HEADER IMMUNE SYSTEM 17-APR-26 12TB TITLE BORRELIA BURGDORFERI BBQ03 IN COMPLEX WITH FACTOR H CCP6 AT 1.5A COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: COMPLEMENT FACTOR H; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: H FACTOR 1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORRELIELLA BURGDORFERI B31; SOURCE 3 ORGANISM_TAXID: 224326; SOURCE 4 GENE: BB_Q03; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: CFH, HF, HF1, HF2; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BORRELIA, FACTOR H, COMPLEMENT, IMMUNE EVASION, LYME DISEASE KEYWDS 2 SPIROCHETE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.SRIVASTAVA,B.L.GARCIA REVDAT 1 04-NOV-26 12TB 0 JRNL AUTH A.SRIVASTAVA,B.L.GARCIA JRNL TITL BBQ03 OF THE PARALOGOUS GENE FAMILY 52 FROM LYME DISEASE JRNL TITL 2 SPIROCHETES RECRUITS COMPLEMENT FACTOR H USING A NOVEL JRNL TITL 3 RECOGNITION MODE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 75 861 2019 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2.0_5884 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 36940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5900 - 3.6200 0.99 2586 149 0.1713 0.1692 REMARK 3 2 3.6100 - 2.8700 0.99 2538 144 0.1885 0.1873 REMARK 3 3 2.8700 - 2.5100 0.99 2503 142 0.2052 0.2182 REMARK 3 4 2.5100 - 2.2800 0.99 2490 144 0.2220 0.2755 REMARK 3 5 2.2800 - 2.1100 0.99 2528 148 0.2242 0.2196 REMARK 3 6 2.1100 - 1.9900 0.99 2477 142 0.2305 0.2360 REMARK 3 7 1.9900 - 1.8900 0.99 2525 129 0.2406 0.2633 REMARK 3 8 1.8900 - 1.8100 1.00 2498 156 0.2688 0.2642 REMARK 3 9 1.8100 - 1.7400 1.00 2481 143 0.2571 0.2577 REMARK 3 10 1.7400 - 1.6800 1.00 2469 148 0.2604 0.2740 REMARK 3 11 1.6800 - 1.6300 0.99 2477 133 0.2593 0.3147 REMARK 3 12 1.6300 - 1.5800 0.99 2509 136 0.2774 0.2955 REMARK 3 13 1.5800 - 1.5400 0.99 2470 146 0.3125 0.3273 REMARK 3 14 1.5400 - 1.5000 0.97 2393 136 0.3634 0.3759 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.198 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1778 REMARK 3 ANGLE : 1.030 2409 REMARK 3 CHIRALITY : 0.077 239 REMARK 3 PLANARITY : 0.010 312 REMARK 3 DIHEDRAL : 15.913 674 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 12TB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-26. REMARK 100 THE DEPOSITION ID IS D_1000307228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-25 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38444 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.02500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 43.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DIAMOND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION CONDITION: 0.1 M TRIS REMARK 280 (PH 8.5), 25% [W/V] PEG 3350 SAMPLE: 13.1 MG/ML IN 10MM HEPES PH REMARK 280 7.3, 140 MM NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 21.53430 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.01967 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 21.53430 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 38.01967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 38 REMARK 465 SER A 39 REMARK 465 THR A 40 REMARK 465 GLY A 41 REMARK 465 SER A 42 REMARK 465 ASP A 43 REMARK 465 ASN A 179 REMARK 465 GLY A 180 REMARK 465 LYS A 181 REMARK 465 ILE A 182 REMARK 465 LEU A 183 REMARK 465 GLY B 316 REMARK 465 SER B 317 REMARK 465 THR B 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 177 -37.28 -133.16 REMARK 500 SER B 320 131.96 -39.73 REMARK 500 HIS B 360 -2.85 79.14 REMARK 500 REMARK 500 REMARK: NULL DBREF 12TB A 41 183 UNP Q9S013 Q9S013_BORBU 41 183 DBREF 12TB B 321 388 UNP P08603 CFAH_HUMAN 321 388 SEQADV 12TB GLY A 38 UNP Q9S013 EXPRESSION TAG SEQADV 12TB SER A 39 UNP Q9S013 EXPRESSION TAG SEQADV 12TB THR A 40 UNP Q9S013 EXPRESSION TAG SEQADV 12TB GLY B 316 UNP P08603 EXPRESSION TAG SEQADV 12TB SER B 317 UNP P08603 EXPRESSION TAG SEQADV 12TB THR B 318 UNP P08603 EXPRESSION TAG SEQADV 12TB GLY B 319 UNP P08603 EXPRESSION TAG SEQADV 12TB SER B 320 UNP P08603 EXPRESSION TAG SEQRES 1 A 146 GLY SER THR GLY SER ASP GLU ILE VAL THR GLU GLY ILE SEQRES 2 A 146 PHE SER SER LEU LYS LEU TYR ALA SER GLU HIS ARG LEU SEQRES 3 A 146 LEU VAL GLU ILE LYS LYS THR LEU ILE SER LEU LYS ASP SEQRES 4 A 146 PRO ASN TYR ARG ASP VAL PRO PRO VAL ARG ASP TYR ASN SEQRES 5 A 146 GLU GLU TYR PHE ASN LYS PHE PHE LEU ASP LEU GLY SER SEQRES 6 A 146 GLU GLN SER LYS ASP LEU ILE LYS LEU PHE GLY ARG VAL SEQRES 7 A 146 LYS ASN GLU GLN ASN ASN LYS PHE LYS SER GLU VAL TYR SEQRES 8 A 146 TRP LEU TYR SER CYS ILE SER GLU LEU TYR SER PRO ASP SEQRES 9 A 146 ILE LYS TYR SER GLY GLU GLU GLY SER PRO GLU TYR ASP SEQRES 10 A 146 ARG PHE MET PRO ARG PRO THR ALA TYR GLN GLN TYR LEU SEQRES 11 A 146 LYS VAL LYS ARG GLU ILE GLU ARG ASN THR ILE ASN GLY SEQRES 12 A 146 LYS ILE LEU SEQRES 1 B 73 GLY SER THR GLY SER THR LEU LYS PRO CYS ASP TYR PRO SEQRES 2 B 73 ASP ILE LYS HIS GLY GLY LEU TYR HIS GLU ASN MET ARG SEQRES 3 B 73 ARG PRO TYR PHE PRO VAL ALA VAL GLY LYS TYR TYR SER SEQRES 4 B 73 TYR TYR CYS ASP GLU HIS PHE GLU THR PRO SER GLY SER SEQRES 5 B 73 TYR TRP ASP HIS ILE HIS CYS THR GLN ASP GLY TRP SER SEQRES 6 B 73 PRO ALA VAL PRO CYS LEU ARG LYS FORMUL 3 HOH *149(H2 O) HELIX 1 AA1 PHE A 51 LYS A 55 5 5 HELIX 2 AA2 TYR A 57 LEU A 74 1 18 HELIX 3 AA3 ASN A 89 GLN A 119 1 31 HELIX 4 AA4 LYS A 122 SER A 139 1 18 HELIX 5 AA5 THR A 161 THR A 177 1 17 HELIX 6 AA6 HIS B 337 ARG B 341 5 5 SHEET 1 AA1 4 GLY B 333 LEU B 335 0 SHEET 2 AA1 4 TYR B 352 CYS B 357 -1 O TYR B 356 N GLY B 334 SHEET 3 AA1 4 TRP B 369 THR B 375 -1 O ASP B 370 N TYR B 355 SHEET 4 AA1 4 GLY B 378 SER B 380 -1 O SER B 380 N HIS B 373 SHEET 1 AA2 2 PHE B 361 GLU B 362 0 SHEET 2 AA2 2 LEU B 386 ARG B 387 -1 O LEU B 386 N GLU B 362 SSBOND 1 CYS B 325 CYS B 374 1555 1555 2.01 SSBOND 2 CYS B 357 CYS B 385 1555 1555 2.04 CISPEP 1 PHE B 345 PRO B 346 0 -1.35 CISPEP 2 SER B 380 PRO B 381 0 2.18 CRYST1 78.910 38.900 84.063 90.00 115.24 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012673 0.000000 0.005973 0.00000 SCALE2 0.000000 0.025707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013151 0.00000 CONECT 2367 3150 CONECT 2894 3299 CONECT 3150 2367 CONECT 3299 2894 MASTER 262 0 0 6 6 0 0 6 1865 2 4 18 END