HEADER PEPTIDE BINDING PROTEIN 24-APR-26 12ZJ TITLE CRYSTAL STRUCTURE OF USP7 TRAF DOMAIN IN COMPLEX WITH MAGEL2 PEPTIDE TITLE 2 (968-980) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7; COMPND 3 CHAIN: A, C, E; COMPND 4 SYNONYM: DEUBIQUITINATING ENZYME 7,HERPESVIRUS-ASSOCIATED UBIQUITIN- COMPND 5 SPECIFIC PROTEASE,UBIQUITIN THIOESTERASE 7,UBIQUITIN-SPECIFIC- COMPND 6 PROCESSING PROTEASE 7; COMPND 7 EC: 3.4.19.12; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MAGE-LIKE PROTEIN 2; COMPND 11 CHAIN: B, D, F; COMPND 12 FRAGMENT: 968-980; COMPND 13 SYNONYM: NECDIN-LIKE PROTEIN 1,PROTEIN NM15; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP7, HAUSP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B+; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS DEUBIQUITINASE TRAF DOMAIN COMPLEX UBIQUITIN SIGNALING, PEPTIDE KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.J.KORCHAK,I.BEZSONOVA,B.HAO REVDAT 1 10-JUN-26 12ZJ 0 JRNL AUTH E.J.KORCHAK,G.SORIANO,I.SEMENOVA,B.HAO,D.STEPIHAR,T.BAYAT, JRNL AUTH 2 K.FON TACER,I.BEZSONOVA JRNL TITL CRYSTAL STRUCTURE OF USP7 TRAF DOMAIN IN COMPLEX WITH MAGEL2 JRNL TITL 2 PEPTIDE (968-980) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 57208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2853 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.64 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.07 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1145 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2519 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1083 REMARK 3 BIN R VALUE (WORKING SET) : 0.2515 REMARK 3 BIN FREE R VALUE : 0.2586 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.41 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3771 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 472 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.89740 REMARK 3 B22 (A**2) : -3.61970 REMARK 3 B33 (A**2) : 0.72220 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.35520 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.110 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.101 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.104 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.098 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3962 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5378 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1777 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 675 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3962 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 486 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4783 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.61 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.69 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 20.8165 11.2122 -12.9723 REMARK 3 T TENSOR REMARK 3 T11: -0.0334 T22: -0.0391 REMARK 3 T33: -0.0213 T12: 0.0039 REMARK 3 T13: 0.0096 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.2735 L22: 0.4335 REMARK 3 L33: 0.7433 L12: -0.0494 REMARK 3 L13: 0.1081 L23: 0.0327 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: 0.2184 S13: 0.0128 REMARK 3 S21: 0.0247 S22: -0.0350 S23: 0.0325 REMARK 3 S31: 0.0152 S32: -0.0412 S33: 0.0393 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 9.5779 3.3547 13.0142 REMARK 3 T TENSOR REMARK 3 T11: -0.0511 T22: -0.0533 REMARK 3 T33: -0.0422 T12: 0.0086 REMARK 3 T13: 0.0081 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.5150 L22: 1.2865 REMARK 3 L33: 1.0929 L12: -0.4058 REMARK 3 L13: -0.0237 L23: -0.2125 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: -0.0417 S13: 0.1471 REMARK 3 S21: 0.0055 S22: -0.0196 S23: 0.0735 REMARK 3 S31: -0.1701 S32: -0.0632 S33: -0.0162 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { E|* } REMARK 3 ORIGIN FOR THE GROUP (A): 6.9587 -15.0046 40.2135 REMARK 3 T TENSOR REMARK 3 T11: -0.1760 T22: 0.1684 REMARK 3 T33: -0.2105 T12: -0.0193 REMARK 3 T13: -0.0139 T23: 0.1260 REMARK 3 L TENSOR REMARK 3 L11: 1.0052 L22: 1.0569 REMARK 3 L33: 2.9442 L12: -0.8262 REMARK 3 L13: 1.7140 L23: -1.0595 REMARK 3 S TENSOR REMARK 3 S11: -0.0885 S12: 0.2484 S13: 0.0816 REMARK 3 S21: 0.1661 S22: -0.1290 S23: -0.0546 REMARK 3 S31: -0.1070 S32: 0.6213 S33: 0.2175 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 12ZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-26. REMARK 100 THE DEPOSITION ID IS D_1000307435. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920208 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58428 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.628 REMARK 200 RESOLUTION RANGE LOW (A) : 41.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : 0.11200 REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 1.58800 REMARK 200 R SYM FOR SHELL (I) : 1.58800 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250MM MGCL2 100MM TRIS 30% PEG8000, PH REMARK 280 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.34800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 61 REMARK 465 ASP A 62 REMARK 465 SER B 968 REMARK 465 LEU B 979 REMARK 465 GLY B 980 REMARK 465 GLY C 61 REMARK 465 TRP C 205 REMARK 465 LEU D 979 REMARK 465 GLY D 980 REMARK 465 GLY E 61 REMARK 465 ASP E 62 REMARK 465 SER F 968 REMARK 465 ALA F 969 REMARK 465 ALA F 978 REMARK 465 LEU F 979 REMARK 465 GLY F 980 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR C 106 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO E 96 O CYS E 121 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE ARG E 77 O TRP E 205 2656 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS E 121 N - CA - C ANGL. DEV. = 22.6 DEGREES REMARK 500 ASN E 122 N - CA - CB ANGL. DEV. = -14.1 DEGREES REMARK 500 ASN E 122 N - CA - C ANGL. DEV. = -19.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 169 64.03 -105.43 REMARK 500 ALA A 204 45.61 -89.52 REMARK 500 ARG C 66 152.28 -49.05 REMARK 500 ARG C 109 85.55 -154.37 REMARK 500 ASN C 169 65.52 -114.69 REMARK 500 ASN C 169 65.52 -114.47 REMARK 500 CYS E 121 -76.77 -92.29 REMARK 500 ALA E 123 -133.14 65.02 REMARK 500 ASP E 145 115.67 -172.69 REMARK 500 ASN E 169 63.30 -111.98 REMARK 500 ASN E 169 63.30 -111.58 REMARK 500 VAL E 203 -139.60 -101.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN E 122 ALA E 123 90.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 430 O REMARK 620 2 HOH A 549 O 109.5 REMARK 620 N 1 DBREF 12ZJ A 62 205 UNP Q93009 UBP7_HUMAN 62 205 DBREF 12ZJ B 968 980 UNP Q9UJ55 MAGL2_HUMAN 968 980 DBREF 12ZJ C 62 205 UNP Q93009 UBP7_HUMAN 62 205 DBREF 12ZJ D 968 980 UNP Q9UJ55 MAGL2_HUMAN 968 980 DBREF 12ZJ E 62 205 UNP Q93009 UBP7_HUMAN 62 205 DBREF 12ZJ F 968 980 UNP Q9UJ55 MAGL2_HUMAN 968 980 SEQADV 12ZJ GLY A 61 UNP Q93009 EXPRESSION TAG SEQADV 12ZJ GLY C 61 UNP Q93009 EXPRESSION TAG SEQADV 12ZJ GLY E 61 UNP Q93009 EXPRESSION TAG SEQRES 1 A 145 GLY ASP THR SER TRP ARG SER GLU ALA THR PHE GLN PHE SEQRES 2 A 145 THR VAL GLU ARG PHE SER ARG LEU SER GLU SER VAL LEU SEQRES 3 A 145 SER PRO PRO CYS PHE VAL ARG ASN LEU PRO TRP LYS ILE SEQRES 4 A 145 MET VAL MET PRO ARG PHE TYR PRO ASP ARG PRO HIS GLN SEQRES 5 A 145 LYS SER VAL GLY PHE PHE LEU GLN CYS ASN ALA GLU SER SEQRES 6 A 145 ASP SER THR SER TRP SER CYS HIS ALA GLN ALA VAL LEU SEQRES 7 A 145 LYS ILE ILE ASN TYR ARG ASP ASP GLU LYS SER PHE SER SEQRES 8 A 145 ARG ARG ILE SER HIS LEU PHE PHE HIS LYS GLU ASN ASP SEQRES 9 A 145 TRP GLY PHE SER ASN PHE MET ALA TRP SER GLU VAL THR SEQRES 10 A 145 ASP PRO GLU LYS GLY PHE ILE ASP ASP ASP LYS VAL THR SEQRES 11 A 145 PHE GLU VAL PHE VAL GLN ALA ASP ALA PRO HIS GLY VAL SEQRES 12 A 145 ALA TRP SEQRES 1 B 13 SER ALA TRP GLU GLY PRO SER THR SER ARG ALA LEU GLY SEQRES 1 C 145 GLY ASP THR SER TRP ARG SER GLU ALA THR PHE GLN PHE SEQRES 2 C 145 THR VAL GLU ARG PHE SER ARG LEU SER GLU SER VAL LEU SEQRES 3 C 145 SER PRO PRO CYS PHE VAL ARG ASN LEU PRO TRP LYS ILE SEQRES 4 C 145 MET VAL MET PRO ARG PHE TYR PRO ASP ARG PRO HIS GLN SEQRES 5 C 145 LYS SER VAL GLY PHE PHE LEU GLN CYS ASN ALA GLU SER SEQRES 6 C 145 ASP SER THR SER TRP SER CYS HIS ALA GLN ALA VAL LEU SEQRES 7 C 145 LYS ILE ILE ASN TYR ARG ASP ASP GLU LYS SER PHE SER SEQRES 8 C 145 ARG ARG ILE SER HIS LEU PHE PHE HIS LYS GLU ASN ASP SEQRES 9 C 145 TRP GLY PHE SER ASN PHE MET ALA TRP SER GLU VAL THR SEQRES 10 C 145 ASP PRO GLU LYS GLY PHE ILE ASP ASP ASP LYS VAL THR SEQRES 11 C 145 PHE GLU VAL PHE VAL GLN ALA ASP ALA PRO HIS GLY VAL SEQRES 12 C 145 ALA TRP SEQRES 1 D 13 SER ALA TRP GLU GLY PRO SER THR SER ARG ALA LEU GLY SEQRES 1 E 145 GLY ASP THR SER TRP ARG SER GLU ALA THR PHE GLN PHE SEQRES 2 E 145 THR VAL GLU ARG PHE SER ARG LEU SER GLU SER VAL LEU SEQRES 3 E 145 SER PRO PRO CYS PHE VAL ARG ASN LEU PRO TRP LYS ILE SEQRES 4 E 145 MET VAL MET PRO ARG PHE TYR PRO ASP ARG PRO HIS GLN SEQRES 5 E 145 LYS SER VAL GLY PHE PHE LEU GLN CYS ASN ALA GLU SER SEQRES 6 E 145 ASP SER THR SER TRP SER CYS HIS ALA GLN ALA VAL LEU SEQRES 7 E 145 LYS ILE ILE ASN TYR ARG ASP ASP GLU LYS SER PHE SER SEQRES 8 E 145 ARG ARG ILE SER HIS LEU PHE PHE HIS LYS GLU ASN ASP SEQRES 9 E 145 TRP GLY PHE SER ASN PHE MET ALA TRP SER GLU VAL THR SEQRES 10 E 145 ASP PRO GLU LYS GLY PHE ILE ASP ASP ASP LYS VAL THR SEQRES 11 E 145 PHE GLU VAL PHE VAL GLN ALA ASP ALA PRO HIS GLY VAL SEQRES 12 E 145 ALA TRP SEQRES 1 F 13 SER ALA TRP GLU GLY PRO SER THR SER ARG ALA LEU GLY HET MG A 301 1 HET MG A 302 1 HET GOL A 303 6 HET GOL A 304 6 HET GOL A 305 6 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 MG 2(MG 2+) FORMUL 9 GOL 3(C3 H8 O3) FORMUL 12 HOH *472(H2 O) HELIX 1 AA1 ARG A 77 LEU A 81 5 5 HELIX 2 AA2 ASP A 145 SER A 149 5 5 HELIX 3 AA3 TRP A 173 THR A 177 1 5 HELIX 4 AA4 ASP C 62 ARG C 66 5 5 HELIX 5 AA5 ARG C 77 LEU C 81 5 5 HELIX 6 AA6 ASP C 145 SER C 149 5 5 HELIX 7 AA7 TRP C 173 THR C 177 1 5 HELIX 8 AA8 SER D 968 GLY D 972 5 5 HELIX 9 AA9 ARG E 77 LEU E 81 5 5 HELIX 10 AB1 ASP E 145 SER E 149 5 5 HELIX 11 AB2 TRP E 173 THR E 177 1 5 SHEET 1 AA1 4 GLU A 68 VAL A 75 0 SHEET 2 AA1 4 VAL A 189 ALA A 197 -1 O PHE A 191 N PHE A 73 SHEET 3 AA1 4 SER A 131 ILE A 140 -1 N GLN A 135 O GLN A 196 SHEET 4 AA1 4 PHE A 150 PHE A 159 -1 O ARG A 152 N LEU A 138 SHEET 1 AA2 3 VAL A 85 LEU A 86 0 SHEET 2 AA2 3 LEU A 95 ARG A 104 -1 O VAL A 101 N VAL A 85 SHEET 3 AA2 3 CYS A 90 VAL A 92 -1 N CYS A 90 O TRP A 97 SHEET 1 AA3 4 VAL A 85 LEU A 86 0 SHEET 2 AA3 4 LEU A 95 ARG A 104 -1 O VAL A 101 N VAL A 85 SHEET 3 AA3 4 SER A 114 CYS A 121 -1 O GLN A 120 N LYS A 98 SHEET 4 AA3 4 ASP A 164 ALA A 172 -1 O TRP A 165 N LEU A 119 SHEET 1 AA4 4 GLU C 68 VAL C 75 0 SHEET 2 AA4 4 VAL C 189 ALA C 197 -1 O PHE C 191 N PHE C 73 SHEET 3 AA4 4 SER C 131 ILE C 140 -1 N GLN C 135 O GLN C 196 SHEET 4 AA4 4 PHE C 150 PHE C 159 -1 O ARG C 152 N LEU C 138 SHEET 1 AA5 3 VAL C 85 LEU C 86 0 SHEET 2 AA5 3 LEU C 95 TYR C 106 -1 O VAL C 101 N VAL C 85 SHEET 3 AA5 3 CYS C 90 VAL C 92 -1 N CYS C 90 O TRP C 97 SHEET 1 AA6 4 VAL C 85 LEU C 86 0 SHEET 2 AA6 4 LEU C 95 TYR C 106 -1 O VAL C 101 N VAL C 85 SHEET 3 AA6 4 ARG C 109 CYS C 121 -1 O GLY C 116 N MET C 102 SHEET 4 AA6 4 ASP C 164 ALA C 172 -1 O TRP C 165 N LEU C 119 SHEET 1 AA7 4 GLU E 68 VAL E 75 0 SHEET 2 AA7 4 VAL E 189 ALA E 197 -1 O PHE E 191 N PHE E 73 SHEET 3 AA7 4 SER E 131 ILE E 140 -1 N LYS E 139 O GLU E 192 SHEET 4 AA7 4 PHE E 150 PHE E 159 -1 O ARG E 152 N LEU E 138 SHEET 1 AA8 3 VAL E 85 LEU E 86 0 SHEET 2 AA8 3 LEU E 95 PHE E 105 -1 O VAL E 101 N VAL E 85 SHEET 3 AA8 3 CYS E 90 VAL E 92 -1 N CYS E 90 O TRP E 97 SHEET 1 AA9 4 VAL E 85 LEU E 86 0 SHEET 2 AA9 4 LEU E 95 PHE E 105 -1 O VAL E 101 N VAL E 85 SHEET 3 AA9 4 LYS E 113 GLN E 120 -1 O GLN E 120 N LYS E 98 SHEET 4 AA9 4 ASP E 164 ALA E 172 -1 O TRP E 165 N LEU E 119 LINK MG MG A 301 O HOH A 430 1555 1555 2.85 LINK MG MG A 301 O HOH A 549 1555 1555 2.70 CRYST1 57.483 50.696 82.974 90.00 103.78 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017396 0.000000 0.004267 0.00000 SCALE2 0.000000 0.019725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012409 0.00000 CONECT 3821 3870 3989 CONECT 3823 3824 3825 CONECT 3824 3823 CONECT 3825 3823 3826 3827 CONECT 3826 3825 CONECT 3827 3825 3828 CONECT 3828 3827 CONECT 3829 3830 3831 CONECT 3830 3829 CONECT 3831 3829 3832 3833 CONECT 3832 3831 CONECT 3833 3831 3834 CONECT 3834 3833 CONECT 3835 3836 3837 CONECT 3836 3835 CONECT 3837 3835 3838 3839 CONECT 3838 3837 CONECT 3839 3837 3840 CONECT 3840 3839 CONECT 3870 3821 CONECT 3989 3821 MASTER 397 0 5 11 33 0 0 6 4263 6 21 39 END