data_12KO # _entry.id 12KO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 12KO pdb_000012ko 10.2210/pdb12ko/pdb WWPDB D_1000306127 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-10-14 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 12KO _pdbx_database_status.recvd_initial_deposition_date 2026-04-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email acr753@mail.usask.ca _pdbx_contact_author.name_first Antonio _pdbx_contact_author.name_last Ruzzini _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5697-5371 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ruzzini, A.' 1 ? 'Dhindwal, P.' 2 ? 'Boniecki, T.M.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first e2822225 _citation.page_last e2822225 _citation.title 'Supramolecular Assembly of an Antimicrobial Peptide Into a Pore.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.2822225 _citation.pdbx_database_id_PubMed 42815953 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Deeyagahage, K.' 1 0000-0003-4599-5446 primary 'Dhindwal, P.' 2 0000-0003-4409-4160 primary 'Boniecki, M.T.' 3 0000-0002-0854-0891 primary 'Ruzzini, A.' 4 0000-0002-5697-5371 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn THR-VAL-GLY-GLY-LEU-VAL-LYS-TRP-ILE-LEU-ASP-THR-VAL-LYS-LYS-PHE-ALA 1878.281 3 ? ? ? ? 2 non-polymer nat 'ISOPROPYL ALCOHOL' 60.095 2 ? ? ? ? 3 non-polymer nat '2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL' 164.200 1 ? ? ? ? 4 water nat water 18.015 15 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code TVGGLVKWILDTVKKFA _entity_poly.pdbx_seq_one_letter_code_can TVGGLVKWILDTVKKFA _entity_poly.pdbx_strand_id B,A,C _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ISOPROPYL ALCOHOL' IPA 3 '2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL' TOE 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 VAL n 1 3 GLY n 1 4 GLY n 1 5 LEU n 1 6 VAL n 1 7 LYS n 1 8 TRP n 1 9 ILE n 1 10 LEU n 1 11 ASP n 1 12 THR n 1 13 VAL n 1 14 LYS n 1 15 LYS n 1 16 PHE n 1 17 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 17 _pdbx_entity_src_syn.organism_scientific 'Staphylococcus auricularis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 29379 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IPA non-polymer . 'ISOPROPYL ALCOHOL' 2-PROPANOL 'C3 H8 O' 60.095 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TOE non-polymer . '2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL' ? 'C7 H16 O4' 164.200 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR B . n A 1 2 VAL 2 2 2 VAL VAL B . n A 1 3 GLY 3 3 3 GLY GLY B . n A 1 4 GLY 4 4 4 GLY GLY B . n A 1 5 LEU 5 5 5 LEU LEU B . n A 1 6 VAL 6 6 6 VAL VAL B . n A 1 7 LYS 7 7 7 LYS LYS B . n A 1 8 TRP 8 8 8 TRP TRP B . n A 1 9 ILE 9 9 9 ILE ILE B . n A 1 10 LEU 10 10 10 LEU LEU B . n A 1 11 ASP 11 11 11 ASP ASP B . n A 1 12 THR 12 12 12 THR THR B . n A 1 13 VAL 13 13 13 VAL VAL B . n A 1 14 LYS 14 14 14 LYS LYS B . n A 1 15 LYS 15 15 15 LYS LYS B . n A 1 16 PHE 16 16 16 PHE PHE B . n A 1 17 ALA 17 17 17 ALA ALA B . n B 1 1 THR 1 1 1 THR THR A . n B 1 2 VAL 2 2 2 VAL VAL A . n B 1 3 GLY 3 3 3 GLY GLY A . n B 1 4 GLY 4 4 4 GLY GLY A . n B 1 5 LEU 5 5 5 LEU LEU A . n B 1 6 VAL 6 6 6 VAL VAL A . n B 1 7 LYS 7 7 7 LYS LYS A . n B 1 8 TRP 8 8 8 TRP TRP A . n B 1 9 ILE 9 9 9 ILE ILE A . n B 1 10 LEU 10 10 10 LEU LEU A . n B 1 11 ASP 11 11 11 ASP ASP A . n B 1 12 THR 12 12 12 THR THR A . n B 1 13 VAL 13 13 13 VAL VAL A . n B 1 14 LYS 14 14 14 LYS LYS A . n B 1 15 LYS 15 15 15 LYS LYS A . n B 1 16 PHE 16 16 16 PHE PHE A . n B 1 17 ALA 17 17 17 ALA ALA A . n C 1 1 THR 1 1 ? ? ? C . n C 1 2 VAL 2 2 2 VAL VAL C . n C 1 3 GLY 3 3 3 GLY GLY C . n C 1 4 GLY 4 4 4 GLY GLY C . n C 1 5 LEU 5 5 5 LEU LEU C . n C 1 6 VAL 6 6 6 VAL VAL C . n C 1 7 LYS 7 7 7 LYS LYS C . n C 1 8 TRP 8 8 8 TRP TRP C . n C 1 9 ILE 9 9 9 ILE ILE C . n C 1 10 LEU 10 10 10 LEU LEU C . n C 1 11 ASP 11 11 11 ASP ASP C . n C 1 12 THR 12 12 12 THR THR C . n C 1 13 VAL 13 13 13 VAL VAL C . n C 1 14 LYS 14 14 14 LYS LYS C . n C 1 15 LYS 15 15 15 LYS LYS C . n C 1 16 PHE 16 16 16 PHE PHE C . n C 1 17 ALA 17 17 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 IPA 1 101 102 IPA IPA A . E 3 TOE 1 102 103 TOE PG4 A . F 2 IPA 1 103 104 IPA IPA A . G 4 HOH 1 101 1 HOH HOH B . G 4 HOH 2 102 4 HOH HOH B . G 4 HOH 3 103 2 HOH HOH B . G 4 HOH 4 104 3 HOH HOH B . G 4 HOH 5 105 10 HOH HOH B . G 4 HOH 6 106 7 HOH HOH B . G 4 HOH 7 107 8 HOH HOH B . H 4 HOH 1 201 11 HOH HOH A . H 4 HOH 2 202 6 HOH HOH A . I 4 HOH 1 101 13 HOH HOH C . I 4 HOH 2 102 5 HOH HOH C . I 4 HOH 3 103 15 HOH HOH C . I 4 HOH 4 104 9 HOH HOH C . I 4 HOH 5 105 14 HOH HOH C . I 4 HOH 6 106 12 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B LYS 14 ? CD ? A LYS 14 CD 2 1 Y 1 B LYS 14 ? CE ? A LYS 14 CE 3 1 Y 1 B LYS 14 ? NZ ? A LYS 14 NZ 4 1 Y 1 A LYS 14 ? CD ? B LYS 14 CD 5 1 Y 1 A LYS 14 ? CE ? B LYS 14 CE 6 1 Y 1 A LYS 14 ? NZ ? B LYS 14 NZ 7 1 Y 1 C LYS 14 ? CG ? C LYS 14 CG 8 1 Y 1 C LYS 14 ? CD ? C LYS 14 CD 9 1 Y 1 C LYS 14 ? CE ? C LYS 14 CE 10 1 Y 1 C LYS 14 ? NZ ? C LYS 14 NZ 11 1 Y 0 C LYS 15 ? O ? C LYS 15 O 12 1 Y 1 C PHE 16 ? CG ? C PHE 16 CG 13 1 Y 1 C PHE 16 ? CD1 ? C PHE 16 CD1 14 1 Y 1 C PHE 16 ? CD2 ? C PHE 16 CD2 15 1 Y 1 C PHE 16 ? CE1 ? C PHE 16 CE1 16 1 Y 1 C PHE 16 ? CE2 ? C PHE 16 CE2 17 1 Y 1 C PHE 16 ? CZ ? C PHE 16 CZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.21.1_5286: ???)' ? 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . ? 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . ? 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 12KO _cell.details ? _cell.formula_units_Z ? _cell.length_a 49.748 _cell.length_a_esd ? _cell.length_b 49.748 _cell.length_b_esd ? _cell.length_c 30.100 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 12KO _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 12KO _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 35.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M sodium citrate, 15% iso-propanol (v/v) 0.1 M HEPES, pH 7.5' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 295 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-12-12 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.18 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'CLSI BEAMLINE 08B1-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.18 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 08B1-1 _diffrn_source.pdbx_synchrotron_site CLSI # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 12KO _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.7 _reflns.d_resolution_low 43.09 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4816 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.90 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 14.3 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 63.89 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star 1 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.02707 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.761 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 483 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.02023 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.999 _reflns_shell.pdbx_CC_star 1 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.07625 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 12KO _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.70 _refine.ls_d_res_low 24.87 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4809 _refine.ls_number_reflns_R_free 471 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.88 _refine.ls_percent_reflns_R_free 9.79 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2013 _refine.ls_R_factor_R_free 0.2430 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1969 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.50 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 29.54 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.20 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 24.87 _refine_hist.number_atoms_solvent 15 _refine_hist.number_atoms_total 404 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 370 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.017 ? 398 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.663 ? 534 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 17.217 ? 133 ? f_dihedral_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.075 ? 67 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 58 ? f_plane_restr ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.70 1.94 . . 152 1430 100.00 . . . . 0.2390 . . . . . . . . . . . . . . . 0.2794 'X-RAY DIFFRACTION' 1.94 2.44 . . 156 1437 100.00 . . . . 0.2087 . . . . . . . . . . . . . . . 0.2533 # _struct.entry_id 12KO _struct.title 'Supramolecular assembly of a staphylococcal delta-toxin peptide fragment, STIP3-1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 12KO _struct_keywords.text 'Antimicrobial peptide, Pore, ANTIMICROBIAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 4 ? H N N 4 ? I N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 12KO _struct_ref.pdbx_db_accession 12KO _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 12KO B 1 ? 17 ? 12KO 1 ? 17 ? 1 17 2 1 12KO A 1 ? 17 ? 12KO 1 ? 17 ? 1 17 3 1 12KO C 1 ? 17 ? 12KO 1 ? 17 ? 1 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 y,-x+y,z+1/6 0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 5.0166666667 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 1 ? ALA A 17 ? THR B 1 ALA B 17 1 ? 17 HELX_P HELX_P2 AA2 VAL B 2 ? ALA B 17 ? VAL A 2 ALA A 17 1 ? 16 HELX_P HELX_P3 AA3 VAL C 6 ? PHE C 16 ? VAL C 6 PHE C 16 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_entry_details.entry_id 12KO _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CG2 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 THR _pdbx_validate_symm_contact.auth_seq_id_1 1 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 C3 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 IPA _pdbx_validate_symm_contact.auth_seq_id_2 101 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_445 _pdbx_validate_symm_contact.dist 1.63 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU C 5 ? ? -155.80 -56.48 2 1 VAL C 6 ? ? 57.81 -46.36 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -17.8432 -12.1887 -1.9812 0.1456 ? 0.0401 ? 0.0180 ? 0.2265 ? -0.0063 ? 0.1208 ? 8.2572 ? -1.6674 ? 4.8387 ? 7.0258 ? -1.7537 ? 7.4178 ? 0.4062 ? 0.4759 ? -0.1424 ? -0.3706 ? 0.0417 ? 0.1650 ? -0.0598 ? -0.0012 ? -0.3887 ? 2 'X-RAY DIFFRACTION' ? refined -20.6097 -5.1201 4.8126 0.2444 ? -0.0149 ? -0.0093 ? 0.1320 ? -0.0579 ? 0.1321 ? 7.6970 ? 2.0239 ? -0.8880 ? 8.4884 ? -3.6546 ? 6.7725 ? -0.1246 ? -0.1934 ? 0.2339 ? 0.2452 ? -0.0237 ? 0.1752 ? -0.3315 ? -0.2526 ? 0.2090 ? 3 'X-RAY DIFFRACTION' ? refined -9.2648 -6.0703 4.3569 0.4139 ? -0.1054 ? 0.0007 ? 0.4328 ? -0.0975 ? 1.1661 ? 3.1427 ? -0.8908 ? 3.6574 ? 3.7894 ? 1.2404 ? 7.0934 ? -0.6911 ? -0.1974 ? 1.1846 ? 0.1634 ? -0.1411 ? -0.6988 ? -0.6699 ? 0.7088 ? 0.6980 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'B' and resid 1 through 17) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'A' and resid 1 through 17) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? ;(chain 'C' and resid 2 through 16) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C THR 1 ? C THR 1 2 1 Y 1 C ALA 17 ? C ALA 17 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASP N N N N 14 ASP CA C N S 15 ASP C C N N 16 ASP O O N N 17 ASP CB C N N 18 ASP CG C N N 19 ASP OD1 O N N 20 ASP OD2 O N N 21 ASP OXT O N N 22 ASP H H N N 23 ASP H2 H N N 24 ASP HA H N N 25 ASP HB2 H N N 26 ASP HB3 H N N 27 ASP HD2 H N N 28 ASP HXT H N N 29 GLY N N N N 30 GLY CA C N N 31 GLY C C N N 32 GLY O O N N 33 GLY OXT O N N 34 GLY H H N N 35 GLY H2 H N N 36 GLY HA2 H N N 37 GLY HA3 H N N 38 GLY HXT H N N 39 HOH O O N N 40 HOH H1 H N N 41 HOH H2 H N N 42 ILE N N N N 43 ILE CA C N S 44 ILE C C N N 45 ILE O O N N 46 ILE CB C N S 47 ILE CG1 C N N 48 ILE CG2 C N N 49 ILE CD1 C N N 50 ILE OXT O N N 51 ILE H H N N 52 ILE H2 H N N 53 ILE HA H N N 54 ILE HB H N N 55 ILE HG12 H N N 56 ILE HG13 H N N 57 ILE HG21 H N N 58 ILE HG22 H N N 59 ILE HG23 H N N 60 ILE HD11 H N N 61 ILE HD12 H N N 62 ILE HD13 H N N 63 ILE HXT H N N 64 IPA C1 C N N 65 IPA C2 C N N 66 IPA C3 C N N 67 IPA O2 O N N 68 IPA H11 H N N 69 IPA H12 H N N 70 IPA H13 H N N 71 IPA H2 H N N 72 IPA H31 H N N 73 IPA H32 H N N 74 IPA H33 H N N 75 IPA HO2 H N N 76 LEU N N N N 77 LEU CA C N S 78 LEU C C N N 79 LEU O O N N 80 LEU CB C N N 81 LEU CG C N N 82 LEU CD1 C N N 83 LEU CD2 C N N 84 LEU OXT O N N 85 LEU H H N N 86 LEU H2 H N N 87 LEU HA H N N 88 LEU HB2 H N N 89 LEU HB3 H N N 90 LEU HG H N N 91 LEU HD11 H N N 92 LEU HD12 H N N 93 LEU HD13 H N N 94 LEU HD21 H N N 95 LEU HD22 H N N 96 LEU HD23 H N N 97 LEU HXT H N N 98 LYS N N N N 99 LYS CA C N S 100 LYS C C N N 101 LYS O O N N 102 LYS CB C N N 103 LYS CG C N N 104 LYS CD C N N 105 LYS CE C N N 106 LYS NZ N N N 107 LYS OXT O N N 108 LYS H H N N 109 LYS H2 H N N 110 LYS HA H N N 111 LYS HB2 H N N 112 LYS HB3 H N N 113 LYS HG2 H N N 114 LYS HG3 H N N 115 LYS HD2 H N N 116 LYS HD3 H N N 117 LYS HE2 H N N 118 LYS HE3 H N N 119 LYS HZ1 H N N 120 LYS HZ2 H N N 121 LYS HZ3 H N N 122 LYS HXT H N N 123 PHE N N N N 124 PHE CA C N S 125 PHE C C N N 126 PHE O O N N 127 PHE CB C N N 128 PHE CG C Y N 129 PHE CD1 C Y N 130 PHE CD2 C Y N 131 PHE CE1 C Y N 132 PHE CE2 C Y N 133 PHE CZ C Y N 134 PHE OXT O N N 135 PHE H H N N 136 PHE H2 H N N 137 PHE HA H N N 138 PHE HB2 H N N 139 PHE HB3 H N N 140 PHE HD1 H N N 141 PHE HD2 H N N 142 PHE HE1 H N N 143 PHE HE2 H N N 144 PHE HZ H N N 145 PHE HXT H N N 146 THR N N N N 147 THR CA C N S 148 THR C C N N 149 THR O O N N 150 THR CB C N R 151 THR OG1 O N N 152 THR CG2 C N N 153 THR OXT O N N 154 THR H H N N 155 THR H2 H N N 156 THR HA H N N 157 THR HB H N N 158 THR HG1 H N N 159 THR HG21 H N N 160 THR HG22 H N N 161 THR HG23 H N N 162 THR HXT H N N 163 TOE "O2'" O N N 164 TOE "CA'" C N N 165 TOE "CB'" C N N 166 TOE "OC'" O N N 167 TOE "CD'" C N N 168 TOE "CE'" C N N 169 TOE "OF'" O N N 170 TOE "CG'" C N N 171 TOE "CH'" C N N 172 TOE "OI'" O N N 173 TOE "CK'" C N N 174 TOE H1 H N N 175 TOE H2 H N N 176 TOE H3 H N N 177 TOE H4 H N N 178 TOE H5 H N N 179 TOE H6 H N N 180 TOE H7 H N N 181 TOE H8 H N N 182 TOE H9 H N N 183 TOE H10 H N N 184 TOE H11 H N N 185 TOE H12 H N N 186 TOE H13 H N N 187 TOE H14 H N N 188 TOE H15 H N N 189 TOE H16 H N N 190 TRP N N N N 191 TRP CA C N S 192 TRP C C N N 193 TRP O O N N 194 TRP CB C N N 195 TRP CG C Y N 196 TRP CD1 C Y N 197 TRP CD2 C Y N 198 TRP NE1 N Y N 199 TRP CE2 C Y N 200 TRP CE3 C Y N 201 TRP CZ2 C Y N 202 TRP CZ3 C Y N 203 TRP CH2 C Y N 204 TRP OXT O N N 205 TRP H H N N 206 TRP H2 H N N 207 TRP HA H N N 208 TRP HB2 H N N 209 TRP HB3 H N N 210 TRP HD1 H N N 211 TRP HE1 H N N 212 TRP HE3 H N N 213 TRP HZ2 H N N 214 TRP HZ3 H N N 215 TRP HH2 H N N 216 TRP HXT H N N 217 VAL N N N N 218 VAL CA C N S 219 VAL C C N N 220 VAL O O N N 221 VAL CB C N N 222 VAL CG1 C N N 223 VAL CG2 C N N 224 VAL OXT O N N 225 VAL H H N N 226 VAL H2 H N N 227 VAL HA H N N 228 VAL HB H N N 229 VAL HG11 H N N 230 VAL HG12 H N N 231 VAL HG13 H N N 232 VAL HG21 H N N 233 VAL HG22 H N N 234 VAL HG23 H N N 235 VAL HXT H N N 236 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASP N CA sing N N 13 ASP N H sing N N 14 ASP N H2 sing N N 15 ASP CA C sing N N 16 ASP CA CB sing N N 17 ASP CA HA sing N N 18 ASP C O doub N N 19 ASP C OXT sing N N 20 ASP CB CG sing N N 21 ASP CB HB2 sing N N 22 ASP CB HB3 sing N N 23 ASP CG OD1 doub N N 24 ASP CG OD2 sing N N 25 ASP OD2 HD2 sing N N 26 ASP OXT HXT sing N N 27 GLY N CA sing N N 28 GLY N H sing N N 29 GLY N H2 sing N N 30 GLY CA C sing N N 31 GLY CA HA2 sing N N 32 GLY CA HA3 sing N N 33 GLY C O doub N N 34 GLY C OXT sing N N 35 GLY OXT HXT sing N N 36 HOH O H1 sing N N 37 HOH O H2 sing N N 38 ILE N CA sing N N 39 ILE N H sing N N 40 ILE N H2 sing N N 41 ILE CA C sing N N 42 ILE CA CB sing N N 43 ILE CA HA sing N N 44 ILE C O doub N N 45 ILE C OXT sing N N 46 ILE CB CG1 sing N N 47 ILE CB CG2 sing N N 48 ILE CB HB sing N N 49 ILE CG1 CD1 sing N N 50 ILE CG1 HG12 sing N N 51 ILE CG1 HG13 sing N N 52 ILE CG2 HG21 sing N N 53 ILE CG2 HG22 sing N N 54 ILE CG2 HG23 sing N N 55 ILE CD1 HD11 sing N N 56 ILE CD1 HD12 sing N N 57 ILE CD1 HD13 sing N N 58 ILE OXT HXT sing N N 59 IPA C1 C2 sing N N 60 IPA C1 H11 sing N N 61 IPA C1 H12 sing N N 62 IPA C1 H13 sing N N 63 IPA C2 C3 sing N N 64 IPA C2 O2 sing N N 65 IPA C2 H2 sing N N 66 IPA C3 H31 sing N N 67 IPA C3 H32 sing N N 68 IPA C3 H33 sing N N 69 IPA O2 HO2 sing N N 70 LEU N CA sing N N 71 LEU N H sing N N 72 LEU N H2 sing N N 73 LEU CA C sing N N 74 LEU CA CB sing N N 75 LEU CA HA sing N N 76 LEU C O doub N N 77 LEU C OXT sing N N 78 LEU CB CG sing N N 79 LEU CB HB2 sing N N 80 LEU CB HB3 sing N N 81 LEU CG CD1 sing N N 82 LEU CG CD2 sing N N 83 LEU CG HG sing N N 84 LEU CD1 HD11 sing N N 85 LEU CD1 HD12 sing N N 86 LEU CD1 HD13 sing N N 87 LEU CD2 HD21 sing N N 88 LEU CD2 HD22 sing N N 89 LEU CD2 HD23 sing N N 90 LEU OXT HXT sing N N 91 LYS N CA sing N N 92 LYS N H sing N N 93 LYS N H2 sing N N 94 LYS CA C sing N N 95 LYS CA CB sing N N 96 LYS CA HA sing N N 97 LYS C O doub N N 98 LYS C OXT sing N N 99 LYS CB CG sing N N 100 LYS CB HB2 sing N N 101 LYS CB HB3 sing N N 102 LYS CG CD sing N N 103 LYS CG HG2 sing N N 104 LYS CG HG3 sing N N 105 LYS CD CE sing N N 106 LYS CD HD2 sing N N 107 LYS CD HD3 sing N N 108 LYS CE NZ sing N N 109 LYS CE HE2 sing N N 110 LYS CE HE3 sing N N 111 LYS NZ HZ1 sing N N 112 LYS NZ HZ2 sing N N 113 LYS NZ HZ3 sing N N 114 LYS OXT HXT sing N N 115 PHE N CA sing N N 116 PHE N H sing N N 117 PHE N H2 sing N N 118 PHE CA C sing N N 119 PHE CA CB sing N N 120 PHE CA HA sing N N 121 PHE C O doub N N 122 PHE C OXT sing N N 123 PHE CB CG sing N N 124 PHE CB HB2 sing N N 125 PHE CB HB3 sing N N 126 PHE CG CD1 doub Y N 127 PHE CG CD2 sing Y N 128 PHE CD1 CE1 sing Y N 129 PHE CD1 HD1 sing N N 130 PHE CD2 CE2 doub Y N 131 PHE CD2 HD2 sing N N 132 PHE CE1 CZ doub Y N 133 PHE CE1 HE1 sing N N 134 PHE CE2 CZ sing Y N 135 PHE CE2 HE2 sing N N 136 PHE CZ HZ sing N N 137 PHE OXT HXT sing N N 138 THR N CA sing N N 139 THR N H sing N N 140 THR N H2 sing N N 141 THR CA C sing N N 142 THR CA CB sing N N 143 THR CA HA sing N N 144 THR C O doub N N 145 THR C OXT sing N N 146 THR CB OG1 sing N N 147 THR CB CG2 sing N N 148 THR CB HB sing N N 149 THR OG1 HG1 sing N N 150 THR CG2 HG21 sing N N 151 THR CG2 HG22 sing N N 152 THR CG2 HG23 sing N N 153 THR OXT HXT sing N N 154 TOE "CK'" "OI'" sing N N 155 TOE "OI'" "CH'" sing N N 156 TOE "CH'" "CG'" sing N N 157 TOE "CG'" "OF'" sing N N 158 TOE "CE'" "OF'" sing N N 159 TOE "CE'" "CD'" sing N N 160 TOE "CA'" "O2'" sing N N 161 TOE "CA'" "CB'" sing N N 162 TOE "OC'" "CB'" sing N N 163 TOE "OC'" "CD'" sing N N 164 TOE "O2'" H1 sing N N 165 TOE "CA'" H2 sing N N 166 TOE "CA'" H3 sing N N 167 TOE "CB'" H4 sing N N 168 TOE "CB'" H5 sing N N 169 TOE "CD'" H6 sing N N 170 TOE "CD'" H7 sing N N 171 TOE "CE'" H8 sing N N 172 TOE "CE'" H9 sing N N 173 TOE "CG'" H10 sing N N 174 TOE "CG'" H11 sing N N 175 TOE "CH'" H12 sing N N 176 TOE "CH'" H13 sing N N 177 TOE "CK'" H14 sing N N 178 TOE "CK'" H15 sing N N 179 TOE "CK'" H16 sing N N 180 TRP N CA sing N N 181 TRP N H sing N N 182 TRP N H2 sing N N 183 TRP CA C sing N N 184 TRP CA CB sing N N 185 TRP CA HA sing N N 186 TRP C O doub N N 187 TRP C OXT sing N N 188 TRP CB CG sing N N 189 TRP CB HB2 sing N N 190 TRP CB HB3 sing N N 191 TRP CG CD1 doub Y N 192 TRP CG CD2 sing Y N 193 TRP CD1 NE1 sing Y N 194 TRP CD1 HD1 sing N N 195 TRP CD2 CE2 doub Y N 196 TRP CD2 CE3 sing Y N 197 TRP NE1 CE2 sing Y N 198 TRP NE1 HE1 sing N N 199 TRP CE2 CZ2 sing Y N 200 TRP CE3 CZ3 doub Y N 201 TRP CE3 HE3 sing N N 202 TRP CZ2 CH2 doub Y N 203 TRP CZ2 HZ2 sing N N 204 TRP CZ3 CH2 sing Y N 205 TRP CZ3 HZ3 sing N N 206 TRP CH2 HH2 sing N N 207 TRP OXT HXT sing N N 208 VAL N CA sing N N 209 VAL N H sing N N 210 VAL N H2 sing N N 211 VAL CA C sing N N 212 VAL CA CB sing N N 213 VAL CA HA sing N N 214 VAL C O doub N N 215 VAL C OXT sing N N 216 VAL CB CG1 sing N N 217 VAL CB CG2 sing N N 218 VAL CB HB sing N N 219 VAL CG1 HG11 sing N N 220 VAL CG1 HG12 sing N N 221 VAL CG1 HG13 sing N N 222 VAL CG2 HG21 sing N N 223 VAL CG2 HG22 sing N N 224 VAL CG2 HG23 sing N N 225 VAL OXT HXT sing N N 226 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Natural Sciences and Engineering Research Council (NSERC, Canada)' Canada ? 1 'Other government' Canada POC.16.21 2 'Other government' Canada 2022F142 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'We used coordinates of Brominated STIP3-1 to determine the initial model of STIP3-1' # _atom_sites.entry_id 12KO _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.020101 _atom_sites.fract_transf_matrix[1][2] 0.011605 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023211 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033223 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ # loop_ #