV 11ZV GLY A 436 UNP W8Q9Y7 LINKER SEQADV 11ZV SER A 437 UNP W8Q9Y7 LINKER SEQADV 11ZV HIS A 438 UNP W8Q9Y7 EXPRESSION TAG SEQADV 11ZV HIS A 439 UNP W8Q9Y7 EXPRESSION TAG SEQADV 11ZV HIS A 440 UNP W8Q9Y7 EXPRESSION TAG SEQADV 11ZV HIS A 441 UNP W8Q9Y7 EXPRESSION TAG SEQADV 11ZV HIS A 442 UNP W8Q9Y7 EXPRESSION TAG SEQADV 11ZV HIS A 443 UNP W8Q9Y7 EXPRESSION TAG SEQADV 11ZV HIS A 444 UNP W8Q9Y7 EXPRESSION TAG SEQADV 11ZV HIS A 445 UNP W8Q9Y7 EXPRESSION TAG SEQRES 1 A 175 MET GLY ILE LEU PRO SER PRO GLY MET PRO ALA LEU LEU SEQRES 2 A 175 SER LEU VAL SER LEU LEU SER VAL LEU LEU MET GLY CYS SEQRES 3 A 175 VAL ALA GLU THR GLY THR PRO GLU LEU GLU VAL VAL GLN SEQRES 4 A 175 LEU ASN ILE SER ALA HIS MET ASP PHE GLY GLU ALA ARG SEQRES 5 A 175 LEU ASP SER VAL THR ILE ASN GLY ASN THR SER TYR CYS SEQRES 6 A 175 VAL THR LYS PRO TYR PHE ARG LEU GLU THR ASN PHE MET SEQRES 7 A 175 CYS THR GLY CYS THR MET ASN LEU ARG THR ASP THR CYS SEQRES 8 A 175 SER PHE ASP LEU SER ALA VAL ASN ASN GLY MET SER PHE SEQRES 9 A 175 SER GLN PHE CYS LEU SER THR GLU SER GLY ALA CYS GLU SEQRES 10 A 175 MET LYS ILE ILE VAL THR TYR VAL TRP ASN TYR LEU LEU SEQRES 11 A 175 ARG GLN ARG LEU TYR VAL THR ALA VAL GLU GLY GLN THR SEQRES 12 A 175 HIS THR GLY GLY GLY SER GLY LEU ASN ASP ILE PHE GLU SEQRES 13 A 175 ALA GLN LYS ILE GLU TRP HIS GLU GLY GLY SER HIS HIS SEQRES 14 A 175 HIS HIS HIS HIS HIS HIS SEQRES 1 B 176 MET HIS HIS HIS HIS HIS HIS HIS HIS GLY GLY SER LEU SEQRES 2 B 176 VAL PRO ARG GLY SER GLY GLY SER GLY LEU ASN ASP ILE SEQRES 3 B 176 PHE GLU ALA GLN LYS ILE GLU TRP HIS GLU GLY GLY SER SEQRES 4 B 176 HIS MET LEU THR ARG GLU GLU VAL GLN ALA ILE ILE ASP SEQRES 5 B 176 GLY HIS VAL ILE GLU VAL LYS TYR ASP SER VAL GLU GLU SEQRES 6 B 176 PHE LEU GLU LYS TYR LYS GLY LYS ILE SER GLU GLU THR SEQRES 7 B 176 ILE GLU LEU ILE GLU LYS LEU ILE GLU LEU THR SER LYS SEQRES 8 B 176 ASP PRO LYS LEU SER ARG LEU PRO LEU ILE PHE MET GLN SEQRES 9 B 176 MET LEU ASP MET PHE ILE GLU ILE MET LYS ASP LEU LYS SEQRES 10 B 176 ASP ARG GLY ILE THR SER GLU GLU ASP ARG LYS LEU LEU SEQRES 11 B 176 TYR ASP VAL PHE LYS GLU ARG PHE GLU GLN TRP PHE ASP SEQRES 12 B 176 SER PHE TRP PRO GLY GLU GLU GLU ILE LYS GLU ILE MET SEQRES 13 B 176 LEU LYS ILE LEU ASP LEU LEU TYR ASN GLU ASP TYR GLU SEQRES 14 B 176 LYS ILE TYR GLU ALA GLU LYS HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET NAG D 1 14 HET NAG D 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 5 HOH *46(H2 O) HELIX 1 AA1 ASP A 364 GLY A 371 5 8 HELIX 2 AA2 THR B 4 HIS B 15 1 12 HELIX 3 AA3 SER B 23 TYR B 31 1 9 HELIX 4 AA4 SER B 36 SER B 51 1 16 HELIX 5 AA5 LYS B 55 SER B 57 5 3 HELIX 6 AA6 ARG B 58 GLY B 81 1 24 HELIX 7 AA7 SER B 84 TRP B 107 1 24 HELIX 8 AA8 GLU B 110 ASN B 126 1 17 SHEET 1 AA1 6 GLU A 320 ILE A 328 0 SHEET 2 AA1 6 GLU A 306 ASP A 317 -1 N SER A 313 O ASP A 324 SHEET 3 AA1 6 TYR A 340 THR A 350 1 O ASN A 346 N LEU A 310 SHEET 4 AA1 6 ASN A 397 GLY A 416 1 O THR A 415 N PHE A 341 SHEET 5 AA1 6 SER A 373 SER A 380 -1 N PHE A 374 O HIS A 414 SHEET 6 AA1 6 SER A 333 CYS A 335 -1 N TYR A 334 O LEU A 379 SHEET 1 AA2 6 GLU A 320 ILE A 328 0 SHEET 2 AA2 6 GLU A 306 ASP A 317 -1 N SER A 313 O ASP A 324 SHEET 3 AA2 6 TYR A 340 THR A 350 1 O ASN A 346 N LEU A 310 SHEET 4 AA2 6 ASN A 397 GLY A 416 1 O THR A 415 N PHE A 341 SHEET 5 AA2 6 CYS A 386 THR A 393 -1 N VAL A 392 O TYR A 398 SHEET 6 AA2 6 THR A 353 ARG A 357 -1 N ARG A 357 O LYS A 389 SSBOND 1 CYS A 335 CYS A 378 1555 1555 2.04 SSBOND 2 CYS A 349 CYS A 352 1555 1555 2.03 SSBOND 3 CYS A 361 CYS A 386 1555 1555 2.03 LINK ND2 ASN A 311 C1 NAG C 1 1555 1555 1.42 LINK ND2 ASN A 331 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.39 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.39 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.40 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 56 1870 CONECT 204 1931 CONECT 235 570 CONECT 356 373 CONECT 373 356 CONECT 443 620 CONECT 570 235 CONECT 620 443 CONECT 1870 56 1871 1881 CONECT 1871 1870 1872 1878 CONECT 1872 1871 1873 1879 CONECT 1873 1872 1874 1880 CONECT 1874 1873 1875 1881 CONECT 1875 1874 1882 CONECT 1876 1877 1878 1883 CONECT 1877 1876 CONECT 1878 1871 1876 CONECT 1879 1872 CONECT 1880 1873 1884 CONECT 1881 1870 1874 CONECT 1882 1875 CONECT 1883 1876 CONECT 1884 1880 1885 1895 CONECT 1885 1884 1886 1892 CONECT 1886 1885 1887 1893 CONECT 1887 1886 1888 1894 CONECT 1888 1887 1889 1895 CONECT 1889 1888 1896 CONECT 1890 1891 1892 1897 CONECT 1891 1890 CONECT 1892 1885 1890 CONECT 1893 1886 CONECT 1894 1887 1898 CONECT 1895 1884 1888 CONECT 1896 1889 CONECT 1897 1890 CONECT 1898 1894 1899 1907 CONECT 1899 1898 1900 1904 CONECT 1900 1899 1901 1905 CONECT 1901 1900 1902 1906 CONECT 1902 1901 1903 1907 CONECT 1903 1902 1908 CONECT 1904 1899 CONECT 1905 1900 1909 CONECT 1906 1901 CONECT 1907 1898 1902 CONECT 1908 1903 1920 CONECT 1909 1905 1910 1918 CONECT 1910 1909 1911 1915 CONECT 1911 1910 1912 1916 CONECT 1912 1911 1913 1917 CONECT 1913 1912 1914 1918 CONECT 1914 1913 1919 CONECT 1915 1910 CONECT 1916 1911 CONECT 1917 1912 CONECT 1918 1909 1913 CONECT 1919 1914 CONECT 1920 1908 1921 1929 CONECT 1921 1920 1922 1926 CONECT 1922 1921 1923 1927 CONECT 1923 1922 1924 1928 CONECT 1924 1923 1925 1929 CONECT 1925 1924 1930 CONECT 1926 1921 CONECT 1927 1922 CONECT 1928 1923 CONECT 1929 1920 1924 CONECT 1930 1925 CONECT 1931 204 1932 1942 CONECT 1932 1931 1933 1939 CONECT 1933 1932 1934 1940 CONECT 1934 1933 1935 1941 CONECT 1935 1934 1936 1942 CONECT 1936 1935 1943 CONECT 1937 1938 1939 1944 CONECT 1938 1937 CONECT 1939 1932 1937 CONECT 1940 1933 CONECT 1941 1934 1945 CONECT 1942 1931 1935 CONECT 1943 1936 CONECT 1944 1937 CONECT 1945 1941 1946 1956 CONECT 1946 1945 1947 1953 CONECT 1947 1946 1948 1954 CONECT 1948 1947 1949 1955 CONECT 1949 1948 1950 1956 CONECT 1950 1949 1957 CONECT 1951 1952 1953 1958 CONECT 1952 1951 CONECT 1953 1946 1951 CONECT 1954 1947 CONECT 1955 1948 CONECT 1956 1945 1949 CONECT 1957 1950 CONECT 1958 1951 MASTER 290 0 7 8 12 0 0 6 2002 2 97 28 END