HEADER CARBOHYDRATE 30-MAR-26 12EM TITLE CRYSTAL STRUCTURE OF A B1,3-GLUCOSYLTRANSFERASE (B3GLCT) REVEALS AN TITLE 2 UNUSUAL MODE OF SUBSTRATE RECOGNITION BY A TWO-DOMAIN GT-A FOLD TITLE 3 GLYCOSYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-1,3-GLUCOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA3GLC-T,BETA 3-GLUCOSYLTRANSFERASE,BETA-3- COMPND 5 GLYCOSYLTRANSFERASE-LIKE; COMPND 6 EC: 2.4.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: GLYCOSYLTRANSFERASE; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: THROMBOSPONDIN-1; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: GLYCOPROTEIN G; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: B3GLCT, B3GALTL, B3GTL; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293-F CELLS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: THBS1, TSP, TSP1; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS O-FUCOSYLATION, GLYCOSYLTRANSFERASE, PETERS PLUS SYNDROME, KEYWDS 2 THROMBOSPONDIN TYPE 1 REPEATS, CARBOHYDRATE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.BERARDINELLI,R.KADIRVELRAJ,Z.A.WOOD REVDAT 1 26-AUG-26 12EM 0 JRNL AUTH S.J.BERARDINELLI,R.KADIRVELRAJ,K.B.LUTHER,Z.GAO,D.CHAPLA, JRNL AUTH 2 C.HUANG,D.M.TEHRANI,A.ZHANG,K.W.MOREMEN,Z.A.WOOD, JRNL AUTH 3 R.S.HALTIWANGER JRNL TITL CRYSTAL STRUCTURE OF A BETA 1,3-GLUCOSYLTRANSFERASE REVEALS JRNL TITL 2 AN UNUSUAL SUBSTRATE RECOGNITION BY A TWO-DOMAIN GT-A FOLD JRNL TITL 3 GLYCOSYLTRANSFERASE. JRNL REF J.BIOL.CHEM. 13418 2026 JRNL REFN ESSN 1083-351X JRNL PMID 42575440 JRNL DOI 10.1016/J.JBC.2026.113418 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21_5207: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2243 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.9800 - 5.2200 1.00 2909 152 0.2024 0.2279 REMARK 3 2 5.2100 - 4.1400 1.00 2749 145 0.1584 0.1605 REMARK 3 3 4.1400 - 3.6200 1.00 2687 141 0.1826 0.1942 REMARK 3 4 3.6200 - 3.2900 1.00 2690 142 0.1959 0.2295 REMARK 3 5 3.2900 - 3.0500 1.00 2662 140 0.2273 0.3039 REMARK 3 6 3.0500 - 2.8700 1.00 2659 140 0.2147 0.2637 REMARK 3 7 2.8700 - 2.7300 1.00 2652 140 0.2058 0.2432 REMARK 3 8 2.7300 - 2.6100 1.00 2644 140 0.1986 0.2577 REMARK 3 9 2.6100 - 2.5100 1.00 2634 138 0.2117 0.2419 REMARK 3 10 2.5100 - 2.4200 1.00 2642 139 0.2397 0.2951 REMARK 3 11 2.4200 - 2.3500 1.00 2595 136 0.2391 0.3107 REMARK 3 12 2.3500 - 2.2800 1.00 2640 139 0.2320 0.2589 REMARK 3 13 2.2800 - 2.2200 1.00 2637 139 0.2491 0.2707 REMARK 3 14 2.2200 - 2.1600 1.00 2605 138 0.2545 0.2813 REMARK 3 15 2.1600 - 2.1200 1.00 2610 137 0.2997 0.3417 REMARK 3 16 2.1100 - 2.0700 1.00 2604 137 0.3166 0.3654 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4074 REMARK 3 ANGLE : 1.091 5537 REMARK 3 CHIRALITY : 0.060 603 REMARK 3 PLANARITY : 0.010 698 REMARK 3 DIHEDRAL : 14.527 1496 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8700 36.7598 -19.3757 REMARK 3 T TENSOR REMARK 3 T11: 0.5208 T22: 0.5266 REMARK 3 T33: 0.5438 T12: 0.0360 REMARK 3 T13: -0.1015 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.1612 L22: 2.5576 REMARK 3 L33: 3.2404 L12: -0.7352 REMARK 3 L13: 0.5065 L23: 0.4230 REMARK 3 S TENSOR REMARK 3 S11: 0.1590 S12: 0.0996 S13: -0.1602 REMARK 3 S21: -0.0969 S22: 0.0112 S23: 0.0655 REMARK 3 S31: 0.5451 S32: 0.3691 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 480 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4517 48.3272 0.9906 REMARK 3 T TENSOR REMARK 3 T11: 0.5048 T22: 0.5964 REMARK 3 T33: 0.5987 T12: -0.0199 REMARK 3 T13: -0.0451 T23: 0.0525 REMARK 3 L TENSOR REMARK 3 L11: 1.1284 L22: 1.4550 REMARK 3 L33: 4.7189 L12: -0.3405 REMARK 3 L13: 0.1812 L23: 0.6194 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: -0.3132 S13: 0.0648 REMARK 3 S21: 0.2898 S22: 0.0748 S23: 0.0142 REMARK 3 S31: 0.1489 S32: -0.3714 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3937 81.5931 -34.3914 REMARK 3 T TENSOR REMARK 3 T11: 0.9478 T22: 1.0064 REMARK 3 T33: 0.6547 T12: 0.2942 REMARK 3 T13: 0.0241 T23: 0.1083 REMARK 3 L TENSOR REMARK 3 L11: 0.0409 L22: 0.0138 REMARK 3 L33: 0.0248 L12: -0.0230 REMARK 3 L13: 0.0303 L23: -0.0153 REMARK 3 S TENSOR REMARK 3 S11: -0.2995 S12: 0.0197 S13: 0.1074 REMARK 3 S21: -0.2238 S22: -0.1543 S23: 0.1171 REMARK 3 S31: -0.1673 S32: -0.3111 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9595 69.9583 -15.0731 REMARK 3 T TENSOR REMARK 3 T11: 0.6466 T22: 0.5983 REMARK 3 T33: 0.7108 T12: 0.0204 REMARK 3 T13: -0.0086 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.2493 L22: 0.4289 REMARK 3 L33: 0.1799 L12: 0.2378 REMARK 3 L13: -0.1878 L23: -0.0894 REMARK 3 S TENSOR REMARK 3 S11: 0.0841 S12: 0.1052 S13: -0.2996 REMARK 3 S21: 0.0852 S22: 0.1531 S23: 0.0420 REMARK 3 S31: -0.2300 S32: -0.1614 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2235 76.9117 -34.7103 REMARK 3 T TENSOR REMARK 3 T11: 0.5847 T22: 1.1370 REMARK 3 T33: 0.7607 T12: -0.0966 REMARK 3 T13: 0.0227 T23: -0.1456 REMARK 3 L TENSOR REMARK 3 L11: 0.0856 L22: 0.0085 REMARK 3 L33: 0.0122 L12: -0.0256 REMARK 3 L13: 0.0037 L23: -0.0045 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: -0.0472 S13: -0.0272 REMARK 3 S21: 0.1301 S22: -0.0021 S23: 0.6748 REMARK 3 S31: 0.0645 S32: -0.4814 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 12EM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-26. REMARK 100 THE DEPOSITION ID IS D_1000306464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) ROSENBAUM-ROCK DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45560 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 57.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 18.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 34% PEG 3350, 0.2 M DIBASIC AMMONIUM REMARK 280 PHOSPHATE AND 0.5 M BETAINE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.90500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.90500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.90500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 68.90500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 68.90500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 68.90500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 104 REMARK 465 ARG A 337 REMARK 465 SER A 338 REMARK 465 GLN A 339 REMARK 465 ASP A 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 110 -53.43 78.44 REMARK 500 ASN A 177 64.88 -152.82 REMARK 500 THR A 242 -103.64 -113.85 REMARK 500 PHE A 253 117.37 -163.26 REMARK 500 ARG A 261 -64.60 75.22 REMARK 500 THR A 290 -90.32 -118.13 REMARK 500 ALA A 444 -166.68 -127.48 REMARK 500 LYS A 464 139.25 97.50 REMARK 500 ASN B 39 25.33 -148.06 REMARK 500 ASN B 40 52.33 -141.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 349 OD2 REMARK 620 2 ASP A 351 OD1 104.2 REMARK 620 3 HIS A 463 NE2 105.1 84.1 REMARK 620 4 UDP A 502 O1A 103.4 92.4 151.3 REMARK 620 5 UDP A 502 O3B 94.9 159.9 97.1 76.9 REMARK 620 N 1 2 3 4 DBREF 12EM A 48 480 UNP Q6Y288 B3GLT_HUMAN 48 480 DBREF 12EM B 9 67 UNP P07996 TSP1_HUMAN 490 548 SEQADV 12EM ASP B 8 UNP P07996 EXPRESSION TAG SEQADV 12EM LEU B 68 UNP P07996 EXPRESSION TAG SEQRES 1 A 433 SER ARG LYS ASN ASP ILE ASP LEU LYS GLY ILE VAL PHE SEQRES 2 A 433 VAL ILE GLN SER GLN SER ASN SER PHE HIS ALA LYS ARG SEQRES 3 A 433 ALA GLU GLN LEU LYS LYS SER ILE LEU LYS GLN ALA ALA SEQRES 4 A 433 ASP LEU THR GLN GLU LEU PRO SER VAL LEU LEU LEU HIS SEQRES 5 A 433 GLN LEU ALA LYS GLN GLU GLY ALA TRP THR ILE LEU PRO SEQRES 6 A 433 LEU LEU PRO HIS PHE SER VAL THR TYR SER ARG ASN SER SEQRES 7 A 433 SER TRP ILE PHE PHE CYS GLU GLU GLU THR ARG ILE GLN SEQRES 8 A 433 ILE PRO LYS LEU LEU GLU THR LEU ARG ARG TYR ASP PRO SEQRES 9 A 433 SER LYS GLU TRP PHE LEU GLY LYS ALA LEU HIS ASP GLU SEQRES 10 A 433 GLU ALA THR ILE ILE HIS HIS TYR ALA PHE SER GLU ASN SEQRES 11 A 433 PRO THR VAL PHE LYS TYR PRO ASP PHE ALA ALA GLY TRP SEQRES 12 A 433 ALA LEU SER ILE PRO LEU VAL ASN LYS LEU THR LYS ARG SEQRES 13 A 433 LEU LYS SER GLU SER LEU LYS SER ASP PHE THR ILE ASP SEQRES 14 A 433 LEU LYS HIS GLU ILE ALA LEU TYR ILE TRP ASP LYS GLY SEQRES 15 A 433 GLY GLY PRO PRO LEU THR PRO VAL PRO GLU PHE CYS THR SEQRES 16 A 433 ASN ASP VAL ASP PHE TYR CYS ALA THR THR PHE HIS SER SEQRES 17 A 433 PHE LEU PRO LEU CYS ARG LYS PRO VAL LYS LYS LYS ASP SEQRES 18 A 433 ILE PHE VAL ALA VAL LYS THR CYS LYS LYS PHE HIS GLY SEQRES 19 A 433 ASP ARG ILE PRO ILE VAL LYS GLN THR TRP GLU SER GLN SEQRES 20 A 433 ALA SER LEU ILE GLU TYR TYR SER ASP TYR THR GLU ASN SEQRES 21 A 433 SER ILE PRO THR VAL ASP LEU GLY ILE PRO ASN THR ASP SEQRES 22 A 433 ARG GLY HIS CYS GLY LYS THR PHE ALA ILE LEU GLU ARG SEQRES 23 A 433 PHE LEU ASN ARG SER GLN ASP LYS THR ALA TRP LEU VAL SEQRES 24 A 433 ILE VAL ASP ASP ASP THR LEU ILE SER ILE SER ARG LEU SEQRES 25 A 433 GLN HIS LEU LEU SER CYS TYR ASP SER GLY GLU PRO VAL SEQRES 26 A 433 PHE LEU GLY GLU ARG TYR GLY TYR GLY LEU GLY THR GLY SEQRES 27 A 433 GLY TYR SER TYR ILE THR GLY GLY GLY GLY MET VAL PHE SEQRES 28 A 433 SER ARG GLU ALA VAL ARG ARG LEU LEU ALA SER LYS CYS SEQRES 29 A 433 ARG CYS TYR SER ASN ASP ALA PRO ASP ASP MET VAL LEU SEQRES 30 A 433 GLY MET CYS PHE SER GLY LEU GLY ILE PRO VAL THR HIS SEQRES 31 A 433 SER PRO LEU PHE HIS GLN ALA ARG PRO VAL ASP TYR PRO SEQRES 32 A 433 LYS ASP TYR LEU SER HIS GLN VAL PRO ILE SER PHE HIS SEQRES 33 A 433 LYS HIS TRP ASN ILE ASP PRO VAL LYS VAL TYR PHE THR SEQRES 34 A 433 TRP LEU ALA PRO SEQRES 1 B 61 ASP PRO ILE ASN GLY GLY TRP GLY PRO TRP SER PRO TRP SEQRES 2 B 61 ASP ILE CYS SER VAL THR CYS GLY GLY GLY VAL GLN LYS SEQRES 3 B 61 ARG SER ARG LEU CYS ASN ASN PRO THR PRO GLN PHE GLY SEQRES 4 B 61 GLY LYS ASP CYS VAL GLY ASP VAL THR GLU ASN GLN ILE SEQRES 5 B 61 CYS ASN LYS GLN ASP CYS PRO ILE LEU HET MN A 501 1 HET UDP A 502 34 HET NAG A 503 27 HET GOL A 504 14 HET EDO A 505 10 HET FUC B 100 20 HETNAM MN MANGANESE (II) ION HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 MN MN 2+ FORMUL 4 UDP C9 H14 N2 O12 P2 FORMUL 5 NAG C8 H15 N O6 FORMUL 6 GOL C3 H8 O3 FORMUL 7 EDO C2 H6 O2 FORMUL 8 FUC C6 H12 O5 FORMUL 9 HOH *112(H2 O) HELIX 1 AA1 ASP A 54 LYS A 56 5 3 HELIX 2 AA2 ASN A 67 THR A 89 1 23 HELIX 3 AA3 LEU A 98 ALA A 102 1 5 HELIX 4 AA4 GLY A 106 PRO A 112 5 7 HELIX 5 AA5 LEU A 113 SER A 122 1 10 HELIX 6 AA6 GLN A 138 ARG A 147 1 10 HELIX 7 AA7 THR A 167 HIS A 171 5 5 HELIX 8 AA8 ASN A 177 PHE A 181 5 5 HELIX 9 AA9 PHE A 186 GLY A 189 5 4 HELIX 10 AB1 ILE A 194 LYS A 205 1 12 HELIX 11 AB2 ASP A 216 ASP A 227 1 12 HELIX 12 AB3 LYS A 228 GLY A 230 5 3 HELIX 13 AB4 LYS A 265 LYS A 267 5 3 HELIX 14 AB5 CYS A 276 GLY A 281 1 6 HELIX 15 AB6 ASP A 282 THR A 290 1 9 HELIX 16 AB7 TRP A 291 ALA A 295 5 5 HELIX 17 AB8 HIS A 323 ASN A 336 1 14 HELIX 18 AB9 SER A 355 SER A 364 1 10 HELIX 19 AC1 ARG A 400 SER A 409 1 10 HELIX 20 AC2 PRO A 419 GLY A 432 1 14 HELIX 21 AC3 ARG A 445 TYR A 449 5 5 HELIX 22 AC4 PRO A 450 SER A 455 1 6 HELIX 23 AC5 ASP A 469 LEU A 478 1 10 SHEET 1 AA1 6 VAL A 95 LEU A 97 0 SHEET 2 AA1 6 ILE A 58 GLN A 63 1 N ILE A 62 O LEU A 96 SHEET 3 AA1 6 TRP A 127 GLU A 132 1 O PHE A 129 N VAL A 59 SHEET 4 AA1 6 TRP A 190 SER A 193 -1 O TRP A 190 N PHE A 130 SHEET 5 AA1 6 PHE A 156 GLY A 158 -1 N LEU A 157 O ALA A 191 SHEET 6 AA1 6 THR A 235 PRO A 236 1 O THR A 235 N PHE A 156 SHEET 1 AA2 2 THR A 135 ILE A 137 0 SHEET 2 AA2 2 THR A 251 PHE A 253 -1 O THR A 252 N ARG A 136 SHEET 1 AA3 2 ALA A 160 LEU A 161 0 SHEET 2 AA3 2 TYR A 183 PRO A 184 -1 O TYR A 183 N LEU A 161 SHEET 1 AA4 3 PHE A 213 THR A 214 0 SHEET 2 AA4 3 ARG A 377 TYR A 380 -1 O GLY A 379 N THR A 214 SHEET 3 AA4 3 TYR A 387 ILE A 390 -1 O TYR A 389 N TYR A 378 SHEET 1 AA5 7 THR A 311 ASP A 313 0 SHEET 2 AA5 7 LEU A 297 SER A 302 1 N SER A 302 O VAL A 312 SHEET 3 AA5 7 ILE A 269 LYS A 274 1 N VAL A 273 O TYR A 301 SHEET 4 AA5 7 TRP A 344 ASP A 349 1 O VAL A 346 N ALA A 272 SHEET 5 AA5 7 MET A 396 SER A 399 -1 O PHE A 398 N LEU A 345 SHEET 6 AA5 7 PHE A 373 GLY A 375 -1 N LEU A 374 O VAL A 397 SHEET 7 AA5 7 THR A 436 HIS A 437 1 O THR A 436 N PHE A 373 SHEET 1 AA6 2 THR A 352 ILE A 354 0 SHEET 2 AA6 2 SER A 461 HIS A 463 -1 O PHE A 462 N LEU A 353 SHEET 1 AA7 2 GLY B 30 SER B 35 0 SHEET 2 AA7 2 THR B 55 CYS B 60 -1 O CYS B 60 N GLY B 30 SSBOND 1 CYS A 241 CYS A 249 1555 1555 2.06 SSBOND 2 CYS A 260 CYS A 365 1555 1555 2.07 SSBOND 3 CYS A 324 CYS A 413 1555 1555 2.01 SSBOND 4 CYS A 411 CYS A 427 1555 1555 2.04 SSBOND 5 CYS B 23 CYS B 60 1555 1555 2.08 SSBOND 6 CYS B 27 CYS B 65 1555 1555 2.05 SSBOND 7 CYS B 38 CYS B 50 1555 1555 2.06 LINK ND2 ASN A 124 C1 NAG A 503 1555 1555 1.47 LINK OG1 THR B 26 C1 FUC B 100 1555 1555 1.49 LINK OD2 ASP A 349 MN MN A 501 1555 1555 2.16 LINK OD1 ASP A 351 MN MN A 501 1555 1555 2.17 LINK NE2 HIS A 463 MN MN A 501 1555 1555 2.11 LINK MN MN A 501 O1A UDP A 502 1555 1555 2.26 LINK MN MN A 501 O3B UDP A 502 1555 1555 2.05 CISPEP 1 ILE A 309 PRO A 310 0 -5.54 CISPEP 2 ASN B 40 PRO B 41 0 3.90 CRYST1 133.910 133.910 137.810 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007468 0.004311 0.000000 0.00000 SCALE2 0.000000 0.008623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007256 0.00000 CONECT 1243 7776 CONECT 3151 3270 CONECT 3270 3151 CONECT 3438 5086 CONECT 4478 5793 CONECT 4833 7741 CONECT 4856 7741 CONECT 5086 3438 CONECT 5759 5985 CONECT 5793 4478 CONECT 5985 5759 CONECT 6551 7741 CONECT 7087 7607 CONECT 7124 7827 CONECT 7138 7682 CONECT 7302 7467 CONECT 7467 7302 CONECT 7607 7087 CONECT 7682 7138 CONECT 7741 4833 4856 6551 7760 CONECT 7741 7766 CONECT 7742 7743 7747 7750 CONECT 7743 7742 7744 7748 CONECT 7744 7743 7745 CONECT 7745 7744 7746 7749 CONECT 7746 7745 7747 7767 CONECT 7747 7742 7746 CONECT 7748 7743 CONECT 7749 7745 CONECT 7750 7742 7751 7755 7768 CONECT 7751 7750 7752 7753 7769 CONECT 7752 7751 7770 CONECT 7753 7751 7754 7756 7771 CONECT 7754 7753 7755 7757 7772 CONECT 7755 7750 7754 CONECT 7756 7753 7773 CONECT 7757 7754 7758 7774 7775 CONECT 7758 7757 7759 CONECT 7759 7758 7760 7761 7762 CONECT 7760 7741 7759 CONECT 7761 7759 CONECT 7762 7759 7763 CONECT 7763 7762 7764 7765 7766 CONECT 7764 7763 CONECT 7765 7763 CONECT 7766 7741 7763 CONECT 7767 7746 CONECT 7768 7750 CONECT 7769 7751 CONECT 7770 7752 CONECT 7771 7753 CONECT 7772 7754 CONECT 7773 7756 CONECT 7774 7757 CONECT 7775 7757 CONECT 7776 1243 7777 7787 CONECT 7777 7776 7778 7784 7790 CONECT 7778 7777 7779 7785 7791 CONECT 7779 7778 7780 7786 7792 CONECT 7780 7779 7781 7787 7793 CONECT 7781 7780 7788 7794 7795 CONECT 7782 7783 7784 7789 CONECT 7783 7782 7796 7797 7798 CONECT 7784 7777 7782 7799 CONECT 7785 7778 7800 CONECT 7786 7779 7801 CONECT 7787 7776 7780 CONECT 7788 7781 7802 CONECT 7789 7782 CONECT 7790 7777 CONECT 7791 7778 CONECT 7792 7779 CONECT 7793 7780 CONECT 7794 7781 CONECT 7795 7781 CONECT 7796 7783 CONECT 7797 7783 CONECT 7798 7783 CONECT 7799 7784 CONECT 7800 7785 CONECT 7801 7786 CONECT 7802 7788 CONECT 7803 7804 7805 7809 7810 CONECT 7804 7803 7811 CONECT 7805 7803 7806 7807 7812 CONECT 7806 7805 7813 CONECT 7807 7805 7808 7814 7815 CONECT 7808 7807 7816 CONECT 7809 7803 CONECT 7810 7803 CONECT 7811 7804 CONECT 7812 7805 CONECT 7813 7806 CONECT 7814 7807 CONECT 7815 7807 CONECT 7816 7808 CONECT 7817 7818 7819 7821 7822 CONECT 7818 7817 7823 CONECT 7819 7817 7820 7824 7825 CONECT 7820 7819 7826 CONECT 7821 7817 CONECT 7822 7817 CONECT 7823 7818 CONECT 7824 7819 CONECT 7825 7819 CONECT 7826 7820 CONECT 7827 7124 7828 7836 CONECT 7828 7827 7829 7833 7837 CONECT 7829 7828 7830 7834 7838 CONECT 7830 7829 7831 7835 7839 CONECT 7831 7830 7832 7836 7840 CONECT 7832 7831 7841 7842 7843 CONECT 7833 7828 7844 CONECT 7834 7829 7845 CONECT 7835 7830 7846 CONECT 7836 7827 7831 CONECT 7837 7828 CONECT 7838 7829 CONECT 7839 7830 CONECT 7840 7831 CONECT 7841 7832 CONECT 7842 7832 CONECT 7843 7832 CONECT 7844 7833 CONECT 7845 7834 CONECT 7846 7835 MASTER 369 0 6 23 24 0 0 6 4071 2 126 39 END