HEADER TOXIN, PROTEIN BINDING 23-MAR-26 12AJ TITLE CITROBACTER RODENTIUM CONTACT DEPENDENT GROWTH INHIBITION (CDI) TOXIN TITLE 2 (CDIA-CT) IN COMPLEX WITH E. COLI GYRB COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B; COMPND 3 CHAIN: B; COMPND 4 EC: 5.6.2.2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CONTACT-DEPENDENT INHIBITOR A; COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GYRB, HVW04_15435; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: CITROBACTER RODENTIUM; SOURCE 9 ORGANISM_TAXID: 67825; SOURCE 10 GENE: STBD, E2R62_11320; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOXIN, PEPTIDASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR B.J.CUTHBERT,C.D.HARDY,J.R.KENNADY,C.W.GOULDING,C.S.HAYES,D.Q.NHAN REVDAT 1 01-JUL-26 12AJ 0 JRNL AUTH B.J.CUTHBERT,C.W.GOULDING,C.S.HAYES,D.Q.NHAN JRNL TITL CITROBACTER RODENTIUM CONTACT DEPENDENT GROWTH INHIBITION JRNL TITL 2 (CDI) ENTRY AND TOXIN (CDIA-CT) DOMAINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 21411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6900 - 4.9200 0.98 1325 156 0.1823 0.2091 REMARK 3 2 4.9200 - 3.9100 1.00 1315 146 0.1421 0.1764 REMARK 3 3 3.9100 - 3.4100 0.97 1285 140 0.1571 0.1927 REMARK 3 4 3.4100 - 3.1000 0.98 1285 141 0.1717 0.2323 REMARK 3 5 3.1000 - 2.8800 0.99 1314 140 0.1895 0.2145 REMARK 3 6 2.8800 - 2.7100 1.00 1303 152 0.1885 0.2185 REMARK 3 7 2.7100 - 2.5700 0.99 1275 141 0.1847 0.2390 REMARK 3 8 2.5700 - 2.4600 0.97 1285 135 0.1983 0.1980 REMARK 3 9 2.4600 - 2.3700 0.98 1291 147 0.1859 0.2513 REMARK 3 10 2.3700 - 2.2900 0.99 1279 147 0.1906 0.2590 REMARK 3 11 2.2900 - 2.2100 0.99 1297 136 0.1811 0.2054 REMARK 3 12 2.2100 - 2.1500 0.99 1269 146 0.1915 0.2423 REMARK 3 13 2.1500 - 2.0900 0.99 1321 136 0.2028 0.2387 REMARK 3 14 2.0900 - 2.0400 0.98 1252 151 0.1969 0.2977 REMARK 3 15 2.0400 - 2.0000 0.90 1171 130 0.1922 0.2419 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.194 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.334 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2684 REMARK 3 ANGLE : 0.659 3641 REMARK 3 CHIRALITY : 0.054 399 REMARK 3 PLANARITY : 0.006 473 REMARK 3 DIHEDRAL : 16.301 941 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN B AND RESID 11:34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.064 -11.893 25.007 REMARK 3 T TENSOR REMARK 3 T11: 0.2490 T22: 0.1783 REMARK 3 T33: 0.2738 T12: -0.0033 REMARK 3 T13: 0.0189 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.8478 L22: 2.2167 REMARK 3 L33: 6.4883 L12: 0.2806 REMARK 3 L13: 2.8749 L23: 1.7964 REMARK 3 S TENSOR REMARK 3 S11: 0.1816 S12: 0.0180 S13: -0.0604 REMARK 3 S21: 0.3971 S22: -0.1599 S23: 0.2017 REMARK 3 S31: 0.4866 S32: -0.0674 S33: 0.0454 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 35:97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.146 6.394 20.934 REMARK 3 T TENSOR REMARK 3 T11: 0.2442 T22: 0.2806 REMARK 3 T33: 0.2271 T12: 0.0383 REMARK 3 T13: 0.0374 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 2.2622 L22: 3.4180 REMARK 3 L33: 1.6836 L12: -0.0611 REMARK 3 L13: 1.1692 L23: -0.5698 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: 0.4801 S13: 0.0553 REMARK 3 S21: -0.4248 S22: -0.1014 S23: -0.2300 REMARK 3 S31: -0.0529 S32: 0.2268 S33: 0.0761 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 98:120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.709 -3.470 12.875 REMARK 3 T TENSOR REMARK 3 T11: 0.3126 T22: 0.3561 REMARK 3 T33: 0.3687 T12: -0.0887 REMARK 3 T13: -0.0078 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 6.6612 L22: 0.3452 REMARK 3 L33: 5.7469 L12: -0.1189 REMARK 3 L13: -3.3980 L23: 1.2769 REMARK 3 S TENSOR REMARK 3 S11: 0.3300 S12: 0.2241 S13: 0.6633 REMARK 3 S21: -0.1816 S22: 0.4864 S23: -0.7637 REMARK 3 S31: -0.7530 S32: 0.7691 S33: -0.4744 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 121:184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.442 5.668 24.409 REMARK 3 T TENSOR REMARK 3 T11: 0.1637 T22: 0.1804 REMARK 3 T33: 0.2067 T12: 0.0079 REMARK 3 T13: 0.0054 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 2.1563 L22: 2.7493 REMARK 3 L33: 1.8114 L12: -0.0707 REMARK 3 L13: 0.2704 L23: 0.5526 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: 0.0742 S13: 0.0286 REMARK 3 S21: 0.0025 S22: -0.0106 S23: 0.2853 REMARK 3 S31: -0.0549 S32: -0.1682 S33: -0.0298 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 185:219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.160 11.491 33.328 REMARK 3 T TENSOR REMARK 3 T11: 0.2099 T22: 0.1844 REMARK 3 T33: 0.2517 T12: -0.0033 REMARK 3 T13: -0.0375 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 4.4345 L22: 2.4085 REMARK 3 L33: 4.2595 L12: 0.3274 REMARK 3 L13: -2.1870 L23: 0.2264 REMARK 3 S TENSOR REMARK 3 S11: 0.0553 S12: -0.0562 S13: 0.1298 REMARK 3 S21: 0.1460 S22: -0.0063 S23: -0.2879 REMARK 3 S31: -0.1923 S32: 0.3685 S33: -0.0572 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 181:202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.726 -14.834 -4.310 REMARK 3 T TENSOR REMARK 3 T11: 0.4984 T22: 0.5067 REMARK 3 T33: 0.2787 T12: -0.1290 REMARK 3 T13: 0.0410 T23: -0.0531 REMARK 3 L TENSOR REMARK 3 L11: 1.9784 L22: 1.7391 REMARK 3 L33: 3.5798 L12: 0.0604 REMARK 3 L13: -0.2567 L23: -0.3946 REMARK 3 S TENSOR REMARK 3 S11: -0.1420 S12: 0.7889 S13: -0.0590 REMARK 3 S21: -0.9707 S22: 0.3135 S23: -0.2736 REMARK 3 S31: 0.4311 S32: 0.1299 S33: 0.0032 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 203:262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.056 -14.985 7.156 REMARK 3 T TENSOR REMARK 3 T11: 0.2916 T22: 0.3115 REMARK 3 T33: 0.2228 T12: -0.0641 REMARK 3 T13: -0.0083 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 2.3648 L22: 2.3779 REMARK 3 L33: 2.4047 L12: -0.0468 REMARK 3 L13: -0.7703 L23: -1.0176 REMARK 3 S TENSOR REMARK 3 S11: -0.0934 S12: 0.1513 S13: -0.1623 REMARK 3 S21: -0.3988 S22: 0.1618 S23: 0.1184 REMARK 3 S31: 0.2816 S32: 0.0195 S33: -0.0614 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 263:301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.973 -23.222 9.332 REMARK 3 T TENSOR REMARK 3 T11: 0.5355 T22: 0.3917 REMARK 3 T33: 0.2711 T12: 0.0463 REMARK 3 T13: 0.0665 T23: -0.1265 REMARK 3 L TENSOR REMARK 3 L11: 2.9431 L22: 2.7081 REMARK 3 L33: 3.4626 L12: -0.7237 REMARK 3 L13: -1.0332 L23: -0.6613 REMARK 3 S TENSOR REMARK 3 S11: -0.3096 S12: 0.3996 S13: -0.5951 REMARK 3 S21: -0.4031 S22: -0.0800 S23: -0.0389 REMARK 3 S31: 1.3535 S32: 0.3701 S33: 0.2172 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 12AJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-26. REMARK 100 THE DEPOSITION ID IS D_1000306336. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-26 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21456 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.16100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, PH 5.5, 25% PEG-3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.47750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 TYR B 5 REMARK 465 ASP B 6 REMARK 465 SER B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 ASP B 105 REMARK 465 ASP B 106 REMARK 465 ASN B 107 REMARK 465 SER B 108 REMARK 465 TYR B 109 REMARK 465 LYS B 110 REMARK 465 VAL B 111 REMARK 465 SER B 112 REMARK 465 GLY B 113 REMARK 465 GLY B 114 REMARK 465 GLY B 220 REMARK 465 GLY B 221 REMARK 465 LEU B 222 REMARK 465 GLU B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 MET A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 SER A 145 REMARK 465 SER A 146 REMARK 465 GLY A 147 REMARK 465 VAL A 148 REMARK 465 ASP A 149 REMARK 465 LEU A 150 REMARK 465 GLY A 151 REMARK 465 THR A 152 REMARK 465 GLU A 153 REMARK 465 ASN A 154 REMARK 465 LEU A 155 REMARK 465 TYR A 156 REMARK 465 PHE A 157 REMARK 465 GLN A 158 REMARK 465 ALA A 159 REMARK 465 GLY A 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 LEU B 115 CG CD1 CD2 REMARK 470 GLN B 128 CG CD OE1 NE2 REMARK 470 GLU B 161 CG CD OE1 OE2 REMARK 470 ASN A 162 CG OD1 ND2 REMARK 470 ASP A 167 CG OD1 OD2 REMARK 470 ILE A 169 CG1 CG2 CD1 REMARK 470 VAL A 170 CG1 CG2 REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 GLN A 203 CG CD OE1 NE2 REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 SER A 267 OG REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 LYS A 278 CG CD CE NZ REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 GLN A 301 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 178 -74.57 67.67 REMARK 500 ASN B 198 78.75 -105.60 REMARK 500 VAL A 170 108.67 -59.25 REMARK 500 SER A 267 2.46 -64.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8SSM RELATED DB: PDB REMARK 900 CDI TOXIN/IMMUNITY COMPLEX REMARK 900 RELATED ID: 8SSK RELATED DB: PDB REMARK 900 CDI ENTRY AND TOXIN DOMAINS DBREF1 12AJ B 2 221 UNP A0A7D7JXT0_ECOLX DBREF2 12AJ B A0A7D7JXT0 2 221 DBREF1 12AJ A 159 301 UNP A0A482PFX0_CITRO DBREF2 12AJ A A0A482PFX0 3696 3838 SEQADV 12AJ MET B 0 UNP A0A7D7JXT INITIATING METHIONINE SEQADV 12AJ ALA B 1 UNP A0A7D7JXT EXPRESSION TAG SEQADV 12AJ LEU B 222 UNP A0A7D7JXT EXPRESSION TAG SEQADV 12AJ GLU B 223 UNP A0A7D7JXT EXPRESSION TAG SEQADV 12AJ HIS B 224 UNP A0A7D7JXT EXPRESSION TAG SEQADV 12AJ HIS B 225 UNP A0A7D7JXT EXPRESSION TAG SEQADV 12AJ HIS B 226 UNP A0A7D7JXT EXPRESSION TAG SEQADV 12AJ HIS B 227 UNP A0A7D7JXT EXPRESSION TAG SEQADV 12AJ HIS B 228 UNP A0A7D7JXT EXPRESSION TAG SEQADV 12AJ HIS B 229 UNP A0A7D7JXT EXPRESSION TAG SEQADV 12AJ MET A 138 UNP A0A482PFX INITIATING METHIONINE SEQADV 12AJ HIS A 139 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ HIS A 140 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ HIS A 141 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ HIS A 142 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ HIS A 143 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ HIS A 144 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ SER A 145 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ SER A 146 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ GLY A 147 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ VAL A 148 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ ASP A 149 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ LEU A 150 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ GLY A 151 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ THR A 152 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ GLU A 153 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ ASN A 154 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ LEU A 155 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ TYR A 156 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ PHE A 157 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ GLN A 158 UNP A0A482PFX EXPRESSION TAG SEQADV 12AJ ALA A 183 UNP A0A482PFX CYS 3720 ENGINEERED MUTATION SEQRES 1 B 230 MET ALA SER ASN SER TYR ASP SER SER SER ILE LYS VAL SEQRES 2 B 230 LEU LYS GLY LEU ASP ALA VAL ARG LYS ARG PRO GLY MET SEQRES 3 B 230 TYR ILE GLY ASP THR ASP ASP GLY THR GLY LEU HIS HIS SEQRES 4 B 230 MET VAL PHE GLU VAL VAL ASP ASN ALA ILE ASP GLU ALA SEQRES 5 B 230 LEU ALA GLY HIS CYS LYS GLU ILE ILE VAL THR ILE HIS SEQRES 6 B 230 ALA ASP ASN SER VAL SER VAL GLN ASP ASP GLY ARG GLY SEQRES 7 B 230 ILE PRO THR GLY ILE HIS PRO GLU GLU GLY VAL SER ALA SEQRES 8 B 230 ALA GLU VAL ILE MET THR VAL LEU HIS ALA GLY GLY LYS SEQRES 9 B 230 PHE ASP ASP ASN SER TYR LYS VAL SER GLY GLY LEU HIS SEQRES 10 B 230 GLY VAL GLY VAL SER VAL VAL ASN ALA LEU SER GLN LYS SEQRES 11 B 230 LEU GLU LEU VAL ILE GLN ARG GLU GLY LYS ILE HIS ARG SEQRES 12 B 230 GLN ILE TYR GLU HIS GLY VAL PRO GLN ALA PRO LEU ALA SEQRES 13 B 230 VAL THR GLY GLU THR GLU LYS THR GLY THR MET VAL ARG SEQRES 14 B 230 PHE TRP PRO SER LEU GLU THR PHE THR ASN VAL THR GLU SEQRES 15 B 230 PHE GLU TYR GLU ILE LEU ALA LYS ARG LEU ARG GLU LEU SEQRES 16 B 230 SER PHE LEU ASN SER GLY VAL SER ILE ARG LEU ARG ASP SEQRES 17 B 230 LYS ARG ASP GLY LYS GLU ASP HIS PHE HIS TYR GLU GLY SEQRES 18 B 230 GLY LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 164 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 164 GLY THR GLU ASN LEU TYR PHE GLN ALA GLY GLY ASN TRP SEQRES 3 A 164 ASN VAL LEU ASP GLU ILE VAL ASP PRO ASN VAL VAL LYS SEQRES 4 A 164 GLN SER THR PRO THR GLY ALA GLY GLY ALA CYS GLY GLU SEQRES 5 A 164 MET MET LEU LYS ASP ARG ASN ILE PHE VAL ASP GLN THR SEQRES 6 A 164 GLN ILE GLY THR GLY LEU LYS SER PRO GLU GLN LEU ALA SEQRES 7 A 164 ARG ASP LEU ALA LYS ASN SER GLY SER SER TRP SER GLY SEQRES 8 A 164 GLY PHE VAL GLY PHE GLU ALA TYR ASP ALA LEU ASN LYS SEQRES 9 A 164 THR GLY SER TRP SER ALA MET MET TRP ASP GLN GLY SER SEQRES 10 A 164 LYS ILE GLY HIS TRP VAL VAL VAL LYS GLY THR ASP SER SEQRES 11 A 164 LYS GLY ASN VAL SER ILE TYR ASP PRO TRP LYS GLY THR SEQRES 12 A 164 SER TYR LYS MET THR ASP LYS GLU PHE LYS GLY THR TRP SEQRES 13 A 164 ASN GLY ASN ALA VAL PHE ASN GLN HET GOL B 300 6 HET GOL B 301 6 HET GOL B 302 6 HET GOL B 303 6 HET GOL B 304 6 HET GOL B 305 6 HET GOL A 401 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 7(C3 H8 O3) FORMUL 10 HOH *131(H2 O) HELIX 1 AA1 LEU B 16 ARG B 22 1 7 HELIX 2 AA2 PRO B 23 GLY B 28 1 6 HELIX 3 AA3 GLY B 33 ALA B 53 1 21 HELIX 4 AA4 SER B 89 VAL B 97 1 9 HELIX 5 AA5 GLY B 119 LEU B 126 1 8 HELIX 6 AA6 GLU B 183 ASN B 198 1 16 HELIX 7 AA7 GLY A 182 ASP A 194 1 13 HELIX 8 AA8 ASP A 200 GLY A 205 1 6 HELIX 9 AA9 SER A 210 GLY A 223 1 14 HELIX 10 AB1 GLY A 232 GLU A 234 5 3 HELIX 11 AB2 ALA A 235 THR A 242 1 8 HELIX 12 AB3 THR A 285 GLY A 291 1 7 SHEET 1 AA1 3 VAL B 149 PRO B 150 0 SHEET 2 AA1 3 LYS B 139 GLU B 146 -1 N GLU B 146 O VAL B 149 SHEET 3 AA1 3 ALA B 155 GLU B 159 -1 O THR B 157 N ILE B 140 SHEET 1 AA2 8 VAL B 149 PRO B 150 0 SHEET 2 AA2 8 LYS B 139 GLU B 146 -1 N GLU B 146 O VAL B 149 SHEET 3 AA2 8 SER B 127 ARG B 136 -1 N ILE B 134 O HIS B 141 SHEET 4 AA2 8 GLY B 164 PRO B 171 -1 O ARG B 168 N GLU B 131 SHEET 5 AA2 8 VAL B 69 ASP B 73 -1 N VAL B 71 O VAL B 167 SHEET 6 AA2 8 GLU B 58 ILE B 63 -1 N ILE B 60 O GLN B 72 SHEET 7 AA2 8 SER B 202 ASP B 207 1 O ARG B 204 N VAL B 61 SHEET 8 AA2 8 GLU B 213 PHE B 216 -1 O PHE B 216 N ILE B 203 SHEET 1 AA3 7 LEU A 166 VAL A 170 0 SHEET 2 AA3 7 THR A 280 MET A 284 -1 O LYS A 283 N LEU A 166 SHEET 3 AA3 7 VAL A 271 ASP A 275 -1 N ASP A 275 O THR A 280 SHEET 4 AA3 7 HIS A 258 THR A 265 -1 N GLY A 264 O SER A 272 SHEET 5 AA3 7 TRP A 245 MET A 249 -1 N TRP A 245 O VAL A 262 SHEET 6 AA3 7 TRP A 293 PHE A 299 -1 O ASN A 294 N MET A 248 SHEET 7 AA3 7 SER A 227 PHE A 230 -1 N SER A 227 O PHE A 299 CRYST1 36.445 64.955 70.154 90.00 101.69 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027439 0.000000 0.005678 0.00000 SCALE2 0.000000 0.015395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014556 0.00000 CONECT 2590 2591 2592 CONECT 2591 2590 CONECT 2592 2590 2593 2594 CONECT 2593 2592 CONECT 2594 2592 2595 CONECT 2595 2594 CONECT 2596 2597 2598 CONECT 2597 2596 CONECT 2598 2596 2599 2600 CONECT 2599 2598 CONECT 2600 2598 2601 CONECT 2601 2600 CONECT 2602 2603 2604 CONECT 2603 2602 CONECT 2604 2602 2605 2606 CONECT 2605 2604 CONECT 2606 2604 2607 CONECT 2607 2606 CONECT 2608 2609 2610 CONECT 2609 2608 CONECT 2610 2608 2611 2612 CONECT 2611 2610 CONECT 2612 2610 2613 CONECT 2613 2612 CONECT 2614 2615 2616 CONECT 2615 2614 CONECT 2616 2614 2617 2618 CONECT 2617 2616 CONECT 2618 2616 2619 CONECT 2619 2618 CONECT 2620 2621 2622 CONECT 2621 2620 CONECT 2622 2620 2623 2624 CONECT 2623 2622 CONECT 2624 2622 2625 CONECT 2625 2624 CONECT 2626 2627 2628 CONECT 2627 2626 CONECT 2628 2626 2629 2630 CONECT 2629 2628 CONECT 2630 2628 2631 CONECT 2631 2630 MASTER 433 0 7 12 18 0 0 6 2728 2 42 31 END