HEADER DNA 18-JUN-93 131D TITLE THE LOW-TEMPERATURE CRYSTAL STRUCTURE OF THE PURE-SPERMINE FORM OF Z- TITLE 2 DNA REVEALS BINDING OF A SPERMINE MOLECULE IN THE MINOR GROOVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS Z-DNA, DOUBLE HELIX, DNA EXPDTA X-RAY DIFFRACTION AUTHOR D.BANCROFT,L.D.WILLIAMS,A.RICH,M.EGLI REVDAT 3 07-FEB-24 131D 1 REMARK LINK REVDAT 2 24-FEB-09 131D 1 VERSN REVDAT 1 15-OCT-93 131D 0 JRNL AUTH D.BANCROFT,L.D.WILLIAMS,A.RICH,M.EGLI JRNL TITL THE LOW-TEMPERATURE CRYSTAL STRUCTURE OF THE PURE-SPERMINE JRNL TITL 2 FORM OF Z-DNA REVEALS BINDING OF A SPERMINE MOLECULE IN THE JRNL TITL 3 MINOR GROOVE. JRNL REF BIOCHEMISTRY V. 33 1073 1994 JRNL REFN ISSN 0006-2960 JRNL PMID 8110738 JRNL DOI 10.1021/BI00171A005 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.EGLI,L.D.WILLIAMS,Q.GAO,A.RICH REMARK 1 TITL STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA (MAGNESIUM REMARK 1 TITL 2 FREE) AT 1 ANGSTROM RESOLUTION REMARK 1 REF BIOCHEMISTRY V. 30 11388 1991 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ (MODIFIED BY G.J.QUIGLEY) REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 5.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 9575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 240 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.030 ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 131D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000170075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 163.00 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : RIGAKU AFC-5R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9691 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 25.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.00, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 9.13250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.23000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.34500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 21.23000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 9.13250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 15.34500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 46 O HOH B 77 3755 2.12 REMARK 500 O HOH A 69 O HOH A 73 3746 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 1 C2' DC A 1 C1' 0.076 REMARK 500 DC A 1 N1 DC A 1 C6 0.051 REMARK 500 DC A 1 N3 DC A 1 C4 0.078 REMARK 500 DG A 2 C5 DG A 2 N7 -0.037 REMARK 500 DG A 2 C2 DG A 2 N2 -0.070 REMARK 500 DC A 3 C4 DC A 3 N4 0.073 REMARK 500 DG A 4 C3' DG A 4 C2' -0.083 REMARK 500 DG A 4 C6 DG A 4 N1 -0.081 REMARK 500 DG A 4 N7 DG A 4 C8 0.042 REMARK 500 DG A 4 C2 DG A 4 N2 -0.090 REMARK 500 DG A 4 O3' DC A 5 P -0.085 REMARK 500 DC A 5 C5' DC A 5 C4' 0.058 REMARK 500 DG A 6 P DG A 6 OP2 -0.112 REMARK 500 DG A 6 C5' DG A 6 C4' 0.073 REMARK 500 DG A 6 C6 DG A 6 N1 -0.043 REMARK 500 DG A 6 C8 DG A 6 N9 -0.074 REMARK 500 DC B 7 C5' DC B 7 C4' 0.049 REMARK 500 DC B 7 O3' DC B 7 C3' -0.067 REMARK 500 DG B 8 C5' DG B 8 C4' 0.054 REMARK 500 DG B 8 C4' DG B 8 C3' 0.069 REMARK 500 DG B 8 C3' DG B 8 C2' -0.056 REMARK 500 DG B 8 C2' DG B 8 C1' -0.063 REMARK 500 DG B 8 O3' DG B 8 C3' -0.038 REMARK 500 DG B 8 N1 DG B 8 C2 -0.065 REMARK 500 DG B 8 C2 DG B 8 N3 0.074 REMARK 500 DG B 8 C6 DG B 8 N1 -0.071 REMARK 500 DG B 8 C8 DG B 8 N9 -0.062 REMARK 500 DG B 8 C2 DG B 8 N2 -0.090 REMARK 500 DG B 8 O3' DC B 9 P -0.075 REMARK 500 DC B 9 C5' DC B 9 C4' 0.092 REMARK 500 DC B 9 C2' DC B 9 C1' 0.099 REMARK 500 DC B 11 N1 DC B 11 C2 -0.063 REMARK 500 DG B 12 C6 DG B 12 N1 -0.052 REMARK 500 DG B 12 C2 DG B 12 N2 -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 N3 - C4 - C5 ANGL. DEV. = -3.5 DEGREES REMARK 500 DC A 1 C5 - C4 - N4 ANGL. DEV. = 5.2 DEGREES REMARK 500 DG A 2 C6 - N1 - C2 ANGL. DEV. = -6.3 DEGREES REMARK 500 DG A 2 N1 - C2 - N3 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG A 2 C5 - C6 - N1 ANGL. DEV. = 6.2 DEGREES REMARK 500 DG A 2 N1 - C6 - O6 ANGL. DEV. = -4.2 DEGREES REMARK 500 DC A 3 C6 - N1 - C2 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC A 3 N1 - C2 - N3 ANGL. DEV. = -5.8 DEGREES REMARK 500 DC A 3 C2 - N3 - C4 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC A 3 N1 - C2 - O2 ANGL. DEV. = 5.5 DEGREES REMARK 500 DG A 4 C5 - C6 - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG A 4 C4 - C5 - N7 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG A 4 N9 - C4 - C5 ANGL. DEV. = -2.9 DEGREES REMARK 500 DG A 4 C5 - C6 - O6 ANGL. DEV. = -5.7 DEGREES REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = -6.1 DEGREES REMARK 500 DC A 5 N1 - C2 - N3 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC A 5 C2 - N3 - C4 ANGL. DEV. = 6.3 DEGREES REMARK 500 DC A 5 N3 - C4 - C5 ANGL. DEV. = -4.5 DEGREES REMARK 500 DC A 5 C5 - C6 - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG A 6 O5' - C5' - C4' ANGL. DEV. = -6.8 DEGREES REMARK 500 DG A 6 C6 - N1 - C2 ANGL. DEV. = -4.0 DEGREES REMARK 500 DG A 6 N1 - C2 - N3 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG A 6 C2 - N3 - C4 ANGL. DEV. = -3.0 DEGREES REMARK 500 DG A 6 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG A 6 C4 - C5 - N7 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG A 6 C5 - N7 - C8 ANGL. DEV. = -6.2 DEGREES REMARK 500 DG A 6 N7 - C8 - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 DG A 6 N3 - C2 - N2 ANGL. DEV. = -5.5 DEGREES REMARK 500 DC B 7 O5' - C5' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DC B 7 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DC B 7 C6 - N1 - C2 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC B 7 N1 - C2 - N3 ANGL. DEV. = -4.2 DEGREES REMARK 500 DC B 7 C2 - N3 - C4 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC B 7 N1 - C2 - O2 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG B 8 C2 - N3 - C4 ANGL. DEV. = -3.2 DEGREES REMARK 500 DG B 8 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG B 8 C4 - C5 - N7 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG B 8 C5 - N7 - C8 ANGL. DEV. = -4.6 DEGREES REMARK 500 DG B 8 N7 - C8 - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG B 8 N9 - C4 - C5 ANGL. DEV. = -3.3 DEGREES REMARK 500 DG B 8 N1 - C2 - N2 ANGL. DEV. = 6.0 DEGREES REMARK 500 DG B 8 N3 - C2 - N2 ANGL. DEV. = -7.9 DEGREES REMARK 500 DG B 8 N1 - C6 - O6 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG B 8 C5 - C6 - O6 ANGL. DEV. = -8.2 DEGREES REMARK 500 DG B 8 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 DC B 9 C2 - N3 - C4 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC B 9 N3 - C4 - C5 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG B 10 C2 - N3 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 DG B 10 C5 - C6 - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG B 10 C5 - N7 - C8 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 56 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 16 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 4 O3' REMARK 620 2 DC A 5 OP1 49.3 REMARK 620 3 DC A 5 OP2 50.7 49.5 REMARK 620 4 HOH A 18 O 84.0 70.9 119.3 REMARK 620 5 HOH A 22 O 162.0 136.3 116.6 113.9 REMARK 620 6 HOH A 23 O 105.7 147.8 135.8 88.5 74.3 REMARK 620 7 HOH A 24 O 107.2 106.5 63.5 163.1 55.9 100.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 15 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 5 OP1 REMARK 620 2 HOH A 17 O 96.4 REMARK 620 3 HOH A 18 O 76.6 66.9 REMARK 620 4 HOH A 20 O 135.1 123.7 99.7 REMARK 620 5 HOH A 21 O 55.3 146.1 86.7 79.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM A 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM B 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 16 DBREF 131D A 1 6 PDB 131D 131D 1 6 DBREF 131D B 7 12 PDB 131D 131D 7 12 SEQRES 1 A 6 DC DG DC DG DC DG SEQRES 1 B 6 DC DG DC DG DC DG HET SPM A 13 14 HET NA A 15 1 HET NA A 16 1 HET SPM B 14 14 HETNAM SPM SPERMINE HETNAM NA SODIUM ION FORMUL 3 SPM 2(C10 H26 N4) FORMUL 4 NA 2(NA 1+) FORMUL 7 HOH *62(H2 O) LINK O3' DG A 4 NA NA A 16 1555 1555 2.84 LINK OP1 DC A 5 NA NA A 15 1555 1555 2.66 LINK OP1 DC A 5 NA NA A 16 1555 1555 2.98 LINK OP2 DC A 5 NA NA A 16 1555 1555 2.80 LINK NA NA A 15 O HOH A 17 1555 1555 2.92 LINK NA NA A 15 O HOH A 18 1555 1555 2.76 LINK NA NA A 15 O HOH A 20 1555 1555 2.98 LINK NA NA A 15 O HOH A 21 1555 1555 2.90 LINK NA NA A 16 O HOH A 18 1555 1555 2.79 LINK NA NA A 16 O HOH A 22 1555 1555 2.81 LINK NA NA A 16 O HOH A 23 1555 1555 2.61 LINK NA NA A 16 O HOH A 24 1555 1555 2.75 SITE 1 AC1 13 DG A 2 DC A 3 DG A 4 NA A 15 SITE 2 AC1 13 HOH A 17 HOH A 19 HOH A 36 HOH A 37 SITE 3 AC1 13 DG B 8 DC B 9 DG B 10 DC B 11 SITE 4 AC1 13 DG B 12 SITE 1 AC2 15 DC A 1 DG A 2 DC A 5 DG A 6 SITE 2 AC2 15 HOH A 18 HOH A 27 HOH A 32 HOH A 65 SITE 3 AC2 15 DC B 7 DG B 8 DC B 9 DG B 10 SITE 4 AC2 15 HOH B 34 HOH B 51 HOH B 78 SITE 1 AC3 7 DC A 5 SPM A 13 HOH A 17 HOH A 18 SITE 2 AC3 7 HOH A 19 HOH A 20 HOH A 21 SITE 1 AC4 6 DG A 4 DC A 5 HOH A 18 HOH A 22 SITE 2 AC4 6 HOH A 23 HOH A 24 CRYST1 18.265 30.690 42.460 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.054750 0.000000 0.000000 0.00000 SCALE2 0.000000 0.032584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023552 0.00000