data_12KM # _entry.id 12KM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 12KM pdb_000012km 10.2210/pdb12km/pdb WWPDB D_1000306322 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-10-14 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 12KM _pdbx_database_status.recvd_initial_deposition_date 2026-04-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 3 _pdbx_contact_author.email acr753@mail.usask.ca _pdbx_contact_author.name_first Antonio _pdbx_contact_author.name_last Ruzzini _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5697-5371 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Dhindwal, P.' 1 0000-0003-4409-4160 'Boniecki, T.M.' 2 0000-0002-0854-0891 'Ruzzini, A.' 3 0000-0002-5697-5371 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first e2822225 _citation.page_last e2822225 _citation.title 'Supramolecular Assembly of an Antimicrobial Peptide Into a Pore.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.2822225 _citation.pdbx_database_id_PubMed 42815953 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Deeyagahage, K.' 1 0000-0003-4599-5446 primary 'Dhindwal, P.' 2 0000-0003-4409-4160 primary 'Boniecki, M.T.' 3 0000-0002-0854-0891 primary 'Ruzzini, A.' 4 0000-0002-5697-5371 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn AMP 1906.334 8 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 3 water nat water 18.015 133 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'TV(AIB)GLVKWILDTVKKFA' _entity_poly.pdbx_seq_one_letter_code_can TVAGLVKWILDTVKKFA _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 VAL n 1 3 AIB n 1 4 GLY n 1 5 LEU n 1 6 VAL n 1 7 LYS n 1 8 TRP n 1 9 ILE n 1 10 LEU n 1 11 ASP n 1 12 THR n 1 13 VAL n 1 14 LYS n 1 15 LYS n 1 16 PHE n 1 17 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 17 _pdbx_entity_src_syn.organism_scientific 'Staphylococcus auricularis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 29379 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AIB 'L-peptide linking' n 'ALPHA-AMINOISOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 AIB 3 3 3 AIB AIB A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 PHE 16 16 16 PHE PHE A . n A 1 17 ALA 17 17 17 ALA ALA A . n B 1 1 THR 1 1 1 THR THR B . n B 1 2 VAL 2 2 2 VAL VAL B . n B 1 3 AIB 3 3 3 AIB AIB B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 VAL 6 6 6 VAL VAL B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 TRP 8 8 8 TRP TRP B . n B 1 9 ILE 9 9 9 ILE ILE B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 ASP 11 11 11 ASP ASP B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 VAL 13 13 13 VAL VAL B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 LYS 15 15 15 LYS LYS B . n B 1 16 PHE 16 16 16 PHE PHE B . n B 1 17 ALA 17 17 17 ALA ALA B . n C 1 1 THR 1 1 1 THR THR C . n C 1 2 VAL 2 2 2 VAL VAL C . n C 1 3 AIB 3 3 3 AIB AIB C . n C 1 4 GLY 4 4 4 GLY GLY C . n C 1 5 LEU 5 5 5 LEU LEU C . n C 1 6 VAL 6 6 6 VAL VAL C . n C 1 7 LYS 7 7 7 LYS LYS C . n C 1 8 TRP 8 8 8 TRP TRP C . n C 1 9 ILE 9 9 9 ILE ILE C . n C 1 10 LEU 10 10 10 LEU LEU C . n C 1 11 ASP 11 11 11 ASP ASP C . n C 1 12 THR 12 12 12 THR THR C . n C 1 13 VAL 13 13 13 VAL VAL C . n C 1 14 LYS 14 14 14 LYS LYS C . n C 1 15 LYS 15 15 15 LYS LYS C . n C 1 16 PHE 16 16 16 PHE PHE C . n C 1 17 ALA 17 17 17 ALA ALA C . n D 1 1 THR 1 1 1 THR THR D . n D 1 2 VAL 2 2 2 VAL VAL D . n D 1 3 AIB 3 3 3 AIB AIB D . n D 1 4 GLY 4 4 4 GLY GLY D . n D 1 5 LEU 5 5 5 LEU LEU D . n D 1 6 VAL 6 6 6 VAL VAL D . n D 1 7 LYS 7 7 7 LYS LYS D . n D 1 8 TRP 8 8 8 TRP TRP D . n D 1 9 ILE 9 9 9 ILE ILE D . n D 1 10 LEU 10 10 10 LEU LEU D . n D 1 11 ASP 11 11 11 ASP ASP D . n D 1 12 THR 12 12 12 THR THR D . n D 1 13 VAL 13 13 13 VAL VAL D . n D 1 14 LYS 14 14 14 LYS LYS D . n D 1 15 LYS 15 15 15 LYS LYS D . n D 1 16 PHE 16 16 16 PHE PHE D . n D 1 17 ALA 17 17 17 ALA ALA D . n E 1 1 THR 1 1 1 THR THR E . n E 1 2 VAL 2 2 2 VAL VAL E . n E 1 3 AIB 3 3 3 AIB AIB E . n E 1 4 GLY 4 4 4 GLY GLY E . n E 1 5 LEU 5 5 5 LEU LEU E . n E 1 6 VAL 6 6 6 VAL VAL E . n E 1 7 LYS 7 7 7 LYS LYS E . n E 1 8 TRP 8 8 8 TRP TRP E . n E 1 9 ILE 9 9 9 ILE ILE E . n E 1 10 LEU 10 10 10 LEU LEU E . n E 1 11 ASP 11 11 11 ASP ASP E . n E 1 12 THR 12 12 12 THR THR E . n E 1 13 VAL 13 13 13 VAL VAL E . n E 1 14 LYS 14 14 14 LYS LYS E . n E 1 15 LYS 15 15 15 LYS LYS E . n E 1 16 PHE 16 16 16 PHE PHE E . n E 1 17 ALA 17 17 17 ALA ALA E . n F 1 1 THR 1 1 1 THR THR F . n F 1 2 VAL 2 2 2 VAL VAL F . n F 1 3 AIB 3 3 3 AIB AIB F . n F 1 4 GLY 4 4 4 GLY GLY F . n F 1 5 LEU 5 5 5 LEU LEU F . n F 1 6 VAL 6 6 6 VAL VAL F . n F 1 7 LYS 7 7 7 LYS LYS F . n F 1 8 TRP 8 8 8 TRP TRP F . n F 1 9 ILE 9 9 9 ILE ILE F . n F 1 10 LEU 10 10 10 LEU LEU F . n F 1 11 ASP 11 11 11 ASP ASP F . n F 1 12 THR 12 12 12 THR THR F . n F 1 13 VAL 13 13 13 VAL VAL F . n F 1 14 LYS 14 14 14 LYS LYS F . n F 1 15 LYS 15 15 15 LYS LYS F . n F 1 16 PHE 16 16 16 PHE PHE F . n F 1 17 ALA 17 17 17 ALA ALA F . n G 1 1 THR 1 1 1 THR THR G . n G 1 2 VAL 2 2 2 VAL VAL G . n G 1 3 AIB 3 3 3 AIB AIB G . n G 1 4 GLY 4 4 4 GLY GLY G . n G 1 5 LEU 5 5 5 LEU LEU G . n G 1 6 VAL 6 6 6 VAL VAL G . n G 1 7 LYS 7 7 7 LYS LYS G . n G 1 8 TRP 8 8 8 TRP TRP G . n G 1 9 ILE 9 9 9 ILE ILE G . n G 1 10 LEU 10 10 10 LEU LEU G . n G 1 11 ASP 11 11 11 ASP ASP G . n G 1 12 THR 12 12 12 THR THR G . n G 1 13 VAL 13 13 13 VAL VAL G . n G 1 14 LYS 14 14 14 LYS LYS G . n G 1 15 LYS 15 15 15 LYS LYS G . n G 1 16 PHE 16 16 16 PHE PHE G . n G 1 17 ALA 17 17 17 ALA ALA G . n H 1 1 THR 1 1 1 THR THR H . n H 1 2 VAL 2 2 2 VAL VAL H . n H 1 3 AIB 3 3 3 AIB AIB H . n H 1 4 GLY 4 4 4 GLY GLY H . n H 1 5 LEU 5 5 5 LEU LEU H . n H 1 6 VAL 6 6 6 VAL VAL H . n H 1 7 LYS 7 7 7 LYS LYS H . n H 1 8 TRP 8 8 8 TRP TRP H . n H 1 9 ILE 9 9 9 ILE ILE H . n H 1 10 LEU 10 10 10 LEU LEU H . n H 1 11 ASP 11 11 11 ASP ASP H . n H 1 12 THR 12 12 12 THR THR H . n H 1 13 VAL 13 13 13 VAL VAL H . n H 1 14 LYS 14 14 14 LYS LYS H . n H 1 15 LYS 15 15 15 LYS LYS H . n H 1 16 PHE 16 16 16 PHE PHE H . n H 1 17 ALA 17 17 17 ALA ALA H . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id AIB _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id AIB _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 EDO 1 101 101 EDO EDO B . J 2 EDO 1 102 102 EDO EDO B . K 2 EDO 1 101 101 EDO EDO H . L 3 HOH 1 101 101 HOH HOH A . L 3 HOH 2 102 105 HOH HOH A . L 3 HOH 3 103 102 HOH HOH A . L 3 HOH 4 104 103 HOH HOH A . L 3 HOH 5 105 104 HOH HOH A . L 3 HOH 6 106 107 HOH HOH A . L 3 HOH 7 107 106 HOH HOH A . L 3 HOH 8 108 111 HOH HOH A . L 3 HOH 9 109 108 HOH HOH A . L 3 HOH 10 110 109 HOH HOH A . L 3 HOH 11 111 112 HOH HOH A . L 3 HOH 12 112 110 HOH HOH A . L 3 HOH 13 113 113 HOH HOH A . L 3 HOH 14 114 114 HOH HOH A . L 3 HOH 15 115 115 HOH HOH A . M 3 HOH 1 201 202 HOH HOH B . M 3 HOH 2 202 203 HOH HOH B . M 3 HOH 3 203 201 HOH HOH B . M 3 HOH 4 204 204 HOH HOH B . M 3 HOH 5 205 205 HOH HOH B . M 3 HOH 6 206 206 HOH HOH B . M 3 HOH 7 207 207 HOH HOH B . M 3 HOH 8 208 208 HOH HOH B . M 3 HOH 9 209 209 HOH HOH B . M 3 HOH 10 210 210 HOH HOH B . M 3 HOH 11 211 211 HOH HOH B . M 3 HOH 12 212 212 HOH HOH B . M 3 HOH 13 213 213 HOH HOH B . M 3 HOH 14 214 214 HOH HOH B . N 3 HOH 1 101 101 HOH HOH C . N 3 HOH 2 102 102 HOH HOH C . N 3 HOH 3 103 105 HOH HOH C . N 3 HOH 4 104 106 HOH HOH C . N 3 HOH 5 105 103 HOH HOH C . N 3 HOH 6 106 104 HOH HOH C . N 3 HOH 7 107 107 HOH HOH C . N 3 HOH 8 108 109 HOH HOH C . N 3 HOH 9 109 108 HOH HOH C . N 3 HOH 10 110 110 HOH HOH C . N 3 HOH 11 111 111 HOH HOH C . N 3 HOH 12 112 112 HOH HOH C . N 3 HOH 13 113 113 HOH HOH C . N 3 HOH 14 114 114 HOH HOH C . O 3 HOH 1 201 201 HOH HOH D . O 3 HOH 2 202 202 HOH HOH D . O 3 HOH 3 203 205 HOH HOH D . O 3 HOH 4 204 206 HOH HOH D . O 3 HOH 5 205 203 HOH HOH D . O 3 HOH 6 206 208 HOH HOH D . O 3 HOH 7 207 204 HOH HOH D . O 3 HOH 8 208 207 HOH HOH D . O 3 HOH 9 209 209 HOH HOH D . O 3 HOH 10 210 210 HOH HOH D . O 3 HOH 11 211 211 HOH HOH D . O 3 HOH 12 212 212 HOH HOH D . O 3 HOH 13 213 213 HOH HOH D . P 3 HOH 1 101 104 HOH HOH E . P 3 HOH 2 102 105 HOH HOH E . P 3 HOH 3 103 102 HOH HOH E . P 3 HOH 4 104 101 HOH HOH E . P 3 HOH 5 105 103 HOH HOH E . P 3 HOH 6 106 107 HOH HOH E . P 3 HOH 7 107 106 HOH HOH E . P 3 HOH 8 108 110 HOH HOH E . P 3 HOH 9 109 109 HOH HOH E . P 3 HOH 10 110 108 HOH HOH E . P 3 HOH 11 111 111 HOH HOH E . P 3 HOH 12 112 113 HOH HOH E . P 3 HOH 13 113 112 HOH HOH E . P 3 HOH 14 114 114 HOH HOH E . P 3 HOH 15 115 115 HOH HOH E . P 3 HOH 16 116 117 HOH HOH E . P 3 HOH 17 117 116 HOH HOH E . P 3 HOH 18 118 119 HOH HOH E . Q 3 HOH 1 101 102 HOH HOH F . Q 3 HOH 2 102 104 HOH HOH F . Q 3 HOH 3 103 103 HOH HOH F . Q 3 HOH 4 104 107 HOH HOH F . Q 3 HOH 5 105 105 HOH HOH F . Q 3 HOH 6 106 106 HOH HOH F . Q 3 HOH 7 107 109 HOH HOH F . Q 3 HOH 8 108 108 HOH HOH F . Q 3 HOH 9 109 110 HOH HOH F . Q 3 HOH 10 110 111 HOH HOH F . Q 3 HOH 11 111 112 HOH HOH F . Q 3 HOH 12 112 113 HOH HOH F . R 3 HOH 1 101 101 HOH HOH G . R 3 HOH 2 102 106 HOH HOH G . R 3 HOH 3 103 104 HOH HOH G . R 3 HOH 4 104 103 HOH HOH G . R 3 HOH 5 105 105 HOH HOH G . R 3 HOH 6 106 107 HOH HOH G . R 3 HOH 7 107 108 HOH HOH G . R 3 HOH 8 108 102 HOH HOH G . R 3 HOH 9 109 110 HOH HOH G . R 3 HOH 10 110 109 HOH HOH G . R 3 HOH 11 111 112 HOH HOH G . R 3 HOH 12 112 113 HOH HOH G . R 3 HOH 13 113 111 HOH HOH G . R 3 HOH 14 114 114 HOH HOH G . R 3 HOH 15 115 115 HOH HOH G . R 3 HOH 16 116 116 HOH HOH G . R 3 HOH 17 117 117 HOH HOH G . R 3 HOH 18 118 118 HOH HOH G . R 3 HOH 19 119 119 HOH HOH G . R 3 HOH 20 120 120 HOH HOH G . S 3 HOH 1 201 101 HOH HOH H . S 3 HOH 2 202 202 HOH HOH H . S 3 HOH 3 203 201 HOH HOH H . S 3 HOH 4 204 204 HOH HOH H . S 3 HOH 5 205 203 HOH HOH H . S 3 HOH 6 206 205 HOH HOH H . S 3 HOH 7 207 207 HOH HOH H . S 3 HOH 8 208 209 HOH HOH H . S 3 HOH 9 209 206 HOH HOH H . S 3 HOH 10 210 210 HOH HOH H . S 3 HOH 11 211 208 HOH HOH H . S 3 HOH 12 212 211 HOH HOH H . S 3 HOH 13 213 212 HOH HOH H . S 3 HOH 14 214 214 HOH HOH H . S 3 HOH 15 215 213 HOH HOH H . S 3 HOH 16 216 215 HOH HOH H . S 3 HOH 17 217 216 HOH HOH H . S 3 HOH 18 218 118 HOH HOH H . S 3 HOH 19 219 217 HOH HOH H . S 3 HOH 20 220 219 HOH HOH H . S 3 HOH 21 221 218 HOH HOH H . S 3 HOH 22 222 222 HOH HOH H . S 3 HOH 23 223 220 HOH HOH H . S 3 HOH 24 224 221 HOH HOH H . S 3 HOH 25 225 224 HOH HOH H . S 3 HOH 26 226 223 HOH HOH H . S 3 HOH 27 227 225 HOH HOH H . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B LYS 14 ? CD ? B LYS 14 CD 2 1 Y 1 B LYS 14 ? CE ? B LYS 14 CE 3 1 Y 1 B LYS 14 ? NZ ? B LYS 14 NZ 4 1 Y 1 C LYS 14 ? CE ? C LYS 14 CE 5 1 Y 1 C LYS 14 ? NZ ? C LYS 14 NZ 6 1 Y 1 C LYS 15 ? CG ? C LYS 15 CG 7 1 Y 1 C LYS 15 ? CD ? C LYS 15 CD 8 1 Y 1 C LYS 15 ? CE ? C LYS 15 CE 9 1 Y 1 C LYS 15 ? NZ ? C LYS 15 NZ 10 1 Y 1 D THR 1 ? OG1 ? D THR 1 OG1 11 1 Y 1 D THR 1 ? CG2 ? D THR 1 CG2 12 1 Y 1 D VAL 2 ? CG1 ? D VAL 2 CG1 13 1 Y 1 D VAL 2 ? CG2 ? D VAL 2 CG2 14 1 Y 1 D LYS 14 ? NZ ? D LYS 14 NZ 15 1 Y 1 F LYS 7 ? CE ? F LYS 7 CE 16 1 Y 1 F LYS 7 ? NZ ? F LYS 7 NZ 17 1 Y 1 F LYS 14 ? NZ ? F LYS 14 NZ 18 1 Y 1 G LYS 14 ? CE ? G LYS 14 CE 19 1 Y 1 G LYS 14 ? NZ ? G LYS 14 NZ 20 1 Y 1 H LYS 14 ? NZ ? H LYS 14 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.21.1_5286: ???)' ? 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . ? 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . ? 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 12KM _cell.details ? _cell.formula_units_Z ? _cell.length_a 52.232 _cell.length_a_esd ? _cell.length_b 72.351 _cell.length_b_esd ? _cell.length_c 103.435 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 64 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 12KM _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 12KM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.23 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 61.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M sodium citrate, 13% isopropanol, 0.1 M HEPES' _exptl_crystal_grow.pdbx_pH_range 6.8-7.0 _exptl_crystal_grow.temp 295 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-12-10 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.95372 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'CLSI BEAMLINE 08ID-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.95372 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 08ID-1 _diffrn_source.pdbx_synchrotron_site CLSI # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 12KM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.947 _reflns.d_resolution_low 42.35 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 27605 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.25 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.9 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.68 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.05545 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.02 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2762 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.1 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.971 _reflns_shell.pdbx_CC_star 0.993 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 99.11 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.3002 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 12KM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.95 _refine.ls_d_res_low 42.35 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14639 _refine.ls_number_reflns_R_free 1464 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.25 _refine.ls_percent_reflns_R_free 10.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2050 _refine.ls_R_factor_R_free 0.2368 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2016 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.36 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.23 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 42.35 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 1205 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1060 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.002 ? 1085 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 0.407 ? 1480 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 10.637 ? 361 ? f_dihedral_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.035 ? 182 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.001 ? 160 ? f_plane_restr ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.95 2.02 . . 144 1296 99.00 . . . . 0.2430 . . . . . . . . . . . . . . . 0.2930 'X-RAY DIFFRACTION' 2.02 2.10 . . 143 1289 100.00 . . . . 0.2065 . . . . . . . . . . . . . . . 0.2329 'X-RAY DIFFRACTION' 2.10 2.19 . . 146 1311 100.00 . . . . 0.2004 . . . . . . . . . . . . . . . 0.2176 'X-RAY DIFFRACTION' 2.19 2.31 . . 136 1231 95.00 . . . . 0.2365 . . . . . . . . . . . . . . . 0.2748 'X-RAY DIFFRACTION' 2.31 2.45 . . 148 1329 100.00 . . . . 0.2084 . . . . . . . . . . . . . . . 0.2468 'X-RAY DIFFRACTION' 2.45 2.64 . . 146 1312 100.00 . . . . 0.2114 . . . . . . . . . . . . . . . 0.2588 'X-RAY DIFFRACTION' 2.64 2.91 . . 146 1313 100.00 . . . . 0.2167 . . . . . . . . . . . . . . . 0.2907 'X-RAY DIFFRACTION' 2.91 3.33 . . 148 1337 100.00 . . . . 0.2079 . . . . . . . . . . . . . . . 0.2441 'X-RAY DIFFRACTION' 3.33 4.19 . . 149 1340 100.00 . . . . 0.1894 . . . . . . . . . . . . . . . 0.2252 'X-RAY DIFFRACTION' 4.19 42.35 . . 158 1417 99.00 . . . . 0.1838 . . . . . . . . . . . . . . . 0.2005 # _struct.entry_id 12KM _struct.title 'Supramolecular assembly of a staphylococcal delta-toxin peptide fragment, STIP3-G3Aib' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 12KM _struct_keywords.text 'Antimicrobial peptide, Delta toxin, ANTIMICROBIAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 12KM _struct_ref.pdbx_db_accession 12KM _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 12KM A 1 ? 17 ? 12KM 1 ? 17 ? 1 17 2 1 12KM B 1 ? 17 ? 12KM 1 ? 17 ? 1 17 3 1 12KM C 1 ? 17 ? 12KM 1 ? 17 ? 1 17 4 1 12KM D 1 ? 17 ? 12KM 1 ? 17 ? 1 17 5 1 12KM E 1 ? 17 ? 12KM 1 ? 17 ? 1 17 6 1 12KM F 1 ? 17 ? 12KM 1 ? 17 ? 1 17 7 1 12KM G 1 ? 17 ? 12KM 1 ? 17 ? 1 17 8 1 12KM H 1 ? 17 ? 12KM 1 ? 17 ? 1 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6450 ? 1 MORE -58 ? 1 'SSA (A^2)' 8460 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 1 ? ALA A 17 ? THR A 1 ALA A 17 1 ? 17 HELX_P HELX_P2 AA2 VAL B 2 ? ALA B 17 ? VAL B 2 ALA B 17 1 ? 16 HELX_P HELX_P3 AA3 VAL C 2 ? ALA C 17 ? VAL C 2 ALA C 17 1 ? 16 HELX_P HELX_P4 AA4 VAL D 2 ? ALA D 17 ? VAL D 2 ALA D 17 1 ? 16 HELX_P HELX_P5 AA5 VAL E 2 ? ALA E 17 ? VAL E 2 ALA E 17 1 ? 16 HELX_P HELX_P6 AA6 VAL F 2 ? ALA F 17 ? VAL F 2 ALA F 17 1 ? 16 HELX_P HELX_P7 AA7 VAL G 2 ? ALA G 17 ? VAL G 2 ALA G 17 1 ? 16 HELX_P HELX_P8 AA8 VAL H 2 ? ALA H 17 ? VAL H 2 ALA H 17 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A VAL 2 C ? ? ? 1_555 A AIB 3 N ? ? A VAL 2 A AIB 3 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A AIB 3 C ? ? ? 1_555 A GLY 4 N ? ? A AIB 3 A GLY 4 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? B VAL 2 C ? ? ? 1_555 B AIB 3 N ? ? B VAL 2 B AIB 3 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? B AIB 3 C ? ? ? 1_555 B GLY 4 N ? ? B AIB 3 B GLY 4 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? C VAL 2 C ? ? ? 1_555 C AIB 3 N ? ? C VAL 2 C AIB 3 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? C AIB 3 C ? ? ? 1_555 C GLY 4 N ? ? C AIB 3 C GLY 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? D VAL 2 C ? ? ? 1_555 D AIB 3 N ? ? D VAL 2 D AIB 3 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale8 covale both ? D AIB 3 C ? ? ? 1_555 D GLY 4 N ? ? D AIB 3 D GLY 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale9 covale both ? E VAL 2 C ? ? ? 1_555 E AIB 3 N ? ? E VAL 2 E AIB 3 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale10 covale both ? E AIB 3 C ? ? ? 1_555 E GLY 4 N ? ? E AIB 3 E GLY 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale11 covale both ? F VAL 2 C ? ? ? 1_555 F AIB 3 N ? ? F VAL 2 F AIB 3 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale12 covale both ? F AIB 3 C ? ? ? 1_555 F GLY 4 N ? ? F AIB 3 F GLY 4 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale13 covale both ? G VAL 2 C ? ? ? 1_555 G AIB 3 N ? ? G VAL 2 G AIB 3 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale14 covale both ? G AIB 3 C ? ? ? 1_555 G GLY 4 N ? ? G AIB 3 G GLY 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale15 covale both ? H VAL 2 C ? ? ? 1_555 H AIB 3 N ? ? H VAL 2 H AIB 3 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale16 covale both ? H AIB 3 C ? ? ? 1_555 H GLY 4 N ? ? H AIB 3 H GLY 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 AIB A 3 ? . . . . AIB A 3 ? 1_555 . . . . . . . ALA 1 AIB Methylation 'Named protein modification' 2 AIB B 3 ? . . . . AIB B 3 ? 1_555 . . . . . . . ALA 1 AIB Methylation 'Named protein modification' 3 AIB C 3 ? . . . . AIB C 3 ? 1_555 . . . . . . . ALA 1 AIB Methylation 'Named protein modification' 4 AIB D 3 ? . . . . AIB D 3 ? 1_555 . . . . . . . ALA 1 AIB Methylation 'Named protein modification' 5 AIB E 3 ? . . . . AIB E 3 ? 1_555 . . . . . . . ALA 1 AIB Methylation 'Named protein modification' 6 AIB F 3 ? . . . . AIB F 3 ? 1_555 . . . . . . . ALA 1 AIB Methylation 'Named protein modification' 7 AIB G 3 ? . . . . AIB G 3 ? 1_555 . . . . . . . ALA 1 AIB Methylation 'Named protein modification' 8 AIB H 3 ? . . . . AIB H 3 ? 1_555 . . . . . . . ALA 1 AIB Methylation 'Named protein modification' # _pdbx_entry_details.entry_id 12KM _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -7.4560 -16.0262 11.9494 0.1880 ? -0.0571 ? 0.0380 ? 0.2291 ? 0.0225 ? 0.2622 ? 6.2362 ? 1.2874 ? 2.0707 ? 7.4950 ? 3.2702 ? 2.3716 ? -0.1389 ? 0.2793 ? -0.1939 ? -0.2810 ? 0.1195 ? -0.3137 ? -0.1298 ? 1.1623 ? 0.0668 ? 2 'X-RAY DIFFRACTION' ? refined -15.3981 -8.3165 11.9310 0.2354 ? 0.0068 ? -0.0748 ? 0.2028 ? -0.0097 ? 0.2874 ? 8.2734 ? 5.0685 ? -5.6792 ? 7.0608 ? -5.5513 ? 5.0273 ? -0.2009 ? 0.6086 ? 0.2154 ? -0.1698 ? 0.1912 ? 0.4233 ? -0.0801 ? -0.8097 ? 0.0158 ? 3 'X-RAY DIFFRACTION' ? refined -7.6145 -0.7941 13.7562 0.2973 ? -0.0634 ? 0.0100 ? 0.2874 ? -0.0387 ? 0.2806 ? 7.2883 ? 4.6227 ? -5.1263 ? 8.1995 ? -4.6037 ? 3.9501 ? 0.6552 ? -0.8093 ? 0.1412 ? 0.8326 ? -0.4350 ? 0.4653 ? -0.3967 ? 0.4282 ? -0.1089 ? 4 'X-RAY DIFFRACTION' ? refined -0.8819 -8.3742 11.8372 0.2785 ? -0.0708 ? -0.0480 ? 0.2895 ? 0.0645 ? 0.2995 ? 4.1468 ? -1.4277 ? -2.2330 ? 7.1980 ? -3.3132 ? 3.7026 ? 0.2380 ? -0.7601 ? -0.4513 ? 0.2069 ? 0.0226 ? -0.4883 ? 0.3105 ? 0.3549 ? -0.2695 ? 5 'X-RAY DIFFRACTION' ? refined -19.1071 -15.3015 38.8278 0.2150 ? 0.0345 ? 0.0122 ? 0.2090 ? -0.0392 ? 0.2745 ? 2.9501 ? -0.4543 ? 0.5807 ? 5.5747 ? -4.2421 ? 3.2853 ? -0.0379 ? -0.0356 ? -0.0636 ? -0.0528 ? 0.1678 ? 0.3480 ? -0.5075 ? -0.6878 ? -0.0671 ? 6 'X-RAY DIFFRACTION' ? refined -9.6330 -9.7706 39.2680 0.2428 ? 0.0197 ? -0.0203 ? 0.1369 ? 0.0315 ? 0.2612 ? 6.9969 ? -1.8792 ? -0.8528 ? 4.5988 ? 4.5010 ? 4.7921 ? -0.1671 ? -0.3673 ? 0.1186 ? 0.2744 ? 0.2779 ? -0.3645 ? -0.4274 ? 0.1314 ? -0.0842 ? 7 'X-RAY DIFFRACTION' ? refined -15.0336 -0.6042 37.4118 0.3439 ? 0.0181 ? -0.0377 ? 0.1456 ? 0.0100 ? 0.2950 ? 5.2829 ? -2.7032 ? -3.0373 ? 7.1912 ? 5.2279 ? 4.0646 ? 0.0586 ? 0.0611 ? 0.5401 ? -0.5021 ? 0.1749 ? -0.3177 ? -0.7030 ? 0.2725 ? -0.1011 ? 8 'X-RAY DIFFRACTION' ? refined -23.7358 -6.1719 39.6659 0.2877 ? 0.0947 ? 0.0190 ? 0.2255 ? -0.0972 ? 0.3199 ? 7.0358 ? -1.9118 ? 3.7097 ? 5.6242 ? -1.9977 ? 4.1386 ? -0.3136 ? -0.5335 ? 0.3130 ? 0.2701 ? 0.0660 ? 0.2575 ? -0.1054 ? -0.2588 ? 0.2237 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'A' and resid 1 through 17) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'B' and resid 1 through 17) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'C' and resid 1 through 17) ; 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'D' and resid 1 through 17) ; 5 'X-RAY DIFFRACTION' 5 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'E' and resid 1 through 17) ; 6 'X-RAY DIFFRACTION' 6 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'F' and resid 1 through 17) ; 7 'X-RAY DIFFRACTION' 7 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'G' and resid 1 through 17) ; 8 'X-RAY DIFFRACTION' 8 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'H' and resid 1 through 17) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AIB N N N N 1 AIB CA C N N 2 AIB C C N N 3 AIB O O N N 4 AIB OXT O N N 5 AIB CB1 C N N 6 AIB CB2 C N N 7 AIB H H N N 8 AIB H2 H N N 9 AIB HXT H N N 10 AIB HB11 H N N 11 AIB HB12 H N N 12 AIB HB13 H N N 13 AIB HB21 H N N 14 AIB HB22 H N N 15 AIB HB23 H N N 16 ALA N N N N 17 ALA CA C N S 18 ALA C C N N 19 ALA O O N N 20 ALA CB C N N 21 ALA OXT O N N 22 ALA H H N N 23 ALA H2 H N N 24 ALA HA H N N 25 ALA HB1 H N N 26 ALA HB2 H N N 27 ALA HB3 H N N 28 ALA HXT H N N 29 ASP N N N N 30 ASP CA C N S 31 ASP C C N N 32 ASP O O N N 33 ASP CB C N N 34 ASP CG C N N 35 ASP OD1 O N N 36 ASP OD2 O N N 37 ASP OXT O N N 38 ASP H H N N 39 ASP H2 H N N 40 ASP HA H N N 41 ASP HB2 H N N 42 ASP HB3 H N N 43 ASP HD2 H N N 44 ASP HXT H N N 45 EDO C1 C N N 46 EDO O1 O N N 47 EDO C2 C N N 48 EDO O2 O N N 49 EDO H11 H N N 50 EDO H12 H N N 51 EDO HO1 H N N 52 EDO H21 H N N 53 EDO H22 H N N 54 EDO HO2 H N N 55 GLY N N N N 56 GLY CA C N N 57 GLY C C N N 58 GLY O O N N 59 GLY OXT O N N 60 GLY H H N N 61 GLY H2 H N N 62 GLY HA2 H N N 63 GLY HA3 H N N 64 GLY HXT H N N 65 HOH O O N N 66 HOH H1 H N N 67 HOH H2 H N N 68 ILE N N N N 69 ILE CA C N S 70 ILE C C N N 71 ILE O O N N 72 ILE CB C N S 73 ILE CG1 C N N 74 ILE CG2 C N N 75 ILE CD1 C N N 76 ILE OXT O N N 77 ILE H H N N 78 ILE H2 H N N 79 ILE HA H N N 80 ILE HB H N N 81 ILE HG12 H N N 82 ILE HG13 H N N 83 ILE HG21 H N N 84 ILE HG22 H N N 85 ILE HG23 H N N 86 ILE HD11 H N N 87 ILE HD12 H N N 88 ILE HD13 H N N 89 ILE HXT H N N 90 LEU N N N N 91 LEU CA C N S 92 LEU C C N N 93 LEU O O N N 94 LEU CB C N N 95 LEU CG C N N 96 LEU CD1 C N N 97 LEU CD2 C N N 98 LEU OXT O N N 99 LEU H H N N 100 LEU H2 H N N 101 LEU HA H N N 102 LEU HB2 H N N 103 LEU HB3 H N N 104 LEU HG H N N 105 LEU HD11 H N N 106 LEU HD12 H N N 107 LEU HD13 H N N 108 LEU HD21 H N N 109 LEU HD22 H N N 110 LEU HD23 H N N 111 LEU HXT H N N 112 LYS N N N N 113 LYS CA C N S 114 LYS C C N N 115 LYS O O N N 116 LYS CB C N N 117 LYS CG C N N 118 LYS CD C N N 119 LYS CE C N N 120 LYS NZ N N N 121 LYS OXT O N N 122 LYS H H N N 123 LYS H2 H N N 124 LYS HA H N N 125 LYS HB2 H N N 126 LYS HB3 H N N 127 LYS HG2 H N N 128 LYS HG3 H N N 129 LYS HD2 H N N 130 LYS HD3 H N N 131 LYS HE2 H N N 132 LYS HE3 H N N 133 LYS HZ1 H N N 134 LYS HZ2 H N N 135 LYS HZ3 H N N 136 LYS HXT H N N 137 PHE N N N N 138 PHE CA C N S 139 PHE C C N N 140 PHE O O N N 141 PHE CB C N N 142 PHE CG C Y N 143 PHE CD1 C Y N 144 PHE CD2 C Y N 145 PHE CE1 C Y N 146 PHE CE2 C Y N 147 PHE CZ C Y N 148 PHE OXT O N N 149 PHE H H N N 150 PHE H2 H N N 151 PHE HA H N N 152 PHE HB2 H N N 153 PHE HB3 H N N 154 PHE HD1 H N N 155 PHE HD2 H N N 156 PHE HE1 H N N 157 PHE HE2 H N N 158 PHE HZ H N N 159 PHE HXT H N N 160 THR N N N N 161 THR CA C N S 162 THR C C N N 163 THR O O N N 164 THR CB C N R 165 THR OG1 O N N 166 THR CG2 C N N 167 THR OXT O N N 168 THR H H N N 169 THR H2 H N N 170 THR HA H N N 171 THR HB H N N 172 THR HG1 H N N 173 THR HG21 H N N 174 THR HG22 H N N 175 THR HG23 H N N 176 THR HXT H N N 177 TRP N N N N 178 TRP CA C N S 179 TRP C C N N 180 TRP O O N N 181 TRP CB C N N 182 TRP CG C Y N 183 TRP CD1 C Y N 184 TRP CD2 C Y N 185 TRP NE1 N Y N 186 TRP CE2 C Y N 187 TRP CE3 C Y N 188 TRP CZ2 C Y N 189 TRP CZ3 C Y N 190 TRP CH2 C Y N 191 TRP OXT O N N 192 TRP H H N N 193 TRP H2 H N N 194 TRP HA H N N 195 TRP HB2 H N N 196 TRP HB3 H N N 197 TRP HD1 H N N 198 TRP HE1 H N N 199 TRP HE3 H N N 200 TRP HZ2 H N N 201 TRP HZ3 H N N 202 TRP HH2 H N N 203 TRP HXT H N N 204 VAL N N N N 205 VAL CA C N S 206 VAL C C N N 207 VAL O O N N 208 VAL CB C N N 209 VAL CG1 C N N 210 VAL CG2 C N N 211 VAL OXT O N N 212 VAL H H N N 213 VAL H2 H N N 214 VAL HA H N N 215 VAL HB H N N 216 VAL HG11 H N N 217 VAL HG12 H N N 218 VAL HG13 H N N 219 VAL HG21 H N N 220 VAL HG22 H N N 221 VAL HG23 H N N 222 VAL HXT H N N 223 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AIB N CA sing N N 1 AIB N H sing N N 2 AIB N H2 sing N N 3 AIB CA C sing N N 4 AIB CA CB1 sing N N 5 AIB CA CB2 sing N N 6 AIB C O doub N N 7 AIB C OXT sing N N 8 AIB OXT HXT sing N N 9 AIB CB1 HB11 sing N N 10 AIB CB1 HB12 sing N N 11 AIB CB1 HB13 sing N N 12 AIB CB2 HB21 sing N N 13 AIB CB2 HB22 sing N N 14 AIB CB2 HB23 sing N N 15 ALA N CA sing N N 16 ALA N H sing N N 17 ALA N H2 sing N N 18 ALA CA C sing N N 19 ALA CA CB sing N N 20 ALA CA HA sing N N 21 ALA C O doub N N 22 ALA C OXT sing N N 23 ALA CB HB1 sing N N 24 ALA CB HB2 sing N N 25 ALA CB HB3 sing N N 26 ALA OXT HXT sing N N 27 ASP N CA sing N N 28 ASP N H sing N N 29 ASP N H2 sing N N 30 ASP CA C sing N N 31 ASP CA CB sing N N 32 ASP CA HA sing N N 33 ASP C O doub N N 34 ASP C OXT sing N N 35 ASP CB CG sing N N 36 ASP CB HB2 sing N N 37 ASP CB HB3 sing N N 38 ASP CG OD1 doub N N 39 ASP CG OD2 sing N N 40 ASP OD2 HD2 sing N N 41 ASP OXT HXT sing N N 42 EDO C1 O1 sing N N 43 EDO C1 C2 sing N N 44 EDO C1 H11 sing N N 45 EDO C1 H12 sing N N 46 EDO O1 HO1 sing N N 47 EDO C2 O2 sing N N 48 EDO C2 H21 sing N N 49 EDO C2 H22 sing N N 50 EDO O2 HO2 sing N N 51 GLY N CA sing N N 52 GLY N H sing N N 53 GLY N H2 sing N N 54 GLY CA C sing N N 55 GLY CA HA2 sing N N 56 GLY CA HA3 sing N N 57 GLY C O doub N N 58 GLY C OXT sing N N 59 GLY OXT HXT sing N N 60 HOH O H1 sing N N 61 HOH O H2 sing N N 62 ILE N CA sing N N 63 ILE N H sing N N 64 ILE N H2 sing N N 65 ILE CA C sing N N 66 ILE CA CB sing N N 67 ILE CA HA sing N N 68 ILE C O doub N N 69 ILE C OXT sing N N 70 ILE CB CG1 sing N N 71 ILE CB CG2 sing N N 72 ILE CB HB sing N N 73 ILE CG1 CD1 sing N N 74 ILE CG1 HG12 sing N N 75 ILE CG1 HG13 sing N N 76 ILE CG2 HG21 sing N N 77 ILE CG2 HG22 sing N N 78 ILE CG2 HG23 sing N N 79 ILE CD1 HD11 sing N N 80 ILE CD1 HD12 sing N N 81 ILE CD1 HD13 sing N N 82 ILE OXT HXT sing N N 83 LEU N CA sing N N 84 LEU N H sing N N 85 LEU N H2 sing N N 86 LEU CA C sing N N 87 LEU CA CB sing N N 88 LEU CA HA sing N N 89 LEU C O doub N N 90 LEU C OXT sing N N 91 LEU CB CG sing N N 92 LEU CB HB2 sing N N 93 LEU CB HB3 sing N N 94 LEU CG CD1 sing N N 95 LEU CG CD2 sing N N 96 LEU CG HG sing N N 97 LEU CD1 HD11 sing N N 98 LEU CD1 HD12 sing N N 99 LEU CD1 HD13 sing N N 100 LEU CD2 HD21 sing N N 101 LEU CD2 HD22 sing N N 102 LEU CD2 HD23 sing N N 103 LEU OXT HXT sing N N 104 LYS N CA sing N N 105 LYS N H sing N N 106 LYS N H2 sing N N 107 LYS CA C sing N N 108 LYS CA CB sing N N 109 LYS CA HA sing N N 110 LYS C O doub N N 111 LYS C OXT sing N N 112 LYS CB CG sing N N 113 LYS CB HB2 sing N N 114 LYS CB HB3 sing N N 115 LYS CG CD sing N N 116 LYS CG HG2 sing N N 117 LYS CG HG3 sing N N 118 LYS CD CE sing N N 119 LYS CD HD2 sing N N 120 LYS CD HD3 sing N N 121 LYS CE NZ sing N N 122 LYS CE HE2 sing N N 123 LYS CE HE3 sing N N 124 LYS NZ HZ1 sing N N 125 LYS NZ HZ2 sing N N 126 LYS NZ HZ3 sing N N 127 LYS OXT HXT sing N N 128 PHE N CA sing N N 129 PHE N H sing N N 130 PHE N H2 sing N N 131 PHE CA C sing N N 132 PHE CA CB sing N N 133 PHE CA HA sing N N 134 PHE C O doub N N 135 PHE C OXT sing N N 136 PHE CB CG sing N N 137 PHE CB HB2 sing N N 138 PHE CB HB3 sing N N 139 PHE CG CD1 doub Y N 140 PHE CG CD2 sing Y N 141 PHE CD1 CE1 sing Y N 142 PHE CD1 HD1 sing N N 143 PHE CD2 CE2 doub Y N 144 PHE CD2 HD2 sing N N 145 PHE CE1 CZ doub Y N 146 PHE CE1 HE1 sing N N 147 PHE CE2 CZ sing Y N 148 PHE CE2 HE2 sing N N 149 PHE CZ HZ sing N N 150 PHE OXT HXT sing N N 151 THR N CA sing N N 152 THR N H sing N N 153 THR N H2 sing N N 154 THR CA C sing N N 155 THR CA CB sing N N 156 THR CA HA sing N N 157 THR C O doub N N 158 THR C OXT sing N N 159 THR CB OG1 sing N N 160 THR CB CG2 sing N N 161 THR CB HB sing N N 162 THR OG1 HG1 sing N N 163 THR CG2 HG21 sing N N 164 THR CG2 HG22 sing N N 165 THR CG2 HG23 sing N N 166 THR OXT HXT sing N N 167 TRP N CA sing N N 168 TRP N H sing N N 169 TRP N H2 sing N N 170 TRP CA C sing N N 171 TRP CA CB sing N N 172 TRP CA HA sing N N 173 TRP C O doub N N 174 TRP C OXT sing N N 175 TRP CB CG sing N N 176 TRP CB HB2 sing N N 177 TRP CB HB3 sing N N 178 TRP CG CD1 doub Y N 179 TRP CG CD2 sing Y N 180 TRP CD1 NE1 sing Y N 181 TRP CD1 HD1 sing N N 182 TRP CD2 CE2 doub Y N 183 TRP CD2 CE3 sing Y N 184 TRP NE1 CE2 sing Y N 185 TRP NE1 HE1 sing N N 186 TRP CE2 CZ2 sing Y N 187 TRP CE3 CZ3 doub Y N 188 TRP CE3 HE3 sing N N 189 TRP CZ2 CH2 doub Y N 190 TRP CZ2 HZ2 sing N N 191 TRP CZ3 CH2 sing Y N 192 TRP CZ3 HZ3 sing N N 193 TRP CH2 HH2 sing N N 194 TRP OXT HXT sing N N 195 VAL N CA sing N N 196 VAL N H sing N N 197 VAL N H2 sing N N 198 VAL CA C sing N N 199 VAL CA CB sing N N 200 VAL CA HA sing N N 201 VAL C O doub N N 202 VAL C OXT sing N N 203 VAL CB CG1 sing N N 204 VAL CB CG2 sing N N 205 VAL CB HB sing N N 206 VAL CG1 HG11 sing N N 207 VAL CG1 HG12 sing N N 208 VAL CG1 HG13 sing N N 209 VAL CG2 HG21 sing N N 210 VAL CG2 HG22 sing N N 211 VAL CG2 HG23 sing N N 212 VAL OXT HXT sing N N 213 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Natural Sciences and Engineering Research Council (NSERC, Canada)' Canada ? 1 'Other government' Canada POC.16.21 2 'Other government' Canada 2022F142 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'We used coordinates of STIP3-1 that we are also depositing along with this structure' # _atom_sites.entry_id 12KM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.019145 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013822 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009668 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ # loop_ #