HEADER LIGASE 10-OCT-25 13SI TITLE PANDDA ANALYSIS GROUP DEPOSITION -- IDOL RING DOMAIN IN COMPLEX WITH TITLE 2 Z2574937229 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE MYLIP; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: INDUCIBLE DEGRADER OF THE LDL-RECEPTOR,IDOL,MYOSIN COMPND 5 REGULATORY LIGHT CHAIN INTERACTING PROTEIN,MIR,RING-TYPE E3 UBIQUITIN COMPND 6 TRANSFERASE MYLIP; COMPND 7 EC: 2.3.2.27; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYLIP, BZF1, IDOL, BM-023, PP5242; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIAMOND I04-1 FRAGMENT SCREENING, PANDDA, XCHEMEXPLORER, E3, KEYWDS 2 UBIQUITIN, ZINC FINGER, RING, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR W.J.BRADSHAW,F.GUENTHER,E.J.MURPHY REVDAT 1 10-DEC-25 13SI 0 JRNL AUTH W.J.BRADSHAW,F.GUENTHER,E.J.MURPHY JRNL TITL PANDDA ANALYSIS GROUP DEPOSITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 (23-JAN-2024) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2195 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 51 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.11 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 892 REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 833 REMARK 3 BIN R VALUE (WORKING SET) : 0.3335 REMARK 3 BIN FREE R VALUE : 0.3779 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.61 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 59 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2187 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.50620 REMARK 3 B22 (A**2) : 2.44750 REMARK 3 B33 (A**2) : -7.95370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.97270 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.200 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.083 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.083 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.078 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.080 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2487 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3393 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 951 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 450 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2487 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 332 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2188 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.60 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.07 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -24.3142 9.0462 15.3695 REMARK 3 T TENSOR REMARK 3 T11: 0.0286 T22: 0.0094 REMARK 3 T33: -0.0306 T12: 0.0140 REMARK 3 T13: 0.0072 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 0.0638 L22: 0.1809 REMARK 3 L33: 0.6783 L12: 0.0422 REMARK 3 L13: -0.2131 L23: -0.2590 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: 0.0654 S13: 0.0716 REMARK 3 S21: 0.0502 S22: -0.0044 S23: 0.0212 REMARK 3 S31: -0.0262 S32: -0.0612 S33: -0.0036 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -9.5292 13.1322 15.5730 REMARK 3 T TENSOR REMARK 3 T11: 0.0369 T22: 0.0018 REMARK 3 T33: -0.0392 T12: -0.0046 REMARK 3 T13: 0.0129 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.2074 L22: 0.0766 REMARK 3 L33: 0.6160 L12: -0.1499 REMARK 3 L13: 0.2758 L23: -0.3661 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: 0.0833 S13: 0.1051 REMARK 3 S21: 0.0240 S22: -0.0072 S23: -0.0139 REMARK 3 S31: 0.0378 S32: 0.0126 S33: -0.0028 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 1.8094 -7.8553 17.2551 REMARK 3 T TENSOR REMARK 3 T11: 0.0229 T22: 0.0062 REMARK 3 T33: -0.0323 T12: -0.0127 REMARK 3 T13: 0.0151 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.1339 L22: 0.2075 REMARK 3 L33: 0.5616 L12: -0.3109 REMARK 3 L13: 0.2354 L23: 0.0106 REMARK 3 S TENSOR REMARK 3 S11: -0.0366 S12: 0.0711 S13: -0.0471 REMARK 3 S21: 0.0609 S22: 0.0327 S23: -0.0142 REMARK 3 S31: 0.0517 S32: 0.0296 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -12.8322 -12.5353 17.3414 REMARK 3 T TENSOR REMARK 3 T11: 0.0370 T22: -0.0048 REMARK 3 T33: -0.0376 T12: -0.0013 REMARK 3 T13: 0.0058 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.3950 L22: 0.0000 REMARK 3 L33: 0.5693 L12: -0.0891 REMARK 3 L13: -0.3181 L23: -0.0759 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: 0.0712 S13: -0.1284 REMARK 3 S21: 0.0300 S22: -0.0395 S23: 0.0320 REMARK 3 S31: 0.0026 S32: -0.0418 S33: 0.0691 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 13SI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1001409341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.92205 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44587 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 70.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.25200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 4.98200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 9SA2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM ACETATE, 100 MM TRIS, REMARK 280 30% W/V PEG 4000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.01300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 443 REMARK 465 VAL A 444 REMARK 465 ILE A 445 REMARK 465 HIS B 436 REMARK 465 THR B 437 REMARK 465 SER B 438 REMARK 465 LEU B 439 REMARK 465 LEU B 440 REMARK 465 ASN B 441 REMARK 465 LEU B 442 REMARK 465 THR B 443 REMARK 465 VAL B 444 REMARK 465 ILE B 445 REMARK 465 THR C 437 REMARK 465 SER C 438 REMARK 465 LEU C 439 REMARK 465 LEU C 440 REMARK 465 ASN C 441 REMARK 465 LEU C 442 REMARK 465 THR C 443 REMARK 465 VAL C 444 REMARK 465 ILE C 445 REMARK 465 THR D 437 REMARK 465 SER D 438 REMARK 465 LEU D 439 REMARK 465 LEU D 440 REMARK 465 ASN D 441 REMARK 465 LEU D 442 REMARK 465 THR D 443 REMARK 465 VAL D 444 REMARK 465 ILE D 445 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 614 O HOH D 661 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 396 22.97 -151.11 REMARK 500 ASN B 396 19.84 -153.23 REMARK 500 ASN C 396 23.48 -152.79 REMARK 500 ASN D 396 20.56 -152.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 686 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH C 666 DISTANCE = 6.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 387 SG REMARK 620 2 CYS A 390 SG 107.9 REMARK 620 3 CYS A 408 SG 113.5 114.3 REMARK 620 4 CYS A 411 SG 104.2 111.8 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 402 SG REMARK 620 2 HIS A 404 ND1 110.3 REMARK 620 3 CYS A 418 SG 107.5 105.7 REMARK 620 4 CYS A 421 SG 111.4 110.1 111.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 387 SG REMARK 620 2 CYS B 390 SG 107.0 REMARK 620 3 CYS B 408 SG 114.7 112.5 REMARK 620 4 CYS B 411 SG 103.2 111.6 107.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 402 SG REMARK 620 2 HIS B 404 ND1 108.8 REMARK 620 3 CYS B 418 SG 108.7 106.4 REMARK 620 4 CYS B 421 SG 111.2 109.3 112.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 387 SG REMARK 620 2 CYS C 390 SG 107.0 REMARK 620 3 CYS C 408 SG 113.4 114.5 REMARK 620 4 CYS C 411 SG 105.2 113.1 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 402 SG REMARK 620 2 HIS C 404 ND1 110.9 REMARK 620 3 CYS C 418 SG 107.8 106.8 REMARK 620 4 CYS C 421 SG 110.2 109.4 111.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 387 SG REMARK 620 2 CYS D 390 SG 108.1 REMARK 620 3 CYS D 408 SG 115.2 111.3 REMARK 620 4 CYS D 411 SG 104.0 111.1 106.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 402 SG REMARK 620 2 HIS D 404 ND1 108.6 REMARK 620 3 CYS D 418 SG 107.5 107.2 REMARK 620 4 CYS D 421 SG 110.1 111.3 112.0 REMARK 620 N 1 2 3 DBREF 13SI A 369 445 UNP Q8WY64 MYLIP_HUMAN 369 445 DBREF 13SI B 369 445 UNP Q8WY64 MYLIP_HUMAN 369 445 DBREF 13SI C 369 445 UNP Q8WY64 MYLIP_HUMAN 369 445 DBREF 13SI D 369 445 UNP Q8WY64 MYLIP_HUMAN 369 445 SEQADV 13SI SER A 368 UNP Q8WY64 EXPRESSION TAG SEQADV 13SI SER B 368 UNP Q8WY64 EXPRESSION TAG SEQADV 13SI SER C 368 UNP Q8WY64 EXPRESSION TAG SEQADV 13SI SER D 368 UNP Q8WY64 EXPRESSION TAG SEQRES 1 A 78 SER GLN GLN THR ARG VAL LEU GLN GLU LYS LEU ARG LYS SEQRES 2 A 78 LEU LYS GLU ALA MET LEU CYS MET VAL CYS CYS GLU GLU SEQRES 3 A 78 GLU ILE ASN SER THR PHE CYS PRO CYS GLY HIS THR VAL SEQRES 4 A 78 CYS CYS GLU SER CYS ALA ALA GLN LEU GLN SER CYS PRO SEQRES 5 A 78 VAL CYS ARG SER ARG VAL GLU HIS VAL GLN HIS VAL TYR SEQRES 6 A 78 LEU PRO THR HIS THR SER LEU LEU ASN LEU THR VAL ILE SEQRES 1 B 78 SER GLN GLN THR ARG VAL LEU GLN GLU LYS LEU ARG LYS SEQRES 2 B 78 LEU LYS GLU ALA MET LEU CYS MET VAL CYS CYS GLU GLU SEQRES 3 B 78 GLU ILE ASN SER THR PHE CYS PRO CYS GLY HIS THR VAL SEQRES 4 B 78 CYS CYS GLU SER CYS ALA ALA GLN LEU GLN SER CYS PRO SEQRES 5 B 78 VAL CYS ARG SER ARG VAL GLU HIS VAL GLN HIS VAL TYR SEQRES 6 B 78 LEU PRO THR HIS THR SER LEU LEU ASN LEU THR VAL ILE SEQRES 1 C 78 SER GLN GLN THR ARG VAL LEU GLN GLU LYS LEU ARG LYS SEQRES 2 C 78 LEU LYS GLU ALA MET LEU CYS MET VAL CYS CYS GLU GLU SEQRES 3 C 78 GLU ILE ASN SER THR PHE CYS PRO CYS GLY HIS THR VAL SEQRES 4 C 78 CYS CYS GLU SER CYS ALA ALA GLN LEU GLN SER CYS PRO SEQRES 5 C 78 VAL CYS ARG SER ARG VAL GLU HIS VAL GLN HIS VAL TYR SEQRES 6 C 78 LEU PRO THR HIS THR SER LEU LEU ASN LEU THR VAL ILE SEQRES 1 D 78 SER GLN GLN THR ARG VAL LEU GLN GLU LYS LEU ARG LYS SEQRES 2 D 78 LEU LYS GLU ALA MET LEU CYS MET VAL CYS CYS GLU GLU SEQRES 3 D 78 GLU ILE ASN SER THR PHE CYS PRO CYS GLY HIS THR VAL SEQRES 4 D 78 CYS CYS GLU SER CYS ALA ALA GLN LEU GLN SER CYS PRO SEQRES 5 D 78 VAL CYS ARG SER ARG VAL GLU HIS VAL GLN HIS VAL TYR SEQRES 6 D 78 LEU PRO THR HIS THR SER LEU LEU ASN LEU THR VAL ILE HET ZN A 501 1 HET ZN A 502 1 HET WJG A 503 16 HET ZN B 501 1 HET ZN B 502 1 HET WJG B 503 16 HET DMS B 504 4 HET ZN C 501 1 HET ZN C 502 1 HET WJG C 503 16 HET DMS C 504 4 HET ZN D 501 1 HET ZN D 502 1 HET WJG D 503 16 HETNAM ZN ZINC ION HETNAM WJG (S)-1-(4-METHOXYPHENYL)-1-PHENYLMETHANAMINE HETNAM DMS DIMETHYL SULFOXIDE FORMUL 5 ZN 8(ZN 2+) FORMUL 7 WJG 4(C14 H15 N O) FORMUL 11 DMS 2(C2 H6 O S) FORMUL 19 HOH *288(H2 O) HELIX 1 AA1 SER A 368 MET A 385 1 18 HELIX 2 AA2 CYS A 408 LEU A 415 1 8 HELIX 3 AA3 GLN B 369 MET B 385 1 17 HELIX 4 AA4 CYS B 408 GLN B 414 1 7 HELIX 5 AA5 GLN C 369 MET C 385 1 17 HELIX 6 AA6 CYS C 408 GLN C 414 1 7 HELIX 7 AA7 GLN D 369 MET D 385 1 17 HELIX 8 AA8 CYS D 408 GLN D 414 1 7 SHEET 1 AA1 2 SER A 397 CYS A 400 0 SHEET 2 AA1 2 HIS A 427 HIS A 430 -1 O GLN A 429 N THR A 398 SHEET 1 AA2 2 SER B 397 CYS B 400 0 SHEET 2 AA2 2 HIS B 427 HIS B 430 -1 O GLN B 429 N THR B 398 SHEET 1 AA3 2 SER C 397 CYS C 400 0 SHEET 2 AA3 2 HIS C 427 HIS C 430 -1 O GLN C 429 N THR C 398 SHEET 1 AA4 2 SER D 397 CYS D 400 0 SHEET 2 AA4 2 HIS D 427 HIS D 430 -1 O GLN D 429 N THR D 398 LINK SG CYS A 387 ZN ZN A 502 1555 1555 2.40 LINK SG CYS A 390 ZN ZN A 502 1555 1555 2.38 LINK SG CYS A 402 ZN ZN A 501 1555 1555 2.39 LINK ND1 HIS A 404 ZN ZN A 501 1555 1555 2.00 LINK SG CYS A 408 ZN ZN A 502 1555 1555 2.38 LINK SG CYS A 411 ZN ZN A 502 1555 1555 2.35 LINK SG CYS A 418 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 421 ZN ZN A 501 1555 1555 2.34 LINK SG CYS B 387 ZN ZN B 502 1555 1555 2.43 LINK SG CYS B 390 ZN ZN B 502 1555 1555 2.32 LINK SG CYS B 402 ZN ZN B 501 1555 1555 2.38 LINK ND1 HIS B 404 ZN ZN B 501 1555 1555 2.02 LINK SG CYS B 408 ZN ZN B 502 1555 1555 2.40 LINK SG CYS B 411 ZN ZN B 502 1555 1555 2.36 LINK SG CYS B 418 ZN ZN B 501 1555 1555 2.37 LINK SG CYS B 421 ZN ZN B 501 1555 1555 2.38 LINK SG CYS C 387 ZN ZN C 502 1555 1555 2.37 LINK SG CYS C 390 ZN ZN C 502 1555 1555 2.39 LINK SG CYS C 402 ZN ZN C 501 1555 1555 2.38 LINK ND1 HIS C 404 ZN ZN C 501 1555 1555 1.99 LINK SG CYS C 408 ZN ZN C 502 1555 1555 2.42 LINK SG CYS C 411 ZN ZN C 502 1555 1555 2.35 LINK SG CYS C 418 ZN ZN C 501 1555 1555 2.37 LINK SG CYS C 421 ZN ZN C 501 1555 1555 2.34 LINK SG CYS D 387 ZN ZN D 502 1555 1555 2.42 LINK SG CYS D 390 ZN ZN D 502 1555 1555 2.31 LINK SG CYS D 402 ZN ZN D 501 1555 1555 2.40 LINK ND1 HIS D 404 ZN ZN D 501 1555 1555 2.00 LINK SG CYS D 408 ZN ZN D 502 1555 1555 2.43 LINK SG CYS D 411 ZN ZN D 502 1555 1555 2.38 LINK SG CYS D 418 ZN ZN D 501 1555 1555 2.35 LINK SG CYS D 421 ZN ZN D 501 1555 1555 2.35 CISPEP 1 CYS A 400 PRO A 401 0 8.87 CISPEP 2 CYS B 400 PRO B 401 0 8.73 CISPEP 3 CYS C 400 PRO C 401 0 7.88 CISPEP 4 CYS D 400 PRO D 401 0 7.08 CRYST1 44.849 48.026 70.560 90.00 90.90 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022297 0.000000 0.000350 0.00000 SCALE2 0.000000 0.020822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014174 0.00000 CONECT 184 2357 CONECT 205 2357 CONECT 297 2356 CONECT 308 2356 CONECT 337 2357 CONECT 364 2357 CONECT 415 2356 CONECT 435 2356 CONECT 794 2375 CONECT 815 2375 CONECT 907 2374 CONECT 918 2374 CONECT 947 2375 CONECT 971 2375 CONECT 1022 2374 CONECT 1042 2374 CONECT 1361 2397 CONECT 1382 2397 CONECT 1474 2396 CONECT 1485 2396 CONECT 1514 2397 CONECT 1541 2397 CONECT 1597 2396 CONECT 1617 2396 CONECT 1955 2419 CONECT 1976 2419 CONECT 2074 2418 CONECT 2085 2418 CONECT 2114 2419 CONECT 2138 2419 CONECT 2195 2418 CONECT 2215 2418 CONECT 2356 297 308 415 435 CONECT 2357 184 205 337 364 CONECT 2358 2359 2361 2372 CONECT 2359 2358 2360 CONECT 2360 2359 2368 CONECT 2361 2358 2362 2365 CONECT 2362 2361 2364 2373 CONECT 2363 2369 2373 CONECT 2364 2362 2370 CONECT 2365 2361 CONECT 2366 2367 CONECT 2367 2366 2368 CONECT 2368 2360 2367 2371 CONECT 2369 2363 2370 CONECT 2370 2364 2369 CONECT 2371 2368 2372 CONECT 2372 2358 2371 CONECT 2373 2362 2363 CONECT 2374 907 918 1022 1042 CONECT 2375 794 815 947 971 CONECT 2376 2377 2379 2390 CONECT 2377 2376 2378 CONECT 2378 2377 2386 CONECT 2379 2376 2380 2383 CONECT 2380 2379 2382 2391 CONECT 2381 2387 2391 CONECT 2382 2380 2388 CONECT 2383 2379 CONECT 2384 2385 CONECT 2385 2384 2386 CONECT 2386 2378 2385 2389 CONECT 2387 2381 2388 CONECT 2388 2382 2387 CONECT 2389 2386 2390 CONECT 2390 2376 2389 CONECT 2391 2380 2381 CONECT 2392 2393 2394 2395 CONECT 2393 2392 CONECT 2394 2392 CONECT 2395 2392 CONECT 2396 1474 1485 1597 1617 CONECT 2397 1361 1382 1514 1541 CONECT 2398 2399 2401 2412 CONECT 2399 2398 2400 CONECT 2400 2399 2408 CONECT 2401 2398 2402 2405 CONECT 2402 2401 2404 2413 CONECT 2403 2409 2413 CONECT 2404 2402 2410 CONECT 2405 2401 CONECT 2406 2407 CONECT 2407 2406 2408 CONECT 2408 2400 2407 2411 CONECT 2409 2403 2410 CONECT 2410 2404 2409 CONECT 2411 2408 2412 CONECT 2412 2398 2411 CONECT 2413 2402 2403 CONECT 2414 2415 2416 2417 CONECT 2415 2414 CONECT 2416 2414 CONECT 2417 2414 CONECT 2418 2074 2085 2195 2215 CONECT 2419 1955 1976 2114 2138 CONECT 2420 2421 2423 2434 CONECT 2421 2420 2422 CONECT 2422 2421 2430 CONECT 2423 2420 2424 2427 CONECT 2424 2423 2426 2435 CONECT 2425 2431 2435 CONECT 2426 2424 2432 CONECT 2427 2423 CONECT 2428 2429 CONECT 2429 2428 2430 CONECT 2430 2422 2429 2433 CONECT 2431 2425 2432 CONECT 2432 2426 2431 CONECT 2433 2430 2434 CONECT 2434 2420 2433 CONECT 2435 2424 2425 MASTER 444 0 14 8 8 0 0 6 2555 4 112 24 END