data_131D # _entry.id 131D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 131D pdb_0000131d 10.2210/pdb131d/pdb RCSB ZDF035 ? ? WWPDB D_1000170075 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-10-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 8 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 131D _pdbx_database_status.recvd_initial_deposition_date 1993-06-18 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bancroft, D.' 1 'Williams, L.D.' 2 'Rich, A.' 3 'Egli, M.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The low-temperature crystal structure of the pure-spermine form of Z-DNA reveals binding of a spermine molecule in the minor groove. ; Biochemistry 33 1073 1086 1994 BICHAW US 0006-2960 0033 ? 8110738 10.1021/bi00171a005 1 'Structure of the Pure-Spermine Form of Z-DNA (Magnesium Free) at 1 Angstrom Resolution' Biochemistry 30 11388 11402 1991 BICHAW US 0006-2960 0033 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bancroft, D.' 1 ? primary 'Williams, L.D.' 2 ? primary 'Rich, A.' 3 ? primary 'Egli, M.' 4 ? 1 'Egli, M.' 5 ? 1 'Williams, L.D.' 6 ? 1 'Gao, Q.' 7 ? 1 'Rich, A.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') ; 1810.205 2 ? ? ? ? 2 non-polymer syn SPERMINE 202.340 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 water nat water 18.015 62 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SPERMINE SPM 3 'SODIUM ION' NA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 DC 1 7 7 DC C B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DC 3 9 9 DC C B . n B 1 4 DG 4 10 10 DG G B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SPM 1 13 13 SPM SPM A . D 3 NA 1 15 15 NA NA A . E 3 NA 1 16 16 NA NA A . F 2 SPM 1 14 14 SPM SPM B . G 4 HOH 1 17 17 HOH HOH A . G 4 HOH 2 18 18 HOH HOH A . G 4 HOH 3 19 19 HOH HOH A . G 4 HOH 4 20 20 HOH HOH A . G 4 HOH 5 21 21 HOH HOH A . G 4 HOH 6 22 22 HOH HOH A . G 4 HOH 7 23 23 HOH HOH A . G 4 HOH 8 24 24 HOH HOH A . G 4 HOH 9 25 25 HOH HOH A . G 4 HOH 10 27 27 HOH HOH A . G 4 HOH 11 28 28 HOH HOH A . G 4 HOH 12 31 31 HOH HOH A . G 4 HOH 13 32 32 HOH HOH A . G 4 HOH 14 35 35 HOH HOH A . G 4 HOH 15 36 36 HOH HOH A . G 4 HOH 16 37 37 HOH HOH A . G 4 HOH 17 39 39 HOH HOH A . G 4 HOH 18 42 42 HOH HOH A . G 4 HOH 19 44 44 HOH HOH A . G 4 HOH 20 45 45 HOH HOH A . G 4 HOH 21 46 46 HOH HOH A . G 4 HOH 22 47 47 HOH HOH A . G 4 HOH 23 55 55 HOH HOH A . G 4 HOH 24 58 58 HOH HOH A . G 4 HOH 25 59 59 HOH HOH A . G 4 HOH 26 60 60 HOH HOH A . G 4 HOH 27 62 62 HOH HOH A . G 4 HOH 28 64 64 HOH HOH A . G 4 HOH 29 65 65 HOH HOH A . G 4 HOH 30 66 66 HOH HOH A . G 4 HOH 31 67 67 HOH HOH A . G 4 HOH 32 68 68 HOH HOH A . G 4 HOH 33 69 69 HOH HOH A . G 4 HOH 34 70 70 HOH HOH A . G 4 HOH 35 71 71 HOH HOH A . G 4 HOH 36 72 72 HOH HOH A . G 4 HOH 37 73 73 HOH HOH A . G 4 HOH 38 74 74 HOH HOH A . H 4 HOH 1 26 26 HOH HOH B . H 4 HOH 2 29 29 HOH HOH B . H 4 HOH 3 30 30 HOH HOH B . H 4 HOH 4 33 33 HOH HOH B . H 4 HOH 5 34 34 HOH HOH B . H 4 HOH 6 38 38 HOH HOH B . H 4 HOH 7 40 40 HOH HOH B . H 4 HOH 8 41 41 HOH HOH B . H 4 HOH 9 43 43 HOH HOH B . H 4 HOH 10 48 48 HOH HOH B . H 4 HOH 11 49 49 HOH HOH B . H 4 HOH 12 50 50 HOH HOH B . H 4 HOH 13 51 51 HOH HOH B . H 4 HOH 14 52 52 HOH HOH B . H 4 HOH 15 53 53 HOH HOH B . H 4 HOH 16 54 54 HOH HOH B . H 4 HOH 17 56 56 HOH HOH B . H 4 HOH 18 57 57 HOH HOH B . H 4 HOH 19 61 61 HOH HOH B . H 4 HOH 20 63 63 HOH HOH B . H 4 HOH 21 75 75 HOH HOH B . H 4 HOH 22 76 76 HOH HOH B . H 4 HOH 23 77 77 HOH HOH B . H 4 HOH 24 78 78 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PROLSQ refinement '(MODIFIED BY G.J.QUIGLEY)' ? 1 MODIFIED refinement 'BY G.J.QUIGLEY' ? 2 # _cell.entry_id 131D _cell.length_a 18.265 _cell.length_b 30.690 _cell.length_c 42.460 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 131D _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 131D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.64 _exptl_crystal.density_percent_sol 25.16 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 SPERMINE ? ? ? 1 3 2 WATER ? ? ? 1 4 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 163.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5R' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 131D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low ? _reflns.d_resolution_high 1.000 _reflns.number_obs 9691 _reflns.number_all 14081 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 131D _refine.ls_number_reflns_obs 9575 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 5.000 _refine.ls_d_res_high 1.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1800000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 62 _refine_hist.number_atoms_total 332 _refine_hist.d_res_high 1.000 _refine_hist.d_res_low 5.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.030 ? ? ? 'X-RAY DIFFRACTION' ? p_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 131D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 131D _struct.title 'THE LOW-TEMPERATURE CRYSTAL STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA REVEALS BINDING OF A SPERMINE MOLECULE IN THE MINOR GROOVE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 131D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 2 ? G N N 4 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 131D _struct_ref.pdbx_db_accession 131D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 131D A 1 ? 6 ? 131D 1 ? 6 ? 1 6 2 1 131D B 1 ? 6 ? 131D 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 "O3'" ? ? ? 1_555 E NA . NA ? ? A DG 4 A NA 16 1_555 ? ? ? ? ? ? ? 2.844 ? ? metalc2 metalc ? ? A DC 5 OP1 ? ? ? 1_555 D NA . NA ? ? A DC 5 A NA 15 1_555 ? ? ? ? ? ? ? 2.660 ? ? metalc3 metalc ? ? A DC 5 OP1 ? ? ? 1_555 E NA . NA ? ? A DC 5 A NA 16 1_555 ? ? ? ? ? ? ? 2.984 ? ? metalc4 metalc ? ? A DC 5 OP2 ? ? ? 1_555 E NA . NA ? ? A DC 5 A NA 16 1_555 ? ? ? ? ? ? ? 2.804 ? ? metalc5 metalc ? ? D NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 15 A HOH 17 1_555 ? ? ? ? ? ? ? 2.918 ? ? metalc6 metalc ? ? D NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 15 A HOH 18 1_555 ? ? ? ? ? ? ? 2.757 ? ? metalc7 metalc ? ? D NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 15 A HOH 20 1_555 ? ? ? ? ? ? ? 2.984 ? ? metalc8 metalc ? ? D NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 15 A HOH 21 1_555 ? ? ? ? ? ? ? 2.902 ? ? metalc9 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 16 A HOH 18 1_555 ? ? ? ? ? ? ? 2.794 ? ? metalc10 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 16 A HOH 22 1_555 ? ? ? ? ? ? ? 2.809 ? ? metalc11 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 16 A HOH 23 1_555 ? ? ? ? ? ? ? 2.607 ? ? metalc12 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 16 A HOH 24 1_555 ? ? ? ? ? ? ? 2.750 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O3'" ? A DG 4 ? A DG 4 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 OP1 ? A DC 5 ? A DC 5 ? 1_555 49.3 ? 2 "O3'" ? A DG 4 ? A DG 4 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 OP2 ? A DC 5 ? A DC 5 ? 1_555 50.7 ? 3 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 OP2 ? A DC 5 ? A DC 5 ? 1_555 49.5 ? 4 "O3'" ? A DG 4 ? A DG 4 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 18 ? 1_555 84.0 ? 5 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 18 ? 1_555 70.9 ? 6 OP2 ? A DC 5 ? A DC 5 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 18 ? 1_555 119.3 ? 7 "O3'" ? A DG 4 ? A DG 4 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 22 ? 1_555 162.0 ? 8 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 22 ? 1_555 136.3 ? 9 OP2 ? A DC 5 ? A DC 5 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 22 ? 1_555 116.6 ? 10 O ? G HOH . ? A HOH 18 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 22 ? 1_555 113.9 ? 11 "O3'" ? A DG 4 ? A DG 4 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 23 ? 1_555 105.7 ? 12 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 23 ? 1_555 147.8 ? 13 OP2 ? A DC 5 ? A DC 5 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 23 ? 1_555 135.8 ? 14 O ? G HOH . ? A HOH 18 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 23 ? 1_555 88.5 ? 15 O ? G HOH . ? A HOH 22 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 23 ? 1_555 74.3 ? 16 "O3'" ? A DG 4 ? A DG 4 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 24 ? 1_555 107.2 ? 17 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 24 ? 1_555 106.5 ? 18 OP2 ? A DC 5 ? A DC 5 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 24 ? 1_555 63.5 ? 19 O ? G HOH . ? A HOH 18 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 24 ? 1_555 163.1 ? 20 O ? G HOH . ? A HOH 22 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 24 ? 1_555 55.9 ? 21 O ? G HOH . ? A HOH 23 ? 1_555 NA ? E NA . ? A NA 16 ? 1_555 O ? G HOH . ? A HOH 24 ? 1_555 100.1 ? 22 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? G HOH . ? A HOH 17 ? 1_555 96.4 ? 23 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? G HOH . ? A HOH 18 ? 1_555 76.6 ? 24 O ? G HOH . ? A HOH 17 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? G HOH . ? A HOH 18 ? 1_555 66.9 ? 25 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? G HOH . ? A HOH 20 ? 1_555 135.1 ? 26 O ? G HOH . ? A HOH 17 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? G HOH . ? A HOH 20 ? 1_555 123.7 ? 27 O ? G HOH . ? A HOH 18 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? G HOH . ? A HOH 20 ? 1_555 99.7 ? 28 OP1 ? A DC 5 ? A DC 5 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? G HOH . ? A HOH 21 ? 1_555 55.3 ? 29 O ? G HOH . ? A HOH 17 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? G HOH . ? A HOH 21 ? 1_555 146.1 ? 30 O ? G HOH . ? A HOH 18 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? G HOH . ? A HOH 21 ? 1_555 86.7 ? 31 O ? G HOH . ? A HOH 20 ? 1_555 NA ? D NA . ? A NA 15 ? 1_555 O ? G HOH . ? A HOH 21 ? 1_555 79.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SPM 13 ? 16 'BINDING SITE FOR RESIDUE SPM A 13' AC2 Software B SPM 14 ? 15 'BINDING SITE FOR RESIDUE SPM B 14' AC3 Software A NA 15 ? 7 'BINDING SITE FOR RESIDUE NA A 15' AC4 Software A NA 16 ? 6 'BINDING SITE FOR RESIDUE NA A 16' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 DG A 2 ? DG A 2 . ? 1_555 ? 2 AC1 16 DG A 2 ? DG A 2 . ? 4_556 ? 3 AC1 16 DC A 3 ? DC A 3 . ? 1_555 ? 4 AC1 16 DG A 4 ? DG A 4 . ? 1_555 ? 5 AC1 16 NA D . ? NA A 15 . ? 4_566 ? 6 AC1 16 HOH G . ? HOH A 17 . ? 4_566 ? 7 AC1 16 HOH G . ? HOH A 19 . ? 4_566 ? 8 AC1 16 HOH G . ? HOH A 36 . ? 4_556 ? 9 AC1 16 HOH G . ? HOH A 37 . ? 1_555 ? 10 AC1 16 DG B 2 ? DG B 8 . ? 1_555 ? 11 AC1 16 DC B 3 ? DC B 9 . ? 4_556 ? 12 AC1 16 DC B 3 ? DC B 9 . ? 1_555 ? 13 AC1 16 DG B 4 ? DG B 10 . ? 4_556 ? 14 AC1 16 DG B 4 ? DG B 10 . ? 1_655 ? 15 AC1 16 DC B 5 ? DC B 11 . ? 1_655 ? 16 AC1 16 DG B 6 ? DG B 12 . ? 1_655 ? 17 AC2 15 DC A 1 ? DC A 1 . ? 2_664 ? 18 AC2 15 DG A 2 ? DG A 2 . ? 2_664 ? 19 AC2 15 DC A 5 ? DC A 5 . ? 1_555 ? 20 AC2 15 DG A 6 ? DG A 6 . ? 1_555 ? 21 AC2 15 HOH G . ? HOH A 18 . ? 4_466 ? 22 AC2 15 HOH G . ? HOH A 27 . ? 1_555 ? 23 AC2 15 HOH G . ? HOH A 32 . ? 2_664 ? 24 AC2 15 HOH G . ? HOH A 65 . ? 1_555 ? 25 AC2 15 DC B 1 ? DC B 7 . ? 1_555 ? 26 AC2 15 DG B 2 ? DG B 8 . ? 1_555 ? 27 AC2 15 DC B 3 ? DC B 9 . ? 1_555 ? 28 AC2 15 DG B 4 ? DG B 10 . ? 1_555 ? 29 AC2 15 HOH H . ? HOH B 34 . ? 1_555 ? 30 AC2 15 HOH H . ? HOH B 51 . ? 1_555 ? 31 AC2 15 HOH H . ? HOH B 78 . ? 1_555 ? 32 AC3 7 DC A 5 ? DC A 5 . ? 1_555 ? 33 AC3 7 SPM C . ? SPM A 13 . ? 4_466 ? 34 AC3 7 HOH G . ? HOH A 17 . ? 1_555 ? 35 AC3 7 HOH G . ? HOH A 18 . ? 1_555 ? 36 AC3 7 HOH G . ? HOH A 19 . ? 1_555 ? 37 AC3 7 HOH G . ? HOH A 20 . ? 1_555 ? 38 AC3 7 HOH G . ? HOH A 21 . ? 1_555 ? 39 AC4 6 DG A 4 ? DG A 4 . ? 1_555 ? 40 AC4 6 DC A 5 ? DC A 5 . ? 1_555 ? 41 AC4 6 HOH G . ? HOH A 18 . ? 1_555 ? 42 AC4 6 HOH G . ? HOH A 22 . ? 1_555 ? 43 AC4 6 HOH G . ? HOH A 23 . ? 1_555 ? 44 AC4 6 HOH G . ? HOH A 24 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 46 ? ? 1_555 O B HOH 77 ? ? 3_755 2.12 2 1 O A HOH 69 ? ? 1_555 O A HOH 73 ? ? 3_746 2.13 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.595 1.519 0.076 0.010 N 2 1 N1 A DC 1 ? ? C6 A DC 1 ? ? 1.418 1.367 0.051 0.006 N 3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? 1.413 1.335 0.078 0.007 N 4 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.351 1.388 -0.037 0.006 N 5 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.271 1.341 -0.070 0.010 N 6 1 C4 A DC 3 ? ? N4 A DC 3 ? ? 1.408 1.335 0.073 0.009 N 7 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 1.433 1.516 -0.083 0.008 N 8 1 C6 A DG 4 ? ? N1 A DG 4 ? ? 1.310 1.391 -0.081 0.007 N 9 1 N7 A DG 4 ? ? C8 A DG 4 ? ? 1.347 1.305 0.042 0.006 N 10 1 C2 A DG 4 ? ? N2 A DG 4 ? ? 1.251 1.341 -0.090 0.010 N 11 1 "O3'" A DG 4 ? ? P A DC 5 ? ? 1.522 1.607 -0.085 0.012 Y 12 1 "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 1.570 1.512 0.058 0.007 N 13 1 P A DG 6 ? ? OP2 A DG 6 ? ? 1.373 1.485 -0.112 0.017 N 14 1 "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 1.585 1.512 0.073 0.007 N 15 1 C6 A DG 6 ? ? N1 A DG 6 ? ? 1.348 1.391 -0.043 0.007 N 16 1 C8 A DG 6 ? ? N9 A DG 6 ? ? 1.300 1.374 -0.074 0.007 N 17 1 "C5'" B DC 7 ? ? "C4'" B DC 7 ? ? 1.561 1.512 0.049 0.007 N 18 1 "O3'" B DC 7 ? ? "C3'" B DC 7 ? ? 1.352 1.419 -0.067 0.006 N 19 1 "C5'" B DG 8 ? ? "C4'" B DG 8 ? ? 1.566 1.512 0.054 0.007 N 20 1 "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? 1.598 1.529 0.069 0.010 N 21 1 "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? 1.460 1.516 -0.056 0.008 N 22 1 "C2'" B DG 8 ? ? "C1'" B DG 8 ? ? 1.455 1.518 -0.063 0.010 N 23 1 "O3'" B DG 8 ? ? "C3'" B DG 8 ? ? 1.381 1.419 -0.038 0.006 N 24 1 N1 B DG 8 ? ? C2 B DG 8 ? ? 1.308 1.373 -0.065 0.008 N 25 1 C2 B DG 8 ? ? N3 B DG 8 ? ? 1.397 1.323 0.074 0.008 N 26 1 C6 B DG 8 ? ? N1 B DG 8 ? ? 1.320 1.391 -0.071 0.007 N 27 1 C8 B DG 8 ? ? N9 B DG 8 ? ? 1.312 1.374 -0.062 0.007 N 28 1 C2 B DG 8 ? ? N2 B DG 8 ? ? 1.251 1.341 -0.090 0.010 N 29 1 "O3'" B DG 8 ? ? P B DC 9 ? ? 1.532 1.607 -0.075 0.012 Y 30 1 "C5'" B DC 9 ? ? "C4'" B DC 9 ? ? 1.604 1.512 0.092 0.007 N 31 1 "C2'" B DC 9 ? ? "C1'" B DC 9 ? ? 1.618 1.519 0.099 0.010 N 32 1 N1 B DC 11 ? ? C2 B DC 11 ? ? 1.334 1.397 -0.063 0.010 N 33 1 C6 B DG 12 ? ? N1 B DG 12 ? ? 1.339 1.391 -0.052 0.007 N 34 1 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.260 1.341 -0.081 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 118.39 121.90 -3.51 0.40 N 2 1 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 125.42 120.20 5.22 0.70 N 3 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 118.80 125.10 -6.30 0.60 N 4 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 128.07 123.90 4.17 0.60 N 5 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 117.72 111.50 6.22 0.50 N 6 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 115.74 119.90 -4.16 0.60 N 7 1 C6 A DC 3 ? ? N1 A DC 3 ? ? C2 A DC 3 ? ? 124.64 120.30 4.34 0.40 N 8 1 N1 A DC 3 ? ? C2 A DC 3 ? ? N3 A DC 3 ? ? 113.42 119.20 -5.78 0.70 N 9 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 124.24 119.90 4.34 0.50 N 10 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 124.42 118.90 5.52 0.60 N 11 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 115.74 111.50 4.24 0.50 N 12 1 C4 A DG 4 ? ? C5 A DG 4 ? ? N7 A DG 4 ? ? 115.26 110.80 4.46 0.40 N 13 1 N9 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 102.49 105.40 -2.91 0.40 N 14 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 122.95 128.60 -5.65 0.60 N 15 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 101.91 108.00 -6.09 0.70 N 16 1 N1 A DC 5 ? ? C2 A DC 5 ? ? N3 A DC 5 ? ? 114.76 119.20 -4.44 0.70 N 17 1 C2 A DC 5 ? ? N3 A DC 5 ? ? C4 A DC 5 ? ? 126.18 119.90 6.28 0.50 N 18 1 N3 A DC 5 ? ? C4 A DC 5 ? ? C5 A DC 5 ? ? 117.39 121.90 -4.51 0.40 N 19 1 C5 A DC 5 ? ? C6 A DC 5 ? ? N1 A DC 5 ? ? 125.50 121.00 4.50 0.50 N 20 1 "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 102.65 109.40 -6.75 0.80 N 21 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 121.14 125.10 -3.96 0.60 N 22 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N3 A DG 6 ? ? 127.83 123.90 3.93 0.60 N 23 1 C2 A DG 6 ? ? N3 A DG 6 ? ? C4 A DG 6 ? ? 108.86 111.90 -3.04 0.50 N 24 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 114.71 111.50 3.21 0.50 N 25 1 C4 A DG 6 ? ? C5 A DG 6 ? ? N7 A DG 6 ? ? 114.62 110.80 3.82 0.40 N 26 1 C5 A DG 6 ? ? N7 A DG 6 ? ? C8 A DG 6 ? ? 98.10 104.30 -6.20 0.50 N 27 1 N7 A DG 6 ? ? C8 A DG 6 ? ? N9 A DG 6 ? ? 118.20 113.10 5.10 0.50 N 28 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 114.44 119.90 -5.46 0.70 N 29 1 "O5'" B DC 7 ? ? "C5'" B DC 7 ? ? "C4'" B DC 7 ? ? 103.39 109.40 -6.01 0.80 N 30 1 "C3'" B DC 7 ? ? "C2'" B DC 7 ? ? "C1'" B DC 7 ? ? 97.16 102.40 -5.24 0.80 N 31 1 C6 B DC 7 ? ? N1 B DC 7 ? ? C2 B DC 7 ? ? 122.94 120.30 2.64 0.40 N 32 1 N1 B DC 7 ? ? C2 B DC 7 ? ? N3 B DC 7 ? ? 114.95 119.20 -4.25 0.70 N 33 1 C2 B DC 7 ? ? N3 B DC 7 ? ? C4 B DC 7 ? ? 123.45 119.90 3.55 0.50 N 34 1 N1 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 122.83 118.90 3.93 0.60 N 35 1 C2 B DG 8 ? ? N3 B DG 8 ? ? C4 B DG 8 ? ? 108.66 111.90 -3.24 0.50 N 36 1 C5 B DG 8 ? ? C6 B DG 8 ? ? N1 B DG 8 ? ? 115.07 111.50 3.57 0.50 N 37 1 C4 B DG 8 ? ? C5 B DG 8 ? ? N7 B DG 8 ? ? 114.90 110.80 4.10 0.40 N 38 1 C5 B DG 8 ? ? N7 B DG 8 ? ? C8 B DG 8 ? ? 99.72 104.30 -4.58 0.50 N 39 1 N7 B DG 8 ? ? C8 B DG 8 ? ? N9 B DG 8 ? ? 116.27 113.10 3.17 0.50 N 40 1 N9 B DG 8 ? ? C4 B DG 8 ? ? C5 B DG 8 ? ? 102.08 105.40 -3.32 0.40 N 41 1 N1 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 122.23 116.20 6.03 0.90 N 42 1 N3 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 112.03 119.90 -7.87 0.70 N 43 1 N1 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 124.38 119.90 4.48 0.60 N 44 1 C5 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 120.36 128.60 -8.24 0.60 N 45 1 "C3'" B DG 8 ? ? "O3'" B DG 8 ? ? P B DC 9 ? ? 128.16 119.70 8.46 1.20 Y 46 1 C2 B DC 9 ? ? N3 B DC 9 ? ? C4 B DC 9 ? ? 124.73 119.90 4.83 0.50 N 47 1 N3 B DC 9 ? ? C4 B DC 9 ? ? C5 B DC 9 ? ? 117.46 121.90 -4.44 0.40 N 48 1 C2 B DG 10 ? ? N3 B DG 10 ? ? C4 B DG 10 ? ? 108.84 111.90 -3.06 0.50 N 49 1 C5 B DG 10 ? ? C6 B DG 10 ? ? N1 B DG 10 ? ? 114.62 111.50 3.12 0.50 N 50 1 C5 B DG 10 ? ? N7 B DG 10 ? ? C8 B DG 10 ? ? 101.07 104.30 -3.23 0.50 N 51 1 N7 B DG 10 ? ? C8 B DG 10 ? ? N9 B DG 10 ? ? 116.39 113.10 3.29 0.50 N 52 1 N3 B DG 10 ? ? C2 B DG 10 ? ? N2 B DG 10 ? ? 113.03 119.90 -6.87 0.70 N 53 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 123.63 118.90 4.73 0.60 N 54 1 C6 B DG 12 ? ? N1 B DG 12 ? ? C2 B DG 12 ? ? 118.82 125.10 -6.28 0.60 N 55 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 118.30 111.50 6.80 0.50 N 56 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 123.18 128.60 -5.42 0.60 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL IONS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL IONS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 NA NA NA N N 75 SPM N1 N N N 76 SPM C2 C N N 77 SPM C3 C N N 78 SPM C4 C N N 79 SPM N5 N N N 80 SPM C6 C N N 81 SPM C7 C N N 82 SPM C8 C N N 83 SPM C9 C N N 84 SPM N10 N N N 85 SPM C11 C N N 86 SPM C12 C N N 87 SPM C13 C N N 88 SPM N14 N N N 89 SPM HN11 H N N 90 SPM HN12 H N N 91 SPM H21 H N N 92 SPM H22 H N N 93 SPM H31 H N N 94 SPM H32 H N N 95 SPM H41 H N N 96 SPM H42 H N N 97 SPM HN5 H N N 98 SPM H61 H N N 99 SPM H62 H N N 100 SPM H71 H N N 101 SPM H72 H N N 102 SPM H81 H N N 103 SPM H82 H N N 104 SPM H91 H N N 105 SPM H92 H N N 106 SPM HN0 H N N 107 SPM H111 H N N 108 SPM H112 H N N 109 SPM H121 H N N 110 SPM H122 H N N 111 SPM H131 H N N 112 SPM H132 H N N 113 SPM HN41 H N N 114 SPM HN42 H N N 115 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 SPM N1 C2 sing N N 77 SPM N1 HN11 sing N N 78 SPM N1 HN12 sing N N 79 SPM C2 C3 sing N N 80 SPM C2 H21 sing N N 81 SPM C2 H22 sing N N 82 SPM C3 C4 sing N N 83 SPM C3 H31 sing N N 84 SPM C3 H32 sing N N 85 SPM C4 N5 sing N N 86 SPM C4 H41 sing N N 87 SPM C4 H42 sing N N 88 SPM N5 C6 sing N N 89 SPM N5 HN5 sing N N 90 SPM C6 C7 sing N N 91 SPM C6 H61 sing N N 92 SPM C6 H62 sing N N 93 SPM C7 C8 sing N N 94 SPM C7 H71 sing N N 95 SPM C7 H72 sing N N 96 SPM C8 C9 sing N N 97 SPM C8 H81 sing N N 98 SPM C8 H82 sing N N 99 SPM C9 N10 sing N N 100 SPM C9 H91 sing N N 101 SPM C9 H92 sing N N 102 SPM N10 C11 sing N N 103 SPM N10 HN0 sing N N 104 SPM C11 C12 sing N N 105 SPM C11 H111 sing N N 106 SPM C11 H112 sing N N 107 SPM C12 C13 sing N N 108 SPM C12 H121 sing N N 109 SPM C12 H122 sing N N 110 SPM C13 N14 sing N N 111 SPM C13 H131 sing N N 112 SPM C13 H132 sing N N 113 SPM N14 HN41 sing N N 114 SPM N14 HN42 sing N N 115 # _ndb_struct_conf_na.entry_id 131D _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -0.205 -0.143 0.074 1.469 -1.935 2.981 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 5 1_555 0.260 -0.155 0.083 -3.397 2.759 2.149 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 -0.298 -0.145 0.043 2.241 6.197 1.332 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.303 -0.197 0.020 -5.393 4.600 2.912 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 -0.208 -0.225 0.008 4.753 -6.535 1.844 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 0.242 -0.165 0.094 -4.004 3.283 1.675 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 0.260 5.420 3.525 1.786 -2.544 -10.128 -23.951 5.201 4.626 13.987 9.815 -10.593 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 0.611 -0.318 3.235 0.929 -5.813 -53.830 0.700 0.728 3.178 6.399 1.023 -54.127 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.384 5.500 3.612 -1.660 1.478 -7.874 -42.426 -7.043 2.407 -10.489 -11.781 -8.181 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 -0.676 -1.071 3.267 0.872 -0.646 -50.547 1.299 -0.730 3.265 0.756 1.021 -50.558 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 0.047 5.475 3.721 2.283 -0.127 -7.555 -39.334 8.227 3.637 0.934 16.824 -7.893 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 131D _atom_sites.fract_transf_matrix[1][1] 0.054750 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032584 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023552 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P # loop_