HEADER TRANSFERASE 22-APR-26 12YI TITLE THE GNMT N-TERMINAL DOMAIN ORCHESTRATES FOLATE-DEPENDENT REGULATION OF TITLE 2 CELLULAR METHYLATION DYNAMICS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 2.1.1.20; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GNMT; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCDNA3.3 KEYWDS GLYCINE N-METHYLTRANSFERASE, GNMT, METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.KRAZ,B.M.LORTON,R.K.HARIJAN,S.HEDGE,J.B.BONANNO,D.SHECHTER REVDAT 1 17-JUN-26 12YI 0 JRNL AUTH I.KRAZ,B.M.LORTON,R.K.HARIJAN,S.HEDGE,J.B.BONANNO,D.SHECHTER JRNL TITL THE GNMT N-TERMINAL DOMAIN ORCHESTRATES FOLATE-DEPENDENT JRNL TITL 2 REGULATION OF CELLULAR METHYLATION DYNAMICS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18_3845 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 5.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 145115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 7278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9700 - 4.4600 0.93 7079 364 0.1246 0.1971 REMARK 3 2 4.4600 - 3.5500 0.92 7004 334 0.1105 0.1830 REMARK 3 3 3.5500 - 3.1000 0.95 7090 304 0.1471 0.2176 REMARK 3 4 3.1000 - 2.8200 0.91 6780 346 0.1768 0.2572 REMARK 3 5 2.8200 - 2.6200 0.92 6925 412 0.2075 0.2583 REMARK 3 6 2.6200 - 2.4600 0.93 6954 366 0.2186 0.2642 REMARK 3 7 2.4600 - 2.3400 0.93 6963 343 0.2323 0.2358 REMARK 3 8 2.3400 - 2.2400 0.90 6715 334 0.2562 0.2578 REMARK 3 9 2.2400 - 2.1500 0.93 6949 340 0.2614 0.3051 REMARK 3 10 2.1500 - 2.0800 0.93 6974 381 0.2732 0.2890 REMARK 3 11 2.0800 - 2.0100 0.93 6930 386 0.2781 0.2991 REMARK 3 12 2.0100 - 1.9600 0.93 6917 362 0.2961 0.3015 REMARK 3 13 1.9600 - 1.9000 0.91 6841 352 0.3229 0.3441 REMARK 3 14 1.9000 - 1.8600 0.91 6813 375 0.3395 0.4031 REMARK 3 15 1.8600 - 1.8200 0.93 6957 330 0.3206 0.3309 REMARK 3 16 1.8200 - 1.7800 0.92 6936 338 0.3186 0.3478 REMARK 3 17 1.7800 - 1.7400 0.92 6856 371 0.3215 0.3319 REMARK 3 18 1.7400 - 1.7100 0.92 6906 365 0.3282 0.3795 REMARK 3 19 1.7100 - 1.6800 0.92 6911 326 0.3219 0.3276 REMARK 3 20 1.6800 - 1.6500 0.88 6570 316 0.3306 0.3448 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 9055 REMARK 3 ANGLE : 0.878 12291 REMARK 3 CHIRALITY : 0.049 1356 REMARK 3 PLANARITY : 0.005 1571 REMARK 3 DIHEDRAL : 9.279 1249 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 12YI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-26. REMARK 100 THE DEPOSITION ID IS D_1000307233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 145249 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 98.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: CRYSTAL AND DATA APPEAR ORTHORHOMBIC HOWEVER DATA PROVED REMARK 200 TO BE FROM MONOCLINIC WITH BETA ANGLE VERY NEAR 90.0 DEGREES. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM FORMATE AND 20% (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 72.07350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 127 REMARK 465 SER A 128 REMARK 465 ALA A 129 REMARK 465 GLY A 231 REMARK 465 GLN A 232 REMARK 465 ASP A 233 REMARK 465 GLY A 234 REMARK 465 SER A 235 REMARK 465 PRO A 236 REMARK 465 ASP A 295 REMARK 465 GLN B 127 REMARK 465 SER B 128 REMARK 465 ALA B 129 REMARK 465 PRO B 228 REMARK 465 GLY B 229 REMARK 465 ALA B 230 REMARK 465 GLY B 231 REMARK 465 GLN B 232 REMARK 465 ASP B 233 REMARK 465 GLY B 234 REMARK 465 SER B 235 REMARK 465 PRO B 236 REMARK 465 ASP B 295 REMARK 465 GLN C 127 REMARK 465 SER C 128 REMARK 465 ALA C 129 REMARK 465 GLY C 231 REMARK 465 GLN C 232 REMARK 465 ASP C 233 REMARK 465 GLY C 234 REMARK 465 SER C 235 REMARK 465 PRO C 236 REMARK 465 ASP C 295 REMARK 465 GLN D 127 REMARK 465 SER D 128 REMARK 465 ALA D 129 REMARK 465 ALA D 230 REMARK 465 GLY D 231 REMARK 465 GLN D 232 REMARK 465 ASP D 233 REMARK 465 GLY D 234 REMARK 465 SER D 235 REMARK 465 PRO D 236 REMARK 465 ASP D 295 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 GLN B 226 CG CD OE1 NE2 REMARK 470 LYS B 264 CG CD CE NZ REMARK 470 GLN B 266 CG CD OE1 NE2 REMARK 470 LYS B 277 CG CD CE NZ REMARK 470 GLU C 26 CG CD OE1 OE2 REMARK 470 GLU C 44 CG CD OE1 OE2 REMARK 470 LYS C 150 CG CD CE NZ REMARK 470 LYS C 193 CG CD CE NZ REMARK 470 ASP C 200 CG OD1 OD2 REMARK 470 GLN C 226 CG CD OE1 NE2 REMARK 470 LYS C 240 CG CD CE NZ REMARK 470 LYS C 277 CG CD CE NZ REMARK 470 GLU D 26 CG CD OE1 OE2 REMARK 470 LYS D 123 CG CD CE NZ REMARK 470 LYS D 150 CG CD CE NZ REMARK 470 LYS D 198 CG CD CE NZ REMARK 470 LYS D 240 CG CD CE NZ REMARK 470 GLN D 266 CG CD OE1 NE2 REMARK 470 LYS D 277 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 473 O HOH D 476 2.05 REMARK 500 O HOH A 466 O HOH A 656 2.07 REMARK 500 O HOH D 576 O HOH D 631 2.07 REMARK 500 O HOH C 445 O HOH C 575 2.08 REMARK 500 O HOH A 463 O HOH A 633 2.08 REMARK 500 O TYR C 94 O HOH C 401 2.08 REMARK 500 O HOH A 534 O HOH C 579 2.09 REMARK 500 O HOH B 429 O HOH B 534 2.09 REMARK 500 OE2 GLU A 77 O HOH A 401 2.11 REMARK 500 OE2 GLU B 115 O HOH B 401 2.12 REMARK 500 O HOH B 552 O HOH B 627 2.12 REMARK 500 O HOH B 579 O HOH B 634 2.13 REMARK 500 O TYR A 276 O HOH A 402 2.13 REMARK 500 O HOH A 619 O HOH A 646 2.13 REMARK 500 OG SER C 142 O HOH C 402 2.13 REMARK 500 O HOH C 539 O HOH C 599 2.13 REMARK 500 O HOH C 413 O HOH C 495 2.13 REMARK 500 OD2 ASP D 63 O HOH D 401 2.14 REMARK 500 O HOH A 421 O HOH A 616 2.14 REMARK 500 O HOH A 557 O HOH A 671 2.14 REMARK 500 O HOH A 545 O HOH B 537 2.15 REMARK 500 O HOH C 554 O HOH D 466 2.17 REMARK 500 O GLY A 57 O HOH A 403 2.17 REMARK 500 O HOH C 546 O HOH C 576 2.18 REMARK 500 O HOH D 600 O HOH D 626 2.18 REMARK 500 OG SER C 72 OG SER C 84 2.18 REMARK 500 O HOH A 643 O HOH A 671 2.18 REMARK 500 O HOH B 535 O HOH B 646 2.18 REMARK 500 O HOH B 547 O HOH B 629 2.18 REMARK 500 OG SER B 252 O HOH B 402 2.19 REMARK 500 O HOH A 457 O HOH A 517 2.19 REMARK 500 O HOH C 566 O HOH C 584 2.19 REMARK 500 OH TYR A 6 O HOH A 404 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 580 O HOH B 430 2555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 126 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 22 -0.09 72.96 REMARK 500 ASP A 148 73.83 -112.70 REMARK 500 PHE A 273 -9.06 78.78 REMARK 500 SER B 40 74.80 -109.47 REMARK 500 GLN B 59 -55.26 -123.35 REMARK 500 ASP B 148 68.52 -103.32 REMARK 500 PHE B 273 -3.03 80.72 REMARK 500 ASP C 37 48.41 -97.83 REMARK 500 SER C 40 72.75 -114.70 REMARK 500 GLN C 59 -59.23 -128.10 REMARK 500 ASP C 148 68.87 -107.03 REMARK 500 GLN C 153 19.48 57.03 REMARK 500 ASN C 214 -3.34 79.77 REMARK 500 PHE C 273 -24.93 87.56 REMARK 500 TYR D 22 -3.17 72.92 REMARK 500 ASP D 148 65.83 -103.99 REMARK 500 GLN D 153 16.55 57.12 REMARK 500 PHE D 273 -13.74 80.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 689 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 690 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 691 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 692 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH B 658 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 659 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH C 602 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH D 634 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH D 635 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH D 636 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH D 637 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH D 638 DISTANCE = 10.83 ANGSTROMS DBREF 12YI A 2 295 UNP Q14749 GNMT_HUMAN 2 295 DBREF 12YI B 2 295 UNP Q14749 GNMT_HUMAN 2 295 DBREF 12YI C 2 295 UNP Q14749 GNMT_HUMAN 2 295 DBREF 12YI D 2 295 UNP Q14749 GNMT_HUMAN 2 295 SEQADV 12YI ACE A 1 UNP Q14749 ACETYLATION SEQADV 12YI ACE B 1 UNP Q14749 ACETYLATION SEQADV 12YI ACE C 1 UNP Q14749 ACETYLATION SEQADV 12YI ACE D 1 UNP Q14749 ACETYLATION SEQRES 1 A 295 ACE VAL ASP SER VAL TYR ARG THR ARG SER LEU GLY VAL SEQRES 2 A 295 ALA ALA GLU GLY LEU PRO ASP GLN TYR ALA ASP GLY GLU SEQRES 3 A 295 ALA ALA ARG VAL TRP GLN LEU TYR ILE GLY ASP THR ARG SEQRES 4 A 295 SER ARG THR ALA GLU TYR LYS ALA TRP LEU LEU GLY LEU SEQRES 5 A 295 LEU ARG GLN HIS GLY CYS GLN ARG VAL LEU ASP VAL ALA SEQRES 6 A 295 CYS GLY THR GLY VAL ASP SER ILE MET LEU VAL GLU GLU SEQRES 7 A 295 GLY PHE SER VAL THR SER VAL ASP ALA SER ASP LYS MET SEQRES 8 A 295 LEU LYS TYR ALA LEU LYS GLU ARG TRP ASN ARG ARG HIS SEQRES 9 A 295 GLU PRO ALA PHE ASP LYS TRP VAL ILE GLU GLU ALA ASN SEQRES 10 A 295 TRP MET THR LEU ASP LYS ASP VAL PRO GLN SER ALA GLU SEQRES 11 A 295 GLY GLY PHE ASP ALA VAL ILE CYS LEU GLY ASN SER PHE SEQRES 12 A 295 ALA HIS LEU PRO ASP CYS LYS GLY ASP GLN SER GLU HIS SEQRES 13 A 295 ARG LEU ALA LEU LYS ASN ILE ALA SER MET VAL ARG ALA SEQRES 14 A 295 GLY GLY LEU LEU VAL ILE ASP HIS ARG ASN TYR ASP HIS SEQRES 15 A 295 ILE LEU SER THR GLY CYS ALA PRO PRO GLY LYS ASN ILE SEQRES 16 A 295 TYR TYR LYS SER ASP LEU THR LYS ASP VAL THR THR SER SEQRES 17 A 295 VAL LEU ILE VAL ASN ASN LYS ALA HIS MET VAL THR LEU SEQRES 18 A 295 ASP TYR THR VAL GLN VAL PRO GLY ALA GLY GLN ASP GLY SEQRES 19 A 295 SER PRO GLY LEU SER LYS PHE ARG LEU SER TYR TYR PRO SEQRES 20 A 295 HIS CYS LEU ALA SER PHE THR GLU LEU LEU GLN ALA ALA SEQRES 21 A 295 PHE GLY GLY LYS CYS GLN HIS SER VAL LEU GLY ASP PHE SEQRES 22 A 295 LYS PRO TYR LYS PRO GLY GLN THR TYR ILE PRO CYS TYR SEQRES 23 A 295 PHE ILE HIS VAL LEU LYS ARG THR ASP SEQRES 1 B 295 ACE VAL ASP SER VAL TYR ARG THR ARG SER LEU GLY VAL SEQRES 2 B 295 ALA ALA GLU GLY LEU PRO ASP GLN TYR ALA ASP GLY GLU SEQRES 3 B 295 ALA ALA ARG VAL TRP GLN LEU TYR ILE GLY ASP THR ARG SEQRES 4 B 295 SER ARG THR ALA GLU TYR LYS ALA TRP LEU LEU GLY LEU SEQRES 5 B 295 LEU ARG GLN HIS GLY CYS GLN ARG VAL LEU ASP VAL ALA SEQRES 6 B 295 CYS GLY THR GLY VAL ASP SER ILE MET LEU VAL GLU GLU SEQRES 7 B 295 GLY PHE SER VAL THR SER VAL ASP ALA SER ASP LYS MET SEQRES 8 B 295 LEU LYS TYR ALA LEU LYS GLU ARG TRP ASN ARG ARG HIS SEQRES 9 B 295 GLU PRO ALA PHE ASP LYS TRP VAL ILE GLU GLU ALA ASN SEQRES 10 B 295 TRP MET THR LEU ASP LYS ASP VAL PRO GLN SER ALA GLU SEQRES 11 B 295 GLY GLY PHE ASP ALA VAL ILE CYS LEU GLY ASN SER PHE SEQRES 12 B 295 ALA HIS LEU PRO ASP CYS LYS GLY ASP GLN SER GLU HIS SEQRES 13 B 295 ARG LEU ALA LEU LYS ASN ILE ALA SER MET VAL ARG ALA SEQRES 14 B 295 GLY GLY LEU LEU VAL ILE ASP HIS ARG ASN TYR ASP HIS SEQRES 15 B 295 ILE LEU SER THR GLY CYS ALA PRO PRO GLY LYS ASN ILE SEQRES 16 B 295 TYR TYR LYS SER ASP LEU THR LYS ASP VAL THR THR SER SEQRES 17 B 295 VAL LEU ILE VAL ASN ASN LYS ALA HIS MET VAL THR LEU SEQRES 18 B 295 ASP TYR THR VAL GLN VAL PRO GLY ALA GLY GLN ASP GLY SEQRES 19 B 295 SER PRO GLY LEU SER LYS PHE ARG LEU SER TYR TYR PRO SEQRES 20 B 295 HIS CYS LEU ALA SER PHE THR GLU LEU LEU GLN ALA ALA SEQRES 21 B 295 PHE GLY GLY LYS CYS GLN HIS SER VAL LEU GLY ASP PHE SEQRES 22 B 295 LYS PRO TYR LYS PRO GLY GLN THR TYR ILE PRO CYS TYR SEQRES 23 B 295 PHE ILE HIS VAL LEU LYS ARG THR ASP SEQRES 1 C 295 ACE VAL ASP SER VAL TYR ARG THR ARG SER LEU GLY VAL SEQRES 2 C 295 ALA ALA GLU GLY LEU PRO ASP GLN TYR ALA ASP GLY GLU SEQRES 3 C 295 ALA ALA ARG VAL TRP GLN LEU TYR ILE GLY ASP THR ARG SEQRES 4 C 295 SER ARG THR ALA GLU TYR LYS ALA TRP LEU LEU GLY LEU SEQRES 5 C 295 LEU ARG GLN HIS GLY CYS GLN ARG VAL LEU ASP VAL ALA SEQRES 6 C 295 CYS GLY THR GLY VAL ASP SER ILE MET LEU VAL GLU GLU SEQRES 7 C 295 GLY PHE SER VAL THR SER VAL ASP ALA SER ASP LYS MET SEQRES 8 C 295 LEU LYS TYR ALA LEU LYS GLU ARG TRP ASN ARG ARG HIS SEQRES 9 C 295 GLU PRO ALA PHE ASP LYS TRP VAL ILE GLU GLU ALA ASN SEQRES 10 C 295 TRP MET THR LEU ASP LYS ASP VAL PRO GLN SER ALA GLU SEQRES 11 C 295 GLY GLY PHE ASP ALA VAL ILE CYS LEU GLY ASN SER PHE SEQRES 12 C 295 ALA HIS LEU PRO ASP CYS LYS GLY ASP GLN SER GLU HIS SEQRES 13 C 295 ARG LEU ALA LEU LYS ASN ILE ALA SER MET VAL ARG ALA SEQRES 14 C 295 GLY GLY LEU LEU VAL ILE ASP HIS ARG ASN TYR ASP HIS SEQRES 15 C 295 ILE LEU SER THR GLY CYS ALA PRO PRO GLY LYS ASN ILE SEQRES 16 C 295 TYR TYR LYS SER ASP LEU THR LYS ASP VAL THR THR SER SEQRES 17 C 295 VAL LEU ILE VAL ASN ASN LYS ALA HIS MET VAL THR LEU SEQRES 18 C 295 ASP TYR THR VAL GLN VAL PRO GLY ALA GLY GLN ASP GLY SEQRES 19 C 295 SER PRO GLY LEU SER LYS PHE ARG LEU SER TYR TYR PRO SEQRES 20 C 295 HIS CYS LEU ALA SER PHE THR GLU LEU LEU GLN ALA ALA SEQRES 21 C 295 PHE GLY GLY LYS CYS GLN HIS SER VAL LEU GLY ASP PHE SEQRES 22 C 295 LYS PRO TYR LYS PRO GLY GLN THR TYR ILE PRO CYS TYR SEQRES 23 C 295 PHE ILE HIS VAL LEU LYS ARG THR ASP SEQRES 1 D 295 ACE VAL ASP SER VAL TYR ARG THR ARG SER LEU GLY VAL SEQRES 2 D 295 ALA ALA GLU GLY LEU PRO ASP GLN TYR ALA ASP GLY GLU SEQRES 3 D 295 ALA ALA ARG VAL TRP GLN LEU TYR ILE GLY ASP THR ARG SEQRES 4 D 295 SER ARG THR ALA GLU TYR LYS ALA TRP LEU LEU GLY LEU SEQRES 5 D 295 LEU ARG GLN HIS GLY CYS GLN ARG VAL LEU ASP VAL ALA SEQRES 6 D 295 CYS GLY THR GLY VAL ASP SER ILE MET LEU VAL GLU GLU SEQRES 7 D 295 GLY PHE SER VAL THR SER VAL ASP ALA SER ASP LYS MET SEQRES 8 D 295 LEU LYS TYR ALA LEU LYS GLU ARG TRP ASN ARG ARG HIS SEQRES 9 D 295 GLU PRO ALA PHE ASP LYS TRP VAL ILE GLU GLU ALA ASN SEQRES 10 D 295 TRP MET THR LEU ASP LYS ASP VAL PRO GLN SER ALA GLU SEQRES 11 D 295 GLY GLY PHE ASP ALA VAL ILE CYS LEU GLY ASN SER PHE SEQRES 12 D 295 ALA HIS LEU PRO ASP CYS LYS GLY ASP GLN SER GLU HIS SEQRES 13 D 295 ARG LEU ALA LEU LYS ASN ILE ALA SER MET VAL ARG ALA SEQRES 14 D 295 GLY GLY LEU LEU VAL ILE ASP HIS ARG ASN TYR ASP HIS SEQRES 15 D 295 ILE LEU SER THR GLY CYS ALA PRO PRO GLY LYS ASN ILE SEQRES 16 D 295 TYR TYR LYS SER ASP LEU THR LYS ASP VAL THR THR SER SEQRES 17 D 295 VAL LEU ILE VAL ASN ASN LYS ALA HIS MET VAL THR LEU SEQRES 18 D 295 ASP TYR THR VAL GLN VAL PRO GLY ALA GLY GLN ASP GLY SEQRES 19 D 295 SER PRO GLY LEU SER LYS PHE ARG LEU SER TYR TYR PRO SEQRES 20 D 295 HIS CYS LEU ALA SER PHE THR GLU LEU LEU GLN ALA ALA SEQRES 21 D 295 PHE GLY GLY LYS CYS GLN HIS SER VAL LEU GLY ASP PHE SEQRES 22 D 295 LYS PRO TYR LYS PRO GLY GLN THR TYR ILE PRO CYS TYR SEQRES 23 D 295 PHE ILE HIS VAL LEU LYS ARG THR ASP HET ACE A 1 3 HET ACE B 1 3 HET ACE C 1 3 HET ACE D 1 3 HET PO4 A 301 5 HET PO4 B 301 5 HET PO4 C 301 5 HET PO4 D 301 5 HETNAM ACE ACETYL GROUP HETNAM PO4 PHOSPHATE ION FORMUL 1 ACE 4(C2 H4 O) FORMUL 5 PO4 4(O4 P 3-) FORMUL 9 HOH *991(H2 O) HELIX 1 AA1 GLY A 25 GLY A 36 1 12 HELIX 2 AA2 THR A 42 HIS A 56 1 15 HELIX 3 AA3 GLY A 69 GLU A 78 1 10 HELIX 4 AA4 SER A 88 ARG A 102 1 15 HELIX 5 AA5 GLU A 105 LYS A 110 1 6 HELIX 6 AA6 ASN A 117 MET A 119 5 3 HELIX 7 AA7 THR A 120 VAL A 125 1 6 HELIX 8 AA8 SER A 142 LEU A 146 5 5 HELIX 9 AA9 GLN A 153 MET A 166 1 14 HELIX 10 AB1 ASN A 179 GLY A 187 1 9 HELIX 11 AB2 CYS A 249 PHE A 261 1 13 HELIX 12 AB3 GLY B 25 GLY B 36 1 12 HELIX 13 AB4 THR B 42 HIS B 56 1 15 HELIX 14 AB5 GLY B 69 GLU B 78 1 10 HELIX 15 AB6 SER B 88 ARG B 102 1 15 HELIX 16 AB7 GLU B 105 LYS B 110 1 6 HELIX 17 AB8 ASN B 117 MET B 119 5 3 HELIX 18 AB9 THR B 120 VAL B 125 1 6 HELIX 19 AC1 SER B 142 LEU B 146 5 5 HELIX 20 AC2 GLN B 153 SER B 165 1 13 HELIX 21 AC3 ASN B 179 GLY B 187 1 9 HELIX 22 AC4 CYS B 249 GLY B 262 1 14 HELIX 23 AC5 GLY C 25 GLY C 36 1 12 HELIX 24 AC6 THR C 42 HIS C 56 1 15 HELIX 25 AC7 GLY C 69 GLU C 78 1 10 HELIX 26 AC8 SER C 88 ARG C 102 1 15 HELIX 27 AC9 GLU C 105 LYS C 110 1 6 HELIX 28 AD1 ASN C 117 MET C 119 5 3 HELIX 29 AD2 THR C 120 VAL C 125 1 6 HELIX 30 AD3 SER C 142 LEU C 146 5 5 HELIX 31 AD4 GLN C 153 MET C 166 1 14 HELIX 32 AD5 ASN C 179 GLY C 187 1 9 HELIX 33 AD6 CYS C 249 PHE C 261 1 13 HELIX 34 AD7 GLY D 25 ASP D 37 1 13 HELIX 35 AD8 THR D 42 HIS D 56 1 15 HELIX 36 AD9 GLY D 69 GLU D 77 1 9 HELIX 37 AE1 SER D 88 ARG D 102 1 15 HELIX 38 AE2 GLU D 105 LYS D 110 1 6 HELIX 39 AE3 ASN D 117 MET D 119 5 3 HELIX 40 AE4 THR D 120 VAL D 125 1 6 HELIX 41 AE5 SER D 142 LEU D 146 5 5 HELIX 42 AE6 GLN D 153 SER D 165 1 13 HELIX 43 AE7 ASN D 179 GLY D 187 1 9 HELIX 44 AE8 CYS D 249 GLY D 262 1 14 SHEET 1 AA1 8 VAL A 112 GLU A 115 0 SHEET 2 AA1 8 SER A 81 ASP A 86 1 N SER A 84 O VAL A 112 SHEET 3 AA1 8 ARG A 60 ASP A 63 1 N ASP A 63 O THR A 83 SHEET 4 AA1 8 PHE A 133 CYS A 138 1 O ALA A 135 N LEU A 62 SHEET 5 AA1 8 VAL A 167 ARG A 178 1 O LEU A 172 N ASP A 134 SHEET 6 AA1 8 TYR A 286 ARG A 293 -1 O PHE A 287 N HIS A 177 SHEET 7 AA1 8 CYS A 265 GLY A 271 -1 N LEU A 270 O ILE A 288 SHEET 8 AA1 8 LYS A 274 PRO A 275 -1 O LYS A 274 N GLY A 271 SHEET 1 AA2 6 LEU A 238 TYR A 245 0 SHEET 2 AA2 6 LYS A 215 GLN A 226 -1 N LEU A 221 O LEU A 243 SHEET 3 AA2 6 LYS A 203 VAL A 212 -1 N LEU A 210 O HIS A 217 SHEET 4 AA2 6 LYS C 203 VAL C 212 -1 O VAL C 209 N ILE A 211 SHEET 5 AA2 6 LYS C 215 GLN C 226 -1 O HIS C 217 N LEU C 210 SHEET 6 AA2 6 LEU C 238 TYR C 245 -1 O LEU C 243 N LEU C 221 SHEET 1 AA3 8 VAL B 112 GLU B 115 0 SHEET 2 AA3 8 SER B 81 ASP B 86 1 N SER B 84 O VAL B 112 SHEET 3 AA3 8 ARG B 60 ASP B 63 1 N ASP B 63 O THR B 83 SHEET 4 AA3 8 PHE B 133 CYS B 138 1 O ALA B 135 N LEU B 62 SHEET 5 AA3 8 VAL B 167 ARG B 178 1 O LEU B 172 N ASP B 134 SHEET 6 AA3 8 TYR B 286 ARG B 293 -1 O HIS B 289 N ILE B 175 SHEET 7 AA3 8 CYS B 265 GLY B 271 -1 N LEU B 270 O ILE B 288 SHEET 8 AA3 8 LYS B 274 PRO B 275 -1 O LYS B 274 N GLY B 271 SHEET 1 AA4 6 SER B 239 TYR B 245 0 SHEET 2 AA4 6 LYS B 215 GLN B 226 -1 N LEU B 221 O LEU B 243 SHEET 3 AA4 6 THR B 202 VAL B 212 -1 N SER B 208 O THR B 220 SHEET 4 AA4 6 LYS D 203 VAL D 212 -1 O VAL D 209 N ILE B 211 SHEET 5 AA4 6 LYS D 215 GLN D 226 -1 O HIS D 217 N LEU D 210 SHEET 6 AA4 6 LEU D 238 TYR D 245 -1 O LEU D 243 N LEU D 221 SHEET 1 AA5 8 VAL C 112 GLU C 115 0 SHEET 2 AA5 8 SER C 81 ASP C 86 1 N SER C 84 O VAL C 112 SHEET 3 AA5 8 ARG C 60 ASP C 63 1 N VAL C 61 O THR C 83 SHEET 4 AA5 8 PHE C 133 CYS C 138 1 O ALA C 135 N LEU C 62 SHEET 5 AA5 8 VAL C 167 ARG C 178 1 O LEU C 172 N ASP C 134 SHEET 6 AA5 8 TYR C 286 ARG C 293 -1 O PHE C 287 N HIS C 177 SHEET 7 AA5 8 CYS C 265 GLY C 271 -1 N LEU C 270 O ILE C 288 SHEET 8 AA5 8 LYS C 274 PRO C 275 -1 O LYS C 274 N GLY C 271 SHEET 1 AA6 8 VAL D 112 GLU D 115 0 SHEET 2 AA6 8 SER D 81 ASP D 86 1 N SER D 84 O VAL D 112 SHEET 3 AA6 8 ARG D 60 ASP D 63 1 N ASP D 63 O THR D 83 SHEET 4 AA6 8 PHE D 133 CYS D 138 1 O ILE D 137 N LEU D 62 SHEET 5 AA6 8 VAL D 167 ARG D 178 1 O VAL D 174 N CYS D 138 SHEET 6 AA6 8 TYR D 286 ARG D 293 -1 O PHE D 287 N HIS D 177 SHEET 7 AA6 8 CYS D 265 GLY D 271 -1 N LEU D 270 O ILE D 288 SHEET 8 AA6 8 LYS D 274 PRO D 275 -1 O LYS D 274 N GLY D 271 LINK C ACE A 1 N VAL A 2 1555 1555 1.33 LINK C ACE B 1 N VAL B 2 1555 1555 1.34 LINK C ACE C 1 N VAL C 2 1555 1555 1.34 LINK C ACE D 1 N VAL D 2 1555 1555 1.33 CRYST1 45.067 144.147 98.130 90.00 90.00 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022189 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010191 0.00000 CONECT 1 2 3 4 CONECT 2 1 CONECT 3 1 CONECT 4 1 CONECT 2236 2237 2238 2239 CONECT 2237 2236 CONECT 2238 2236 CONECT 2239 2236 CONECT 4432 4433 4434 4435 CONECT 4433 4432 CONECT 4434 4432 CONECT 4435 4432 CONECT 6633 6634 6635 6636 CONECT 6634 6633 CONECT 6635 6633 CONECT 6636 6633 CONECT 8839 8840 8841 8842 8843 CONECT 8840 8839 CONECT 8841 8839 CONECT 8842 8839 CONECT 8843 8839 CONECT 8844 8845 8846 8847 8848 CONECT 8845 8844 CONECT 8846 8844 CONECT 8847 8844 CONECT 8848 8844 CONECT 8849 8850 8851 8852 8853 CONECT 8850 8849 CONECT 8851 8849 CONECT 8852 8849 CONECT 8853 8849 CONECT 8854 8855 8856 8857 8858 CONECT 8855 8854 CONECT 8856 8854 CONECT 8857 8854 CONECT 8858 8854 MASTER 422 0 8 44 44 0 0 6 9827 4 36 92 END