HEADER DNA 03-MAY-93 123D TITLE DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR TITLE 2 D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*CP*AP*GP*GP*CP*(5CM)P*TP*GP*G)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS B-DNA, DOUBLE HELIX, MODIFIED, DNA EXPDTA X-RAY DIFFRACTION AUTHOR M.HAHN,U.HEINEMANN REVDAT 4 07-FEB-24 123D 1 LINK REVDAT 3 18-APR-18 123D 1 REMARK REVDAT 2 24-FEB-09 123D 1 VERSN REVDAT 1 15-OCT-93 123D 0 JRNL AUTH M.HAHN,U.HEINEMANN JRNL TITL DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF JRNL TITL 2 MODELS FOR D(CCAGGCM5CTGG) DERIVED FROM NUCLSQ, TNT AND JRNL TITL 3 X-PLOR. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 49 468 1993 JRNL REFN ISSN 0907-4449 JRNL PMID 15299506 JRNL DOI 10.1107/S0907444993004858 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH U.HEINEMANN,M.HAHN REMARK 1 TITL C-C-A-G-G-C-M5C-T-G-G: HELICAL FINE STRUCTURE, HYDRATION, REMARK 1 TITL 2 AND COMPARISON WITH C-C-A-G-G-C-C-T-G-G REMARK 1 REF J.BIOL.CHEM. V. 267 7332 1992 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH U.HEINEMANN,C.ALINGS,M.BANSAL REMARK 1 TITL DOUBLE HELIX CONFORMATION, GROOVE DIMENSIONS AND LIGAND REMARK 1 TITL 2 BINDING POTENTIAL OF A G/C-STRETCH IN B-DNA REMARK 1 REF EMBO J. V. 11 1931 1992 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 3 REMARK 1 AUTH U.HEINEMANN,C.ALINGS REMARK 1 TITL THE CONFORMATION OF A B-DNA DECAMER IS MAINLY DETERMINED BY REMARK 1 TITL 2 ITS SEQUENCE AND NOT BY CRYSTAL ENVIRONMENT REMARK 1 REF EMBO J. V. 10 35 1991 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 4 REMARK 1 AUTH U.HEINEMANN,C.ALINGS REMARK 1 TITL CRYSTALLOGRAPHIC STUDY OF ONE TURN OF G/C-RICH B-DNA REMARK 1 REF J.MOL.BIOL. V. 210 369 1989 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 3799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 406 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 123D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000170056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : ENRAF-NONIUS CAD4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4704 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.50, MICRODIALYSIS, TEMPERATURE REMARK 280 277.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 98 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 99 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 100 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C8 DA A 3 O HOH A 87 1.00 REMARK 500 N9 DA A 3 O HOH A 87 1.51 REMARK 500 N7 DA A 3 O HOH A 87 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 1 N1 DC A 1 C6 -0.042 REMARK 500 DC A 2 C2 DC A 2 N3 0.052 REMARK 500 DA A 3 C5 DA A 3 C6 -0.061 REMARK 500 DG A 4 N9 DG A 4 C4 0.051 REMARK 500 DG A 5 C5 DG A 5 N7 0.055 REMARK 500 DT A 8 O4' DT A 8 C4' -0.073 REMARK 500 DT A 8 C2 DT A 8 O2 -0.049 REMARK 500 DT A 8 C5 DT A 8 C7 0.053 REMARK 500 DG A 9 C5' DG A 9 C4' 0.059 REMARK 500 DG A 9 C2 DG A 9 N3 -0.051 REMARK 500 DG A 10 C5' DG A 10 C4' 0.058 REMARK 500 DG A 10 C2' DG A 10 C1' 0.069 REMARK 500 DG A 10 C5 DG A 10 N7 -0.066 REMARK 500 DC B 11 N1 DC B 11 C2 -0.072 REMARK 500 DC B 12 C4 DC B 12 N4 -0.066 REMARK 500 DC B 12 N1 DC B 12 C2 -0.075 REMARK 500 DC B 12 N1 DC B 12 C6 -0.051 REMARK 500 DA B 13 N3 DA B 13 C4 0.036 REMARK 500 DA B 13 C4 DA B 13 C5 -0.054 REMARK 500 DA B 13 C6 DA B 13 N6 -0.061 REMARK 500 DG B 15 O3' DG B 15 C3' -0.037 REMARK 500 DC B 16 O4' DC B 16 C4' -0.079 REMARK 500 DT B 18 N1 DT B 18 C2 0.050 REMARK 500 DG B 20 N1 DG B 20 C2 -0.065 REMARK 500 DG B 20 C4 DG B 20 C5 -0.064 REMARK 500 DG B 20 N7 DG B 20 C8 -0.036 REMARK 500 DG B 20 C8 DG B 20 N9 -0.059 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 C4' - C3' - C2' ANGL. DEV. = -5.7 DEGREES REMARK 500 DC A 1 O4' - C1' - C2' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC A 1 C6 - N1 - C2 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC A 1 N1 - C2 - O2 ANGL. DEV. = 6.7 DEGREES REMARK 500 DC A 1 N3 - C2 - O2 ANGL. DEV. = -5.3 DEGREES REMARK 500 DC A 1 C3' - O3' - P ANGL. DEV. = 11.3 DEGREES REMARK 500 DC A 2 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC A 2 C6 - N1 - C2 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC A 2 N3 - C4 - C5 ANGL. DEV. = -2.5 DEGREES REMARK 500 DC A 2 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 DA A 3 C8 - N9 - C4 ANGL. DEV. = -3.6 DEGREES REMARK 500 DA A 3 N9 - C4 - C5 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA A 3 C3' - O3' - P ANGL. DEV. = 9.9 DEGREES REMARK 500 DG A 4 C1' - O4' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 DG A 4 C6 - N1 - C2 ANGL. DEV. = -3.9 DEGREES REMARK 500 DG A 4 C5 - C6 - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG A 4 C8 - N9 - C4 ANGL. DEV. = -2.9 DEGREES REMARK 500 DG A 4 N3 - C4 - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG A 4 C3' - O3' - P ANGL. DEV. = 12.5 DEGREES REMARK 500 DC A 6 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DC A 6 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 5CM A 7 C3' - O3' - P ANGL. DEV. = 8.8 DEGREES REMARK 500 DT A 8 C6 - C5 - C7 ANGL. DEV. = -5.2 DEGREES REMARK 500 DG A 9 C5' - C4' - O4' ANGL. DEV. = 8.7 DEGREES REMARK 500 DG A 9 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG A 9 N7 - C8 - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG A 9 C8 - N9 - C4 ANGL. DEV. = -4.0 DEGREES REMARK 500 DG A 10 C4' - C3' - C2' ANGL. DEV. = -4.2 DEGREES REMARK 500 DG A 10 O4' - C1' - N9 ANGL. DEV. = 7.3 DEGREES REMARK 500 DG A 10 C6 - N1 - C2 ANGL. DEV. = -6.8 DEGREES REMARK 500 DG A 10 C4 - C5 - C6 ANGL. DEV. = -4.0 DEGREES REMARK 500 DG A 10 C5 - C6 - N1 ANGL. DEV. = 6.9 DEGREES REMARK 500 DG A 10 C4 - C5 - N7 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG A 10 N1 - C6 - O6 ANGL. DEV. = -4.6 DEGREES REMARK 500 DC B 11 N3 - C4 - C5 ANGL. DEV. = -2.4 DEGREES REMARK 500 DC B 11 N1 - C2 - O2 ANGL. DEV. = 5.8 DEGREES REMARK 500 DC B 12 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC B 12 N3 - C4 - C5 ANGL. DEV. = -2.7 DEGREES REMARK 500 DC B 12 N1 - C2 - O2 ANGL. DEV. = 7.1 DEGREES REMARK 500 DC B 12 N3 - C2 - O2 ANGL. DEV. = -9.3 DEGREES REMARK 500 DA B 13 N1 - C2 - N3 ANGL. DEV. = -4.4 DEGREES REMARK 500 DA B 13 N9 - C4 - C5 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG B 14 O4' - C1' - C2' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG B 14 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG B 14 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DG B 15 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC B 16 O4' - C4' - C3' ANGL. DEV. = 5.6 DEGREES REMARK 500 DC B 16 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC B 16 C5 - C6 - N1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 63 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC A 1 0.14 SIDE CHAIN REMARK 500 DC A 6 0.09 SIDE CHAIN REMARK 500 DG A 9 0.08 SIDE CHAIN REMARK 500 DG A 10 0.12 SIDE CHAIN REMARK 500 DC B 11 0.10 SIDE CHAIN REMARK 500 DA B 13 0.07 SIDE CHAIN REMARK 500 DG B 14 0.08 SIDE CHAIN REMARK 500 DG B 15 0.07 SIDE CHAIN REMARK 500 DC B 16 0.09 SIDE CHAIN REMARK 500 DT B 18 0.07 SIDE CHAIN REMARK 500 DG B 19 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 123D A 1 10 PDB 123D 123D 1 10 DBREF 123D B 11 20 PDB 123D 123D 11 20 SEQRES 1 A 10 DC DC DA DG DG DC 5CM DT DG DG SEQRES 1 B 10 DC DC DA DG DG DC 5CM DT DG DG MODRES 123D 5CM A 7 DC MODRES 123D 5CM B 17 DC HET 5CM A 7 20 HET 5CM B 17 20 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE FORMUL 1 5CM 2(C10 H16 N3 O7 P) FORMUL 3 HOH *80(H2 O) LINK O3' DC A 6 P 5CM A 7 1555 1555 1.62 LINK O3' 5CM A 7 P DT A 8 1555 1555 1.56 LINK O3' DC B 16 P 5CM B 17 1555 1555 1.61 LINK O3' 5CM B 17 P DT B 18 1555 1555 1.59 CRYST1 53.770 53.770 34.350 90.00 90.00 120.00 P 6 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018598 0.010737 0.000000 0.00000 SCALE2 0.000000 0.021475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029112 0.00000