HEADER TRANSCRIPTION REGULATION 05-MAY-93 125D OBSLTE 15-APR-98 125D 1AW6 TITLE SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF CD=2=-GAL4 TITLE 2 FROM S. CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: NULL; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS TRANSCRIPTION REGULATION EXPDTA NMR, 22 STRUCTURES AUTHOR J.D.BALEJA,G.WAGNER REVDAT 1 31-JAN-94 125D 0 JRNL AUTH J.D.BALEJA,R.MARMORSTEIN,S.C.HARRISON,G.WAGNER JRNL TITL SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF JRNL TITL 2 CD=2=-GAL4 FROM S. CEREVISIAE JRNL REF NATURE V. 356 450 1992 JRNL REFN ASTM NATUAS UK ISSN 0028-0836 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.MAU,J.D.BALEJA,G.WAGNER REMARK 1 TITL EFFECTS OF DNA BINDING AND METAL SUBSTITUTION ON REMARK 1 TITL 2 THE DYNAMICS OF THE GAL4 DNA-BINDING DOMAIN AS REMARK 1 TITL 3 STUDIED BY AMIDE PROTON EXCHANGE REMARK 1 REF PROTEIN SCI. V. 1 1403 1992 REMARK 1 REFN ASTM PRCIEI US ISSN 0961-8368 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 125D COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 125D TWENTY-FIVE STRUCTURES WERE CALCULATED FROM NMR DATA REMARK 5 125D USING THE DISTANCE GEOMETRY PROGRAM PACKAGE DG-II. REMARK 5 125D TWENTY-TWO STRUCTURES WERE REFINED USING SIMULATED REMARK 5 125D ANNEALING. THESE ARE INCLUDED IN THE COORDINATE REMARK 5 LISTING. 125D THE STRUCTURE DESIGNATED AS #9 HAS THE LOWEST REMARK 5 OVERALL 125D VIOLATION WITH RESPECT TO COVALENT GEOMETRY REMARK 5 AND 125D INTERPROTON DISTANCE RESTRAINTS. 125D REMARK 6 REMARK 6 125D POSITIONS OF METHYL CARBONS ARE REPORTED AT THE CENTER REMARK 6 OF 125D METHYL PROTONS. THE TRUE CARBON POSITION LIES 0.36 REMARK 6 125D ANGSTROMS CLOSER IN THE VECTOR BETWEEN THE REPORTED REMARK 6 125D COORDINATES AND THE ATOM TO WHICH IT IS ATTACHED. 125D REMARK 6 THE STRUCTURES ARE UNDER REFINEMENT AND WILL BE REPLACED REMARK 6 125D WITH THIS CORRECTED. 125D REMARK 7 REMARK 7 125D AN ADDITIONAL 66TH RESIDUE (PHENYLALANINE), NOT REMARK 7 NORMALLY 125D PART OF THE GAL4 AMINO ACID SEQUENCE, IS REMARK 7 INTRODUCED AS THE 125D C-TERMINAL RESIDUE BY A CLONING REMARK 7 ARTIFACT. STRUCTURES WERE 125D ONLY CALCULATED FOR RESIDUES REMARK 7 1 - 43. ONLY RESIDUES 9 - 40 125D ARE SUFFICIENTLY WELL REMARK 7 ORDERED TO ADOPT A STABLE PROTEIN 125D FOLD. 125D REMARK 8 REMARK 8 125D HELIX A IS DEFINED AS PHI=-60+/-60, AND PSI=-45+/-60. REMARK 8 125D REMARK 9 REMARK 9 125D HELIX B IS DEFINED AS PHI=-60+/-60, AND PSI=-45+/-60. REMARK 9 125D REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : NULL REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 7 TYR 40 CB - CA - C ANGL. DEV. = 14.2 DEGREES REMARK 500 12 CYS 21 N - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 13 CYS 21 N - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 13 LYS 23 N - CA - C ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU 4 157.87 70.82 REMARK 500 2 LYS 20 145.02 74.32 REMARK 500 3 LEU 3 -53.87 88.20 REMARK 500 3 LEU 4 129.20 84.97 REMARK 500 3 SER 6 137.61 65.27 REMARK 500 3 LYS 20 107.97 148.84 REMARK 500 4 LEU 4 135.80 87.35 REMARK 500 6 LYS 20 140.69 69.40 REMARK 500 7 LYS 2 -109.04 59.46 REMARK 500 7 LEU 4 120.18 74.57 REMARK 500 7 LYS 20 149.23 70.44 REMARK 500 8 LYS 2 -95.82 -173.72 REMARK 500 9 LYS 2 -135.34 82.88 REMARK 500 9 LYS 20 134.18 76.03 REMARK 500 10 LYS 20 121.40 74.64 REMARK 500 11 LYS 20 149.25 71.01 REMARK 500 15 SER 5 160.92 76.99 REMARK 500 17 ALA 10 83.16 127.02 REMARK 500 19 LYS 2 135.52 72.91 REMARK 500 19 LEU 4 -95.15 61.70 REMARK 500 21 LEU 4 -103.57 53.02 REMARK 500 21 SER 6 160.23 67.42 REMARK 500 21 LYS 20 52.96 149.64 REMARK 500 22 LEU 3 -91.53 77.54 SEQRES 1 43 MET LYS LEU LEU SER SER ILE GLU GLN ALA CYS ASP ILE SEQRES 2 43 CYS ARG LEU LYS LYS LEU LYS CYS SER LYS GLU LYS PRO SEQRES 3 43 LYS CYS ALA LYS CYS LEU LYS ASN ASN TRP GLU CYS ARG SEQRES 4 43 TYR SER PRO LYS FTNOTE 1 CIS PROLINE - PRO 26 MODEL 1 HET CD 44 1 HET CD 45 1 HETNAM CD CADMIUM ION FORMUL 2 CD 2(CD 2+) HELIX 1 A ASP 12 LYS 17 1SEE REMARK 5. 6 HELIX 2 B ALA 29 ASN 34 1SEE REMARK 6. 6 CISPEP 1 LYS 25 PRO 26 1 0.11 CISPEP 2 LYS 25 PRO 26 2 0.35 CISPEP 3 LYS 25 PRO 26 3 1.84 CISPEP 4 LYS 25 PRO 26 4 0.50 CISPEP 5 LYS 25 PRO 26 5 2.33 CISPEP 6 LYS 25 PRO 26 6 0.35 CISPEP 7 LYS 25 PRO 26 7 1.24 CISPEP 8 LYS 25 PRO 26 8 0.75 CISPEP 9 LYS 25 PRO 26 9 0.19 CISPEP 10 LYS 25 PRO 26 10 0.10 CISPEP 11 LYS 25 PRO 26 11 0.48 CISPEP 12 LYS 25 PRO 26 12 0.02 CISPEP 13 LYS 25 PRO 26 13 0.65 CISPEP 14 LYS 25 PRO 26 14 0.52 CISPEP 15 LYS 25 PRO 26 15 0.76 CISPEP 16 LYS 25 PRO 26 16 0.75 CISPEP 17 LYS 25 PRO 26 17 0.25 CISPEP 18 LYS 25 PRO 26 18 1.32 CISPEP 19 LYS 25 PRO 26 19 0.44 CISPEP 20 LYS 25 PRO 26 20 1.08 CISPEP 21 LYS 25 PRO 26 21 0.58 CISPEP 22 LYS 25 PRO 26 22 0.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1