data_12KN # _entry.id 12KN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 12KN pdb_000012kn 10.2210/pdb12kn/pdb WWPDB D_1000306321 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-10-14 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 12KN _pdbx_database_status.recvd_initial_deposition_date 2026-04-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 3 _pdbx_contact_author.email acr753@mail.usask.ca _pdbx_contact_author.name_first Antonio _pdbx_contact_author.name_last Ruzzini _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5697-5371 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Deeyagahage, K.' 1 0000-0003-4599-5446 'Dhindwal, P.' 2 0000-0003-4409-4160 'Boniecki, T.M.' 3 0000-0002-0854-0891 'Ruzzini, A.' 4 0000-0002-5697-5371 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first e2822225 _citation.page_last e2822225 _citation.title 'Supramolecular Assembly of an Antimicrobial Peptide Into a Pore.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.2822225 _citation.pdbx_database_id_PubMed 42815953 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Deeyagahage, K.' 1 0000-0003-4599-5446 primary 'Dhindwal, P.' 2 0000-0003-4409-4160 primary 'Boniecki, M.T.' 3 0000-0002-0854-0891 primary 'Ruzzini, A.' 4 0000-0002-5697-5371 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn AMP 1892.307 4 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 water nat water 18.015 17 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code TVAGLVKWILDTVKKFA _entity_poly.pdbx_seq_one_letter_code_can TVAGLVKWILDTVKKFA _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 VAL n 1 3 ALA n 1 4 GLY n 1 5 LEU n 1 6 VAL n 1 7 LYS n 1 8 TRP n 1 9 ILE n 1 10 LEU n 1 11 ASP n 1 12 THR n 1 13 VAL n 1 14 LYS n 1 15 LYS n 1 16 PHE n 1 17 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 17 _pdbx_entity_src_syn.organism_scientific 'Staphylococcus auricularis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 29379 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 TRP 8 8 8 TRP TRP A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 PHE 16 16 16 PHE PHE A . n A 1 17 ALA 17 17 17 ALA ALA A . n B 1 1 THR 1 1 1 THR THR B . n B 1 2 VAL 2 2 2 VAL VAL B . n B 1 3 ALA 3 3 3 ALA ALA B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 VAL 6 6 6 VAL VAL B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 TRP 8 8 8 TRP TRP B . n B 1 9 ILE 9 9 9 ILE ILE B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 ASP 11 11 11 ASP ASP B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 VAL 13 13 13 VAL VAL B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 LYS 15 15 15 LYS LYS B . n B 1 16 PHE 16 16 16 PHE PHE B . n B 1 17 ALA 17 17 17 ALA ALA B . n C 1 1 THR 1 1 1 THR THR C . n C 1 2 VAL 2 2 2 VAL VAL C . n C 1 3 ALA 3 3 3 ALA ALA C . n C 1 4 GLY 4 4 4 GLY GLY C . n C 1 5 LEU 5 5 5 LEU LEU C . n C 1 6 VAL 6 6 6 VAL VAL C . n C 1 7 LYS 7 7 7 LYS LYS C . n C 1 8 TRP 8 8 8 TRP TRP C . n C 1 9 ILE 9 9 9 ILE ILE C . n C 1 10 LEU 10 10 10 LEU LEU C . n C 1 11 ASP 11 11 11 ASP ASP C . n C 1 12 THR 12 12 12 THR THR C . n C 1 13 VAL 13 13 13 VAL VAL C . n C 1 14 LYS 14 14 14 LYS LYS C . n C 1 15 LYS 15 15 15 LYS LYS C . n C 1 16 PHE 16 16 16 PHE PHE C . n C 1 17 ALA 17 17 17 ALA ALA C . n D 1 1 THR 1 1 1 THR THR D . n D 1 2 VAL 2 2 2 VAL VAL D . n D 1 3 ALA 3 3 3 ALA ALA D . n D 1 4 GLY 4 4 4 GLY GLY D . n D 1 5 LEU 5 5 5 LEU LEU D . n D 1 6 VAL 6 6 6 VAL VAL D . n D 1 7 LYS 7 7 7 LYS LYS D . n D 1 8 TRP 8 8 8 TRP TRP D . n D 1 9 ILE 9 9 9 ILE ILE D . n D 1 10 LEU 10 10 10 LEU LEU D . n D 1 11 ASP 11 11 11 ASP ASP D . n D 1 12 THR 12 12 12 THR THR D . n D 1 13 VAL 13 13 13 VAL VAL D . n D 1 14 LYS 14 14 14 LYS LYS D . n D 1 15 LYS 15 15 15 LYS LYS D . n D 1 16 PHE 16 16 16 PHE PHE D . n D 1 17 ALA 17 17 17 ALA ALA D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO 1 101 101 EDO EDO A . F 3 HOH 1 201 9 HOH HOH A . F 3 HOH 2 202 8 HOH HOH A . F 3 HOH 3 203 4 HOH HOH A . F 3 HOH 4 204 11 HOH HOH A . F 3 HOH 5 205 13 HOH HOH A . F 3 HOH 6 206 14 HOH HOH A . G 3 HOH 1 101 10 HOH HOH B . H 3 HOH 1 101 3 HOH HOH C . H 3 HOH 2 102 12 HOH HOH C . H 3 HOH 3 103 1 HOH HOH C . I 3 HOH 1 101 6 HOH HOH D . I 3 HOH 2 102 16 HOH HOH D . I 3 HOH 3 103 2 HOH HOH D . I 3 HOH 4 104 5 HOH HOH D . I 3 HOH 5 105 15 HOH HOH D . I 3 HOH 6 106 17 HOH HOH D . I 3 HOH 7 107 7 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 14 ? CE ? A LYS 14 CE 2 1 Y 1 A LYS 14 ? NZ ? A LYS 14 NZ 3 1 Y 1 B LYS 7 ? CE ? B LYS 7 CE 4 1 Y 1 B LYS 7 ? NZ ? B LYS 7 NZ 5 1 Y 1 B LYS 14 ? CD ? B LYS 14 CD 6 1 Y 1 B LYS 14 ? CE ? B LYS 14 CE 7 1 Y 1 B LYS 14 ? NZ ? B LYS 14 NZ 8 1 Y 1 B LYS 15 ? CE ? B LYS 15 CE 9 1 Y 1 B LYS 15 ? NZ ? B LYS 15 NZ 10 1 Y 1 C LYS 14 ? CE ? C LYS 14 CE 11 1 Y 1 C LYS 14 ? NZ ? C LYS 14 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.21.1 ? 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . ? 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . ? 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 12KN _cell.details ? _cell.formula_units_Z ? _cell.length_a 46.135 _cell.length_a_esd ? _cell.length_b 76.932 _cell.length_b_esd ? _cell.length_c 101.149 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 64 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 12KN _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 12KN _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 58.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M sodium citrate, 20% isopropanol, 20% PEG 4000' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 295 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-12-10 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.95 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'CLSI BEAMLINE 08ID-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.95 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 08ID-1 _diffrn_source.pdbx_synchrotron_site CLSI # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 12KN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.39 _reflns.d_resolution_low 38.47 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6852 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.78 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.64 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.1059 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.74 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2269 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.3 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.933 _reflns_shell.pdbx_CC_star 0.983 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 99.83 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 12KN _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.40 _refine.ls_d_res_low 38.47 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3692 _refine.ls_number_reflns_R_free 368 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.78 _refine.ls_percent_reflns_R_free 9.97 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2098 _refine.ls_R_factor_R_free 0.2426 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2063 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.40 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 26.69 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.25 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 525 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 546 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 38.47 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.003 ? 548 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 0.408 ? 744 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 12.215 ? 181 ? f_dihedral_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.035 ? 98 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.002 ? 82 ? f_plane_restr ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.40 2.74 . . 120 1078 100.00 . . . . 0.2352 . . . . . . . . . . . . . . . 0.2957 'X-RAY DIFFRACTION' 2.74 3.45 . . 122 1100 100.00 . . . . 0.2261 . . . . . . . . . . . . . . . 0.2757 # _struct.entry_id 12KN _struct.title 'Supramolecular assembly of a staphylococcal delta-toxin peptide fragment, STIP3-G3A' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 12KN _struct_keywords.text 'Antimicrobial peptide, Delta toxin, ANTIMICROBIAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 12KN _struct_ref.pdbx_db_accession 12KN _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 12KN A 1 ? 17 ? 12KN 1 ? 17 ? 1 17 2 1 12KN B 1 ? 17 ? 12KN 1 ? 17 ? 1 17 3 1 12KN C 1 ? 17 ? 12KN 1 ? 17 ? 1 17 4 1 12KN D 1 ? 17 ? 12KN 1 ? 17 ? 1 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2850 ? 1 MORE -33 ? 1 'SSA (A^2)' 4550 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 1 ? ALA A 17 ? THR A 1 ALA A 17 1 ? 17 HELX_P HELX_P2 AA2 VAL B 2 ? ALA B 17 ? VAL B 2 ALA B 17 1 ? 16 HELX_P HELX_P3 AA3 VAL C 2 ? ALA C 17 ? VAL C 2 ALA C 17 1 ? 16 HELX_P HELX_P4 AA4 GLY D 4 ? ALA D 17 ? GLY D 4 ALA D 17 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_entry_details.entry_id 12KN _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 201 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 5.9780 16.5978 11.6341 0.4693 ? -0.0952 ? -0.0147 ? 0.2167 ? -0.0581 ? 0.3150 ? 9.0780 ? 1.0046 ? 0.8965 ? 7.7119 ? -4.3720 ? 7.3682 ? 0.1535 ? -0.1074 ? 0.0519 ? -0.0235 ? 0.1031 ? 0.9974 ? 0.0484 ? -1.8038 ? 0.1563 ? 2 'X-RAY DIFFRACTION' ? refined 14.6349 9.9537 12.1473 0.7691 ? -0.0108 ? 0.1046 ? 0.2828 ? 0.0095 ? 0.4827 ? 7.6548 ? 2.8231 ? 3.0584 ? 8.0956 ? 3.6663 ? 2.1957 ? -0.1815 ? 0.7892 ? -0.5652 ? -0.4178 ? 0.4576 ? -0.9893 ? 1.0276 ? 0.4319 ? -0.3095 ? 3 'X-RAY DIFFRACTION' ? refined 7.5764 1.7151 13.8831 0.6734 ? -0.1299 ? -0.0036 ? 0.3185 ? 0.0233 ? 0.4476 ? 7.1573 ? 5.1718 ? 6.6178 ? 8.7681 ? 7.6016 ? 9.5829 ? 0.3405 ? -0.0442 ? -0.3359 ? 0.8277 ? -0.1869 ? -0.8771 ? 1.4929 ? 0.3425 ? 0.0558 ? 4 'X-RAY DIFFRACTION' ? refined 0.4414 8.6553 12.1444 0.8151 ? -0.1862 ? 0.0379 ? 0.2377 ? -0.0454 ? 0.3858 ? 7.7032 ? -1.4137 ? 0.6858 ? 8.7748 ? -2.9058 ? 9.3021 ? 0.1338 ? -0.4817 ? 0.1465 ? -0.2101 ? 0.3979 ? 0.1075 ? -1.0060 ? -1.1235 ? -0.3990 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'A' and resid 1 through 101) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'B' and resid 1 through 17) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'C' and resid 1 through 17) ; 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'D' and resid 1 through 17) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASP N N N N 14 ASP CA C N S 15 ASP C C N N 16 ASP O O N N 17 ASP CB C N N 18 ASP CG C N N 19 ASP OD1 O N N 20 ASP OD2 O N N 21 ASP OXT O N N 22 ASP H H N N 23 ASP H2 H N N 24 ASP HA H N N 25 ASP HB2 H N N 26 ASP HB3 H N N 27 ASP HD2 H N N 28 ASP HXT H N N 29 EDO C1 C N N 30 EDO O1 O N N 31 EDO C2 C N N 32 EDO O2 O N N 33 EDO H11 H N N 34 EDO H12 H N N 35 EDO HO1 H N N 36 EDO H21 H N N 37 EDO H22 H N N 38 EDO HO2 H N N 39 GLY N N N N 40 GLY CA C N N 41 GLY C C N N 42 GLY O O N N 43 GLY OXT O N N 44 GLY H H N N 45 GLY H2 H N N 46 GLY HA2 H N N 47 GLY HA3 H N N 48 GLY HXT H N N 49 HOH O O N N 50 HOH H1 H N N 51 HOH H2 H N N 52 ILE N N N N 53 ILE CA C N S 54 ILE C C N N 55 ILE O O N N 56 ILE CB C N S 57 ILE CG1 C N N 58 ILE CG2 C N N 59 ILE CD1 C N N 60 ILE OXT O N N 61 ILE H H N N 62 ILE H2 H N N 63 ILE HA H N N 64 ILE HB H N N 65 ILE HG12 H N N 66 ILE HG13 H N N 67 ILE HG21 H N N 68 ILE HG22 H N N 69 ILE HG23 H N N 70 ILE HD11 H N N 71 ILE HD12 H N N 72 ILE HD13 H N N 73 ILE HXT H N N 74 LEU N N N N 75 LEU CA C N S 76 LEU C C N N 77 LEU O O N N 78 LEU CB C N N 79 LEU CG C N N 80 LEU CD1 C N N 81 LEU CD2 C N N 82 LEU OXT O N N 83 LEU H H N N 84 LEU H2 H N N 85 LEU HA H N N 86 LEU HB2 H N N 87 LEU HB3 H N N 88 LEU HG H N N 89 LEU HD11 H N N 90 LEU HD12 H N N 91 LEU HD13 H N N 92 LEU HD21 H N N 93 LEU HD22 H N N 94 LEU HD23 H N N 95 LEU HXT H N N 96 LYS N N N N 97 LYS CA C N S 98 LYS C C N N 99 LYS O O N N 100 LYS CB C N N 101 LYS CG C N N 102 LYS CD C N N 103 LYS CE C N N 104 LYS NZ N N N 105 LYS OXT O N N 106 LYS H H N N 107 LYS H2 H N N 108 LYS HA H N N 109 LYS HB2 H N N 110 LYS HB3 H N N 111 LYS HG2 H N N 112 LYS HG3 H N N 113 LYS HD2 H N N 114 LYS HD3 H N N 115 LYS HE2 H N N 116 LYS HE3 H N N 117 LYS HZ1 H N N 118 LYS HZ2 H N N 119 LYS HZ3 H N N 120 LYS HXT H N N 121 PHE N N N N 122 PHE CA C N S 123 PHE C C N N 124 PHE O O N N 125 PHE CB C N N 126 PHE CG C Y N 127 PHE CD1 C Y N 128 PHE CD2 C Y N 129 PHE CE1 C Y N 130 PHE CE2 C Y N 131 PHE CZ C Y N 132 PHE OXT O N N 133 PHE H H N N 134 PHE H2 H N N 135 PHE HA H N N 136 PHE HB2 H N N 137 PHE HB3 H N N 138 PHE HD1 H N N 139 PHE HD2 H N N 140 PHE HE1 H N N 141 PHE HE2 H N N 142 PHE HZ H N N 143 PHE HXT H N N 144 THR N N N N 145 THR CA C N S 146 THR C C N N 147 THR O O N N 148 THR CB C N R 149 THR OG1 O N N 150 THR CG2 C N N 151 THR OXT O N N 152 THR H H N N 153 THR H2 H N N 154 THR HA H N N 155 THR HB H N N 156 THR HG1 H N N 157 THR HG21 H N N 158 THR HG22 H N N 159 THR HG23 H N N 160 THR HXT H N N 161 TRP N N N N 162 TRP CA C N S 163 TRP C C N N 164 TRP O O N N 165 TRP CB C N N 166 TRP CG C Y N 167 TRP CD1 C Y N 168 TRP CD2 C Y N 169 TRP NE1 N Y N 170 TRP CE2 C Y N 171 TRP CE3 C Y N 172 TRP CZ2 C Y N 173 TRP CZ3 C Y N 174 TRP CH2 C Y N 175 TRP OXT O N N 176 TRP H H N N 177 TRP H2 H N N 178 TRP HA H N N 179 TRP HB2 H N N 180 TRP HB3 H N N 181 TRP HD1 H N N 182 TRP HE1 H N N 183 TRP HE3 H N N 184 TRP HZ2 H N N 185 TRP HZ3 H N N 186 TRP HH2 H N N 187 TRP HXT H N N 188 VAL N N N N 189 VAL CA C N S 190 VAL C C N N 191 VAL O O N N 192 VAL CB C N N 193 VAL CG1 C N N 194 VAL CG2 C N N 195 VAL OXT O N N 196 VAL H H N N 197 VAL H2 H N N 198 VAL HA H N N 199 VAL HB H N N 200 VAL HG11 H N N 201 VAL HG12 H N N 202 VAL HG13 H N N 203 VAL HG21 H N N 204 VAL HG22 H N N 205 VAL HG23 H N N 206 VAL HXT H N N 207 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASP N CA sing N N 13 ASP N H sing N N 14 ASP N H2 sing N N 15 ASP CA C sing N N 16 ASP CA CB sing N N 17 ASP CA HA sing N N 18 ASP C O doub N N 19 ASP C OXT sing N N 20 ASP CB CG sing N N 21 ASP CB HB2 sing N N 22 ASP CB HB3 sing N N 23 ASP CG OD1 doub N N 24 ASP CG OD2 sing N N 25 ASP OD2 HD2 sing N N 26 ASP OXT HXT sing N N 27 EDO C1 O1 sing N N 28 EDO C1 C2 sing N N 29 EDO C1 H11 sing N N 30 EDO C1 H12 sing N N 31 EDO O1 HO1 sing N N 32 EDO C2 O2 sing N N 33 EDO C2 H21 sing N N 34 EDO C2 H22 sing N N 35 EDO O2 HO2 sing N N 36 GLY N CA sing N N 37 GLY N H sing N N 38 GLY N H2 sing N N 39 GLY CA C sing N N 40 GLY CA HA2 sing N N 41 GLY CA HA3 sing N N 42 GLY C O doub N N 43 GLY C OXT sing N N 44 GLY OXT HXT sing N N 45 HOH O H1 sing N N 46 HOH O H2 sing N N 47 ILE N CA sing N N 48 ILE N H sing N N 49 ILE N H2 sing N N 50 ILE CA C sing N N 51 ILE CA CB sing N N 52 ILE CA HA sing N N 53 ILE C O doub N N 54 ILE C OXT sing N N 55 ILE CB CG1 sing N N 56 ILE CB CG2 sing N N 57 ILE CB HB sing N N 58 ILE CG1 CD1 sing N N 59 ILE CG1 HG12 sing N N 60 ILE CG1 HG13 sing N N 61 ILE CG2 HG21 sing N N 62 ILE CG2 HG22 sing N N 63 ILE CG2 HG23 sing N N 64 ILE CD1 HD11 sing N N 65 ILE CD1 HD12 sing N N 66 ILE CD1 HD13 sing N N 67 ILE OXT HXT sing N N 68 LEU N CA sing N N 69 LEU N H sing N N 70 LEU N H2 sing N N 71 LEU CA C sing N N 72 LEU CA CB sing N N 73 LEU CA HA sing N N 74 LEU C O doub N N 75 LEU C OXT sing N N 76 LEU CB CG sing N N 77 LEU CB HB2 sing N N 78 LEU CB HB3 sing N N 79 LEU CG CD1 sing N N 80 LEU CG CD2 sing N N 81 LEU CG HG sing N N 82 LEU CD1 HD11 sing N N 83 LEU CD1 HD12 sing N N 84 LEU CD1 HD13 sing N N 85 LEU CD2 HD21 sing N N 86 LEU CD2 HD22 sing N N 87 LEU CD2 HD23 sing N N 88 LEU OXT HXT sing N N 89 LYS N CA sing N N 90 LYS N H sing N N 91 LYS N H2 sing N N 92 LYS CA C sing N N 93 LYS CA CB sing N N 94 LYS CA HA sing N N 95 LYS C O doub N N 96 LYS C OXT sing N N 97 LYS CB CG sing N N 98 LYS CB HB2 sing N N 99 LYS CB HB3 sing N N 100 LYS CG CD sing N N 101 LYS CG HG2 sing N N 102 LYS CG HG3 sing N N 103 LYS CD CE sing N N 104 LYS CD HD2 sing N N 105 LYS CD HD3 sing N N 106 LYS CE NZ sing N N 107 LYS CE HE2 sing N N 108 LYS CE HE3 sing N N 109 LYS NZ HZ1 sing N N 110 LYS NZ HZ2 sing N N 111 LYS NZ HZ3 sing N N 112 LYS OXT HXT sing N N 113 PHE N CA sing N N 114 PHE N H sing N N 115 PHE N H2 sing N N 116 PHE CA C sing N N 117 PHE CA CB sing N N 118 PHE CA HA sing N N 119 PHE C O doub N N 120 PHE C OXT sing N N 121 PHE CB CG sing N N 122 PHE CB HB2 sing N N 123 PHE CB HB3 sing N N 124 PHE CG CD1 doub Y N 125 PHE CG CD2 sing Y N 126 PHE CD1 CE1 sing Y N 127 PHE CD1 HD1 sing N N 128 PHE CD2 CE2 doub Y N 129 PHE CD2 HD2 sing N N 130 PHE CE1 CZ doub Y N 131 PHE CE1 HE1 sing N N 132 PHE CE2 CZ sing Y N 133 PHE CE2 HE2 sing N N 134 PHE CZ HZ sing N N 135 PHE OXT HXT sing N N 136 THR N CA sing N N 137 THR N H sing N N 138 THR N H2 sing N N 139 THR CA C sing N N 140 THR CA CB sing N N 141 THR CA HA sing N N 142 THR C O doub N N 143 THR C OXT sing N N 144 THR CB OG1 sing N N 145 THR CB CG2 sing N N 146 THR CB HB sing N N 147 THR OG1 HG1 sing N N 148 THR CG2 HG21 sing N N 149 THR CG2 HG22 sing N N 150 THR CG2 HG23 sing N N 151 THR OXT HXT sing N N 152 TRP N CA sing N N 153 TRP N H sing N N 154 TRP N H2 sing N N 155 TRP CA C sing N N 156 TRP CA CB sing N N 157 TRP CA HA sing N N 158 TRP C O doub N N 159 TRP C OXT sing N N 160 TRP CB CG sing N N 161 TRP CB HB2 sing N N 162 TRP CB HB3 sing N N 163 TRP CG CD1 doub Y N 164 TRP CG CD2 sing Y N 165 TRP CD1 NE1 sing Y N 166 TRP CD1 HD1 sing N N 167 TRP CD2 CE2 doub Y N 168 TRP CD2 CE3 sing Y N 169 TRP NE1 CE2 sing Y N 170 TRP NE1 HE1 sing N N 171 TRP CE2 CZ2 sing Y N 172 TRP CE3 CZ3 doub Y N 173 TRP CE3 HE3 sing N N 174 TRP CZ2 CH2 doub Y N 175 TRP CZ2 HZ2 sing N N 176 TRP CZ3 CH2 sing Y N 177 TRP CZ3 HZ3 sing N N 178 TRP CH2 HH2 sing N N 179 TRP OXT HXT sing N N 180 VAL N CA sing N N 181 VAL N H sing N N 182 VAL N H2 sing N N 183 VAL CA C sing N N 184 VAL CA CB sing N N 185 VAL CA HA sing N N 186 VAL C O doub N N 187 VAL C OXT sing N N 188 VAL CB CG1 sing N N 189 VAL CB CG2 sing N N 190 VAL CB HB sing N N 191 VAL CG1 HG11 sing N N 192 VAL CG1 HG12 sing N N 193 VAL CG1 HG13 sing N N 194 VAL CG2 HG21 sing N N 195 VAL CG2 HG22 sing N N 196 VAL CG2 HG23 sing N N 197 VAL OXT HXT sing N N 198 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Natural Sciences and Engineering Research Council (NSERC, Canada)' Canada ? 1 'Other government' Canada POC.16.21 2 'Other government' Canada 2022F142 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'We used coordinates of STIP3-1 that we are also depositing along with this structure' # _atom_sites.entry_id 12KN _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.021676 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012998 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009886 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ # loop_ #