data_13TU # _entry.id 13TU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.416 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 13TU pdb_000013tu 10.2210/pdb13tu/pdb WWPDB D_1001409379 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-08-26 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.entry_id 13TU _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2025-10-19 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible N _pdbx_database_status.methods_development_category ? # _pdbx_contact_author.id 1 _pdbx_contact_author.name_last Fraser _pdbx_contact_author.name_first James _pdbx_contact_author.name_mi S. _pdbx_contact_author.email jfraser@fraserlab.com _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5080-2859 # loop_ _audit_author.pdbx_ordinal _audit_author.name 1 'San Felipe, C.J.' 2 'Fraser, J.S.' # _citation.id primary _citation.title 'Orf9b homodimer in complex with fragments' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? _citation.country ? _citation.book_publisher ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'San Felipe, C.J.' 1 ? primary 'Fraser, J.S.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ORF9b protein' 10808.636 2 ? ? ? ? 2 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 1 ? ? ? ? 3 non-polymer syn DECANE 142.282 1 ? ? ? ? 4 non-polymer syn '4-{[(2-fluorophenyl)methyl]sulfamoyl}-1H-pyrrole-2-carboxylic acid' 298.290 1 ? ? ? ? 5 water nat water 18.015 38 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ORF9b,Accessory protein 9b,ORF-9b,Protein 9b' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDPKISEMHPALRLVDPQIQLAVTRMENAVGRDQNNVGPKVYPIILRLGSPLSLNMARKTLNSLEDKAFQLTPIAVQMTK LATTEELPDEFVVVTVK ; _entity_poly.pdbx_seq_one_letter_code_can ;MDPKISEMHPALRLVDPQIQLAVTRMENAVGRDQNNVGPKVYPIILRLGSPLSLNMARKTLNSLEDKAFQLTPIAVQMTK LATTEELPDEFVVVTVK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DIMETHYL SULFOXIDE' DMS 3 DECANE D10 4 '4-{[(2-fluorophenyl)methyl]sulfamoyl}-1H-pyrrole-2-carboxylic acid' A1C1I 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 PRO n 1 4 LYS n 1 5 ILE n 1 6 SER n 1 7 GLU n 1 8 MET n 1 9 HIS n 1 10 PRO n 1 11 ALA n 1 12 LEU n 1 13 ARG n 1 14 LEU n 1 15 VAL n 1 16 ASP n 1 17 PRO n 1 18 GLN n 1 19 ILE n 1 20 GLN n 1 21 LEU n 1 22 ALA n 1 23 VAL n 1 24 THR n 1 25 ARG n 1 26 MET n 1 27 GLU n 1 28 ASN n 1 29 ALA n 1 30 VAL n 1 31 GLY n 1 32 ARG n 1 33 ASP n 1 34 GLN n 1 35 ASN n 1 36 ASN n 1 37 VAL n 1 38 GLY n 1 39 PRO n 1 40 LYS n 1 41 VAL n 1 42 TYR n 1 43 PRO n 1 44 ILE n 1 45 ILE n 1 46 LEU n 1 47 ARG n 1 48 LEU n 1 49 GLY n 1 50 SER n 1 51 PRO n 1 52 LEU n 1 53 SER n 1 54 LEU n 1 55 ASN n 1 56 MET n 1 57 ALA n 1 58 ARG n 1 59 LYS n 1 60 THR n 1 61 LEU n 1 62 ASN n 1 63 SER n 1 64 LEU n 1 65 GLU n 1 66 ASP n 1 67 LYS n 1 68 ALA n 1 69 PHE n 1 70 GLN n 1 71 LEU n 1 72 THR n 1 73 PRO n 1 74 ILE n 1 75 ALA n 1 76 VAL n 1 77 GLN n 1 78 MET n 1 79 THR n 1 80 LYS n 1 81 LEU n 1 82 ALA n 1 83 THR n 1 84 THR n 1 85 GLU n 1 86 GLU n 1 87 LEU n 1 88 PRO n 1 89 ASP n 1 90 GLU n 1 91 PHE n 1 92 VAL n 1 93 VAL n 1 94 VAL n 1 95 THR n 1 96 VAL n 1 97 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 97 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 9b _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1C1I non-polymer . '4-{[(2-fluorophenyl)methyl]sulfamoyl}-1H-pyrrole-2-carboxylic acid' ? 'C12 H11 F N2 O4 S' 298.290 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 D10 non-polymer . DECANE ? 'C10 H22' 142.282 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 HIS 9 9 9 HIS HIS A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 MET 26 26 ? ? ? A . n A 1 27 GLU 27 27 ? ? ? A . n A 1 28 ASN 28 28 ? ? ? A . n A 1 29 ALA 29 29 ? ? ? A . n A 1 30 VAL 30 30 ? ? ? A . n A 1 31 GLY 31 31 ? ? ? A . n A 1 32 ARG 32 32 ? ? ? A . n A 1 33 ASP 33 33 ? ? ? A . n A 1 34 GLN 34 34 ? ? ? A . n A 1 35 ASN 35 35 ? ? ? A . n A 1 36 ASN 36 36 ? ? ? A . n A 1 37 VAL 37 37 ? ? ? A . n A 1 38 GLY 38 38 ? ? ? A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 MET 56 56 56 MET MET A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 MET 78 78 78 MET MET A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 PHE 91 91 91 PHE PHE A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 LYS 97 97 97 LYS LYS A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 ASP 2 2 ? ? ? B . n B 1 3 PRO 3 3 ? ? ? B . n B 1 4 LYS 4 4 ? ? ? B . n B 1 5 ILE 5 5 5 ILE ILE B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 GLU 7 7 7 GLU GLU B . n B 1 8 MET 8 8 8 MET MET B . n B 1 9 HIS 9 9 9 HIS HIS B . n B 1 10 PRO 10 10 10 PRO PRO B . n B 1 11 ALA 11 11 11 ALA ALA B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 ARG 13 13 13 ARG ARG B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 ASP 16 16 16 ASP ASP B . n B 1 17 PRO 17 17 17 PRO PRO B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 ILE 19 19 19 ILE ILE B . n B 1 20 GLN 20 20 20 GLN GLN B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 VAL 23 23 23 VAL VAL B . n B 1 24 THR 24 24 24 THR THR B . n B 1 25 ARG 25 25 ? ? ? B . n B 1 26 MET 26 26 ? ? ? B . n B 1 27 GLU 27 27 ? ? ? B . n B 1 28 ASN 28 28 ? ? ? B . n B 1 29 ALA 29 29 ? ? ? B . n B 1 30 VAL 30 30 ? ? ? B . n B 1 31 GLY 31 31 ? ? ? B . n B 1 32 ARG 32 32 ? ? ? B . n B 1 33 ASP 33 33 ? ? ? B . n B 1 34 GLN 34 34 ? ? ? B . n B 1 35 ASN 35 35 ? ? ? B . n B 1 36 ASN 36 36 ? ? ? B . n B 1 37 VAL 37 37 ? ? ? B . n B 1 38 GLY 38 38 ? ? ? B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 LYS 40 40 40 LYS LYS B . n B 1 41 VAL 41 41 41 VAL VAL B . n B 1 42 TYR 42 42 42 TYR TYR B . n B 1 43 PRO 43 43 43 PRO PRO B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 ILE 45 45 45 ILE ILE B . n B 1 46 LEU 46 46 46 LEU LEU B . n B 1 47 ARG 47 47 47 ARG ARG B . n B 1 48 LEU 48 48 48 LEU LEU B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 SER 50 50 50 SER SER B . n B 1 51 PRO 51 51 51 PRO PRO B . n B 1 52 LEU 52 52 52 LEU LEU B . n B 1 53 SER 53 53 53 SER SER B . n B 1 54 LEU 54 54 54 LEU LEU B . n B 1 55 ASN 55 55 55 ASN ASN B . n B 1 56 MET 56 56 56 MET MET B . n B 1 57 ALA 57 57 57 ALA ALA B . n B 1 58 ARG 58 58 58 ARG ARG B . n B 1 59 LYS 59 59 59 LYS LYS B . n B 1 60 THR 60 60 60 THR THR B . n B 1 61 LEU 61 61 61 LEU LEU B . n B 1 62 ASN 62 62 62 ASN ASN B . n B 1 63 SER 63 63 63 SER SER B . n B 1 64 LEU 64 64 64 LEU LEU B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 ASP 66 66 66 ASP ASP B . n B 1 67 LYS 67 67 67 LYS LYS B . n B 1 68 ALA 68 68 68 ALA ALA B . n B 1 69 PHE 69 69 69 PHE PHE B . n B 1 70 GLN 70 70 70 GLN GLN B . n B 1 71 LEU 71 71 71 LEU LEU B . n B 1 72 THR 72 72 72 THR THR B . n B 1 73 PRO 73 73 73 PRO PRO B . n B 1 74 ILE 74 74 74 ILE ILE B . n B 1 75 ALA 75 75 75 ALA ALA B . n B 1 76 VAL 76 76 76 VAL VAL B . n B 1 77 GLN 77 77 77 GLN GLN B . n B 1 78 MET 78 78 78 MET MET B . n B 1 79 THR 79 79 79 THR THR B . n B 1 80 LYS 80 80 80 LYS LYS B . n B 1 81 LEU 81 81 81 LEU LEU B . n B 1 82 ALA 82 82 82 ALA ALA B . n B 1 83 THR 83 83 83 THR THR B . n B 1 84 THR 84 84 84 THR THR B . n B 1 85 GLU 85 85 85 GLU GLU B . n B 1 86 GLU 86 86 86 GLU GLU B . n B 1 87 LEU 87 87 87 LEU LEU B . n B 1 88 PRO 88 88 88 PRO PRO B . n B 1 89 ASP 89 89 89 ASP ASP B . n B 1 90 GLU 90 90 90 GLU GLU B . n B 1 91 PHE 91 91 91 PHE PHE B . n B 1 92 VAL 92 92 92 VAL VAL B . n B 1 93 VAL 93 93 93 VAL VAL B . n B 1 94 VAL 94 94 94 VAL VAL B . n B 1 95 THR 95 95 95 THR THR B . n B 1 96 VAL 96 96 96 VAL VAL B . n B 1 97 LYS 97 97 ? ? ? B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1C1I _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1C1I _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS 1 101 101 DMS DMS A . D 3 D10 1 101 101 D10 Q59 B . E 4 A1C1I 1 102 102 A1C1I LIG B . F 5 HOH 1 201 157 HOH HOH A . F 5 HOH 2 202 30 HOH HOH A . F 5 HOH 3 203 34 HOH HOH A . F 5 HOH 4 204 14 HOH HOH A . F 5 HOH 5 205 116 HOH HOH A . F 5 HOH 6 206 6 HOH HOH A . F 5 HOH 7 207 13 HOH HOH A . F 5 HOH 8 208 3 HOH HOH A . F 5 HOH 9 209 48 HOH HOH A . F 5 HOH 10 210 2 HOH HOH A . F 5 HOH 11 211 9 HOH HOH A . F 5 HOH 12 212 5 HOH HOH A . F 5 HOH 13 213 8 HOH HOH A . F 5 HOH 14 214 1 HOH HOH A . F 5 HOH 15 215 4 HOH HOH A . F 5 HOH 16 216 123 HOH HOH A . F 5 HOH 17 217 89 HOH HOH A . F 5 HOH 18 218 7 HOH HOH A . F 5 HOH 19 219 20 HOH HOH A . F 5 HOH 20 220 12 HOH HOH A . F 5 HOH 21 221 55 HOH HOH A . F 5 HOH 22 222 17 HOH HOH A . F 5 HOH 23 223 114 HOH HOH A . F 5 HOH 24 224 54 HOH HOH A . F 5 HOH 25 225 131 HOH HOH A . F 5 HOH 26 226 23 HOH HOH A . F 5 HOH 27 227 142 HOH HOH A . F 5 HOH 28 228 67 HOH HOH A . F 5 HOH 29 229 133 HOH HOH A . G 5 HOH 1 201 38 HOH HOH B . G 5 HOH 2 202 11 HOH HOH B . G 5 HOH 3 203 29 HOH HOH B . G 5 HOH 4 204 10 HOH HOH B . G 5 HOH 5 205 104 HOH HOH B . G 5 HOH 6 206 18 HOH HOH B . G 5 HOH 7 207 32 HOH HOH B . G 5 HOH 8 208 57 HOH HOH B . G 5 HOH 9 209 53 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.type _software.contact_author _software.contact_author_email _software.location _software.classification _software.language _software.citation_id 1 PHENIX 1.21.1_5286 program 'Paul D. Adams' pdadams@lbl.gov https://www.phenix-online.org/ refinement Python/C++ ? 2 Aimless . ? ? ? ? 'data scaling' ? ? 3 XDS . ? ? ? ? 'data reduction' ? ? 4 PHASER . ? ? ? ? phasing ? ? # _cell.entry_id 13TU _cell.volume 171114.344 _cell.length_a 35.756 _cell.length_b 65.121 _cell.length_c 73.488 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.angle_alpha 90.000 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 13TU _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 13TU _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.84 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '10% PEG3350, 10% PEG1000, 10% MPD, 0.15M Ethylene Glycol, 0.1M MES pH 6.5, 0.1M Imidazole pH 6.5' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp_details ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.pdbx_collection_date 2023-10-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_scattering_type x-ray _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.116 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_wavelength_list 1.116 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? # _reflns.B_iso_Wilson_estimate 35.56 _reflns.entry_id 13TU _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.d_resolution_low 48.74 _reflns.d_resolution_high 1.83 _reflns.number_obs 15681 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.077 _reflns.pdbx_netI_over_sigmaI 10.6 _reflns.pdbx_redundancy 5.3 _reflns.pdbx_Rrim_I_all 0.085 _reflns.pdbx_Rpim_I_all 0.035 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_number_measured_all 83548 _reflns.pdbx_chi_squared 0.83 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.83 _reflns_shell.d_res_low 1.87 _reflns_shell.number_measured_all 4109 _reflns_shell.number_unique_obs 945 _reflns_shell.Rmerge_I_obs 1.646 _reflns_shell.pdbx_chi_squared 0.57 _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.percent_possible_obs 98.4 _reflns_shell.pdbx_netI_over_sigmaI_obs 0.7 _reflns_shell.pdbx_Rrim_I_all 1.862 _reflns_shell.pdbx_Rpim_I_all 0.846 _reflns_shell.pdbx_CC_half 0.260 _reflns_shell.percent_possible_all ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? # _refine.entry_id 13TU _refine.ls_percent_reflns_R_free 7.83 _refine.pdbx_overall_phase_error 27.3422 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_R_factor_obs 0.2206 _refine.B_iso_mean 52.63 _refine.ls_number_reflns_R_free 1224 _refine.ls_percent_reflns_obs 99.52 _refine.ls_R_factor_R_work 0.2178 _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_d_res_high 1.83 _refine.ls_number_reflns_obs 15625 _refine.pdbx_ls_sigma_F 1.36 _refine.ls_number_reflns_R_work 14401 _refine.ls_d_res_low 32.56 _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.ls_R_factor_R_free 0.2534 _refine.overall_SU_ML 0.3180 _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_diffrn_id 1 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_ion_probe_radii ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1265 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 38 _refine_hist.number_atoms_total 1337 _refine_hist.d_res_high 1.83 _refine_hist.d_res_low 32.56 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.dev_ideal_target 'X-RAY DIFFRACTION' f_bond_d 1317 0.0065 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1786 0.8762 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 224 0.0529 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 219 0.0070 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 512 18.3867 ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' 1.83 1.90 1554 0.4098 98.25 0.4726 133 . . . . . 'X-RAY DIFFRACTION' 1.90 1.99 1574 0.3234 99.42 0.3969 134 . . . . . 'X-RAY DIFFRACTION' 1.99 2.10 1574 0.2574 99.59 0.3092 132 . . . . . 'X-RAY DIFFRACTION' 2.10 2.23 1569 0.2194 99.71 0.2718 134 . . . . . 'X-RAY DIFFRACTION' 2.23 2.40 1581 0.2238 99.30 0.2765 133 . . . . . 'X-RAY DIFFRACTION' 2.40 2.64 1589 0.2024 99.94 0.2723 138 . . . . . 'X-RAY DIFFRACTION' 2.64 3.02 1620 0.2178 99.89 0.2752 134 . . . . . 'X-RAY DIFFRACTION' 3.02 3.81 1615 0.2039 99.89 0.2603 139 . . . . . 'X-RAY DIFFRACTION' 3.81 32.56 1725 0.2024 99.68 0.2059 147 . . . . . # _struct.entry_id 13TU _struct.title 'Orf9b homodimer in complex with fragment ZINC000037716618' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 13TU _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'Homodimer, SARS-CoV-2, Innate immunity, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ORF9B_SARS2 _struct_ref.pdbx_db_accession P0DTD2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDPKISEMHPALRLVDPQIQLAVTRMENAVGRDQNNVGPKVYPIILRLGSPLSLNMARKTLNSLEDKAFQLTPIAVQMTK LATTEELPDEFVVVTVK ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 13TU A 1 ? 97 ? P0DTD2 1 ? 97 ? 1 97 2 1 13TU B 1 ? 97 ? P0DTD2 1 ? 97 ? 1 97 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4080 ? 1 MORE -7 ? 1 'SSA (A^2)' 9320 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 4 ? MET A 8 ? LYS A 4 MET A 8 5 ? 5 HELX_P HELX_P2 AA2 THR A 83 ? LEU A 87 ? THR A 83 LEU A 87 5 ? 5 HELX_P HELX_P3 AA3 THR B 83 ? LEU B 87 ? THR B 83 LEU B 87 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 HIS 9 A . ? HIS 9 A PRO 10 A ? PRO 10 A 1 2.64 2 HIS 9 B . ? HIS 9 B PRO 10 B ? PRO 10 B 1 -1.34 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 4 ? AA3 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MET A 78 ? THR A 79 ? MET A 78 THR A 79 AA1 2 LEU A 12 ? VAL A 15 ? LEU A 12 VAL A 15 AA1 3 ILE A 44 ? LEU A 48 ? ILE A 44 LEU A 48 AA1 4 GLU A 90 ? VAL A 96 ? GLU A 90 VAL A 96 AA1 5 LEU B 52 ? ASN B 62 ? LEU B 52 ASN B 62 AA1 6 LYS B 67 ? PRO B 73 ? LYS B 67 PRO B 73 AA2 1 LYS A 40 ? TYR A 42 ? LYS A 40 TYR A 42 AA2 2 ILE A 19 ? VAL A 23 ? ILE A 19 VAL A 23 AA2 3 ILE B 19 ? VAL B 23 ? ILE B 19 VAL B 23 AA2 4 LYS B 40 ? TYR B 42 ? LYS B 40 TYR B 42 AA3 1 ALA A 68 ? ILE A 74 ? ALA A 68 ILE A 74 AA3 2 SER A 53 ? LEU A 61 ? SER A 53 LEU A 61 AA3 3 GLU B 90 ? VAL B 96 ? GLU B 90 VAL B 96 AA3 4 ILE B 44 ? LEU B 48 ? ILE B 44 LEU B 48 AA3 5 ARG B 13 ? VAL B 15 ? ARG B 13 VAL B 15 AA3 6 MET B 78 ? LYS B 80 ? MET B 78 LYS B 80 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O THR A 79 ? O THR A 79 N LEU A 14 ? N LEU A 14 AA1 2 3 N VAL A 15 ? N VAL A 15 O ILE A 44 ? O ILE A 44 AA1 3 4 N ILE A 45 ? N ILE A 45 O VAL A 94 ? O VAL A 94 AA1 4 5 N PHE A 91 ? N PHE A 91 O ALA B 57 ? O ALA B 57 AA1 5 6 N ARG B 58 ? N ARG B 58 O GLN B 70 ? O GLN B 70 AA2 1 2 O LYS A 40 ? O LYS A 40 N VAL A 23 ? N VAL A 23 AA2 2 3 N ALA A 22 ? N ALA A 22 O GLN B 20 ? O GLN B 20 AA2 3 4 N VAL B 23 ? N VAL B 23 O LYS B 40 ? O LYS B 40 AA3 1 2 O THR A 72 ? O THR A 72 N MET A 56 ? N MET A 56 AA3 2 3 N ALA A 57 ? N ALA A 57 O PHE B 91 ? O PHE B 91 AA3 3 4 O VAL B 94 ? O VAL B 94 N ILE B 45 ? N ILE B 45 AA3 4 5 O LEU B 46 ? O LEU B 46 N ARG B 13 ? N ARG B 13 AA3 5 6 N LEU B 14 ? N LEU B 14 O THR B 79 ? O THR B 79 # _pdbx_entry_details.entry_id 13TU _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 16 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OE1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 GLN _pdbx_validate_close_contact.auth_seq_id_2 77 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 7 ? ? -143.92 47.39 2 1 ASP A 66 ? ? -160.38 66.56 3 1 ASP B 16 ? ? -31.42 119.86 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 8.235366357 _pdbx_refine_tls.origin_y -0.794595548148 _pdbx_refine_tls.origin_z -4.31185868036 _pdbx_refine_tls.T[1][1] 0.221902233466 _pdbx_refine_tls.T[2][2] 0.217441836284 _pdbx_refine_tls.T[3][3] 0.255843748256 _pdbx_refine_tls.T[1][2] 0.0198450500971 _pdbx_refine_tls.T[1][3] -0.00529043030346 _pdbx_refine_tls.T[2][3] 0.060748347894 _pdbx_refine_tls.L[1][1] 1.50547723879 _pdbx_refine_tls.L[2][2] 3.13820120208 _pdbx_refine_tls.L[3][3] 3.85721196917 _pdbx_refine_tls.L[1][2] -1.05729151463 _pdbx_refine_tls.L[1][3] -0.985751860994 _pdbx_refine_tls.L[2][3] 2.8112074409 _pdbx_refine_tls.S[1][1] -0.108298530574 _pdbx_refine_tls.S[1][2] -0.0258786153667 _pdbx_refine_tls.S[1][3] 0.0145397473173 _pdbx_refine_tls.S[2][1] 0.187940721433 _pdbx_refine_tls.S[2][2] 0.00281773160476 _pdbx_refine_tls.S[2][3] 0.0149167432446 _pdbx_refine_tls.S[3][1] 0.41788853744 _pdbx_refine_tls.S[3][2] 0.00116785747284 _pdbx_refine_tls.S[3][3] 0.114483878312 # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id S _pdbx_refine_tls_group.end_auth_seq_id 157 _pdbx_refine_tls_group.end_label_asym_id F _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection . _pdbx_refine_tls_group.selection_details all # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 26 ? A MET 26 2 1 Y 1 A GLU 27 ? A GLU 27 3 1 Y 1 A ASN 28 ? A ASN 28 4 1 Y 1 A ALA 29 ? A ALA 29 5 1 Y 1 A VAL 30 ? A VAL 30 6 1 Y 1 A GLY 31 ? A GLY 31 7 1 Y 1 A ARG 32 ? A ARG 32 8 1 Y 1 A ASP 33 ? A ASP 33 9 1 Y 1 A GLN 34 ? A GLN 34 10 1 Y 1 A ASN 35 ? A ASN 35 11 1 Y 1 A ASN 36 ? A ASN 36 12 1 Y 1 A VAL 37 ? A VAL 37 13 1 Y 1 A GLY 38 ? A GLY 38 14 1 Y 1 B MET 1 ? B MET 1 15 1 Y 1 B ASP 2 ? B ASP 2 16 1 Y 1 B PRO 3 ? B PRO 3 17 1 Y 1 B LYS 4 ? B LYS 4 18 1 Y 1 B ARG 25 ? B ARG 25 19 1 Y 1 B MET 26 ? B MET 26 20 1 Y 1 B GLU 27 ? B GLU 27 21 1 Y 1 B ASN 28 ? B ASN 28 22 1 Y 1 B ALA 29 ? B ALA 29 23 1 Y 1 B VAL 30 ? B VAL 30 24 1 Y 1 B GLY 31 ? B GLY 31 25 1 Y 1 B ARG 32 ? B ARG 32 26 1 Y 1 B ASP 33 ? B ASP 33 27 1 Y 1 B GLN 34 ? B GLN 34 28 1 Y 1 B ASN 35 ? B ASN 35 29 1 Y 1 B ASN 36 ? B ASN 36 30 1 Y 1 B VAL 37 ? B VAL 37 31 1 Y 1 B GLY 38 ? B GLY 38 32 1 Y 1 B LYS 97 ? B LYS 97 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1C1I C13 C Y N 1 A1C1I C15 C Y N 2 A1C1I C17 C Y N 3 A1C1I C02 C N N 4 A1C1I C04 C Y N 5 A1C1I C05 C Y N 6 A1C1I C06 C Y N 7 A1C1I C11 C N N 8 A1C1I C12 C Y N 9 A1C1I C14 C Y N 10 A1C1I C16 C Y N 11 A1C1I C19 C Y N 12 A1C1I F18 F N N 13 A1C1I N10 N N N 14 A1C1I N20 N Y N 15 A1C1I O01 O N N 16 A1C1I O03 O N N 17 A1C1I O08 O N N 18 A1C1I O09 O N N 19 A1C1I S07 S N N 20 A1C1I H131 H N N 21 A1C1I H151 H N N 22 A1C1I H051 H N N 23 A1C1I H112 H N N 24 A1C1I H111 H N N 25 A1C1I H141 H N N 26 A1C1I H161 H N N 27 A1C1I H191 H N N 28 A1C1I H101 H N N 29 A1C1I H201 H N N 30 A1C1I H1 H N N 31 ALA N N N N 32 ALA CA C N S 33 ALA C C N N 34 ALA O O N N 35 ALA CB C N N 36 ALA OXT O N N 37 ALA H H N N 38 ALA H2 H N N 39 ALA HA H N N 40 ALA HB1 H N N 41 ALA HB2 H N N 42 ALA HB3 H N N 43 ALA HXT H N N 44 ARG N N N N 45 ARG CA C N S 46 ARG C C N N 47 ARG O O N N 48 ARG CB C N N 49 ARG CG C N N 50 ARG CD C N N 51 ARG NE N N N 52 ARG CZ C N N 53 ARG NH1 N N N 54 ARG NH2 N N N 55 ARG OXT O N N 56 ARG H H N N 57 ARG H2 H N N 58 ARG HA H N N 59 ARG HB2 H N N 60 ARG HB3 H N N 61 ARG HG2 H N N 62 ARG HG3 H N N 63 ARG HD2 H N N 64 ARG HD3 H N N 65 ARG HE H N N 66 ARG HH11 H N N 67 ARG HH12 H N N 68 ARG HH21 H N N 69 ARG HH22 H N N 70 ARG HXT H N N 71 ASN N N N N 72 ASN CA C N S 73 ASN C C N N 74 ASN O O N N 75 ASN CB C N N 76 ASN CG C N N 77 ASN OD1 O N N 78 ASN ND2 N N N 79 ASN OXT O N N 80 ASN H H N N 81 ASN H2 H N N 82 ASN HA H N N 83 ASN HB2 H N N 84 ASN HB3 H N N 85 ASN HD21 H N N 86 ASN HD22 H N N 87 ASN HXT H N N 88 ASP N N N N 89 ASP CA C N S 90 ASP C C N N 91 ASP O O N N 92 ASP CB C N N 93 ASP CG C N N 94 ASP OD1 O N N 95 ASP OD2 O N N 96 ASP OXT O N N 97 ASP H H N N 98 ASP H2 H N N 99 ASP HA H N N 100 ASP HB2 H N N 101 ASP HB3 H N N 102 ASP HD2 H N N 103 ASP HXT H N N 104 D10 C1 C N N 105 D10 C2 C N N 106 D10 C3 C N N 107 D10 C4 C N N 108 D10 C5 C N N 109 D10 C6 C N N 110 D10 C7 C N N 111 D10 C8 C N N 112 D10 C9 C N N 113 D10 C10 C N N 114 D10 H11 H N N 115 D10 H12 H N N 116 D10 H13 H N N 117 D10 H21 H N N 118 D10 H22 H N N 119 D10 H31 H N N 120 D10 H32 H N N 121 D10 H41 H N N 122 D10 H42 H N N 123 D10 H51 H N N 124 D10 H52 H N N 125 D10 H61 H N N 126 D10 H62 H N N 127 D10 H71 H N N 128 D10 H72 H N N 129 D10 H81 H N N 130 D10 H82 H N N 131 D10 H91 H N N 132 D10 H92 H N N 133 D10 H101 H N N 134 D10 H102 H N N 135 D10 H103 H N N 136 DMS S S N N 137 DMS O O N N 138 DMS C1 C N N 139 DMS C2 C N N 140 DMS H11 H N N 141 DMS H12 H N N 142 DMS H13 H N N 143 DMS H21 H N N 144 DMS H22 H N N 145 DMS H23 H N N 146 GLN N N N N 147 GLN CA C N S 148 GLN C C N N 149 GLN O O N N 150 GLN CB C N N 151 GLN CG C N N 152 GLN CD C N N 153 GLN OE1 O N N 154 GLN NE2 N N N 155 GLN OXT O N N 156 GLN H H N N 157 GLN H2 H N N 158 GLN HA H N N 159 GLN HB2 H N N 160 GLN HB3 H N N 161 GLN HG2 H N N 162 GLN HG3 H N N 163 GLN HE21 H N N 164 GLN HE22 H N N 165 GLN HXT H N N 166 GLU N N N N 167 GLU CA C N S 168 GLU C C N N 169 GLU O O N N 170 GLU CB C N N 171 GLU CG C N N 172 GLU CD C N N 173 GLU OE1 O N N 174 GLU OE2 O N N 175 GLU OXT O N N 176 GLU H H N N 177 GLU H2 H N N 178 GLU HA H N N 179 GLU HB2 H N N 180 GLU HB3 H N N 181 GLU HG2 H N N 182 GLU HG3 H N N 183 GLU HE2 H N N 184 GLU HXT H N N 185 GLY N N N N 186 GLY CA C N N 187 GLY C C N N 188 GLY O O N N 189 GLY OXT O N N 190 GLY H H N N 191 GLY H2 H N N 192 GLY HA2 H N N 193 GLY HA3 H N N 194 GLY HXT H N N 195 HIS N N N N 196 HIS CA C N S 197 HIS C C N N 198 HIS O O N N 199 HIS CB C N N 200 HIS CG C Y N 201 HIS ND1 N Y N 202 HIS CD2 C Y N 203 HIS CE1 C Y N 204 HIS NE2 N Y N 205 HIS OXT O N N 206 HIS H H N N 207 HIS H2 H N N 208 HIS HA H N N 209 HIS HB2 H N N 210 HIS HB3 H N N 211 HIS HD1 H N N 212 HIS HD2 H N N 213 HIS HE1 H N N 214 HIS HE2 H N N 215 HIS HXT H N N 216 HOH O O N N 217 HOH H1 H N N 218 HOH H2 H N N 219 ILE N N N N 220 ILE CA C N S 221 ILE C C N N 222 ILE O O N N 223 ILE CB C N S 224 ILE CG1 C N N 225 ILE CG2 C N N 226 ILE CD1 C N N 227 ILE OXT O N N 228 ILE H H N N 229 ILE H2 H N N 230 ILE HA H N N 231 ILE HB H N N 232 ILE HG12 H N N 233 ILE HG13 H N N 234 ILE HG21 H N N 235 ILE HG22 H N N 236 ILE HG23 H N N 237 ILE HD11 H N N 238 ILE HD12 H N N 239 ILE HD13 H N N 240 ILE HXT H N N 241 LEU N N N N 242 LEU CA C N S 243 LEU C C N N 244 LEU O O N N 245 LEU CB C N N 246 LEU CG C N N 247 LEU CD1 C N N 248 LEU CD2 C N N 249 LEU OXT O N N 250 LEU H H N N 251 LEU H2 H N N 252 LEU HA H N N 253 LEU HB2 H N N 254 LEU HB3 H N N 255 LEU HG H N N 256 LEU HD11 H N N 257 LEU HD12 H N N 258 LEU HD13 H N N 259 LEU HD21 H N N 260 LEU HD22 H N N 261 LEU HD23 H N N 262 LEU HXT H N N 263 LYS N N N N 264 LYS CA C N S 265 LYS C C N N 266 LYS O O N N 267 LYS CB C N N 268 LYS CG C N N 269 LYS CD C N N 270 LYS CE C N N 271 LYS NZ N N N 272 LYS OXT O N N 273 LYS H H N N 274 LYS H2 H N N 275 LYS HA H N N 276 LYS HB2 H N N 277 LYS HB3 H N N 278 LYS HG2 H N N 279 LYS HG3 H N N 280 LYS HD2 H N N 281 LYS HD3 H N N 282 LYS HE2 H N N 283 LYS HE3 H N N 284 LYS HZ1 H N N 285 LYS HZ2 H N N 286 LYS HZ3 H N N 287 LYS HXT H N N 288 MET N N N N 289 MET CA C N S 290 MET C C N N 291 MET O O N N 292 MET CB C N N 293 MET CG C N N 294 MET SD S N N 295 MET CE C N N 296 MET OXT O N N 297 MET H H N N 298 MET H2 H N N 299 MET HA H N N 300 MET HB2 H N N 301 MET HB3 H N N 302 MET HG2 H N N 303 MET HG3 H N N 304 MET HE1 H N N 305 MET HE2 H N N 306 MET HE3 H N N 307 MET HXT H N N 308 PHE N N N N 309 PHE CA C N S 310 PHE C C N N 311 PHE O O N N 312 PHE CB C N N 313 PHE CG C Y N 314 PHE CD1 C Y N 315 PHE CD2 C Y N 316 PHE CE1 C Y N 317 PHE CE2 C Y N 318 PHE CZ C Y N 319 PHE OXT O N N 320 PHE H H N N 321 PHE H2 H N N 322 PHE HA H N N 323 PHE HB2 H N N 324 PHE HB3 H N N 325 PHE HD1 H N N 326 PHE HD2 H N N 327 PHE HE1 H N N 328 PHE HE2 H N N 329 PHE HZ H N N 330 PHE HXT H N N 331 PRO N N N N 332 PRO CA C N S 333 PRO C C N N 334 PRO O O N N 335 PRO CB C N N 336 PRO CG C N N 337 PRO CD C N N 338 PRO OXT O N N 339 PRO H H N N 340 PRO HA H N N 341 PRO HB2 H N N 342 PRO HB3 H N N 343 PRO HG2 H N N 344 PRO HG3 H N N 345 PRO HD2 H N N 346 PRO HD3 H N N 347 PRO HXT H N N 348 SER N N N N 349 SER CA C N S 350 SER C C N N 351 SER O O N N 352 SER CB C N N 353 SER OG O N N 354 SER OXT O N N 355 SER H H N N 356 SER H2 H N N 357 SER HA H N N 358 SER HB2 H N N 359 SER HB3 H N N 360 SER HG H N N 361 SER HXT H N N 362 THR N N N N 363 THR CA C N S 364 THR C C N N 365 THR O O N N 366 THR CB C N R 367 THR OG1 O N N 368 THR CG2 C N N 369 THR OXT O N N 370 THR H H N N 371 THR H2 H N N 372 THR HA H N N 373 THR HB H N N 374 THR HG1 H N N 375 THR HG21 H N N 376 THR HG22 H N N 377 THR HG23 H N N 378 THR HXT H N N 379 TYR N N N N 380 TYR CA C N S 381 TYR C C N N 382 TYR O O N N 383 TYR CB C N N 384 TYR CG C Y N 385 TYR CD1 C Y N 386 TYR CD2 C Y N 387 TYR CE1 C Y N 388 TYR CE2 C Y N 389 TYR CZ C Y N 390 TYR OH O N N 391 TYR OXT O N N 392 TYR H H N N 393 TYR H2 H N N 394 TYR HA H N N 395 TYR HB2 H N N 396 TYR HB3 H N N 397 TYR HD1 H N N 398 TYR HD2 H N N 399 TYR HE1 H N N 400 TYR HE2 H N N 401 TYR HH H N N 402 TYR HXT H N N 403 VAL N N N N 404 VAL CA C N S 405 VAL C C N N 406 VAL O O N N 407 VAL CB C N N 408 VAL CG1 C N N 409 VAL CG2 C N N 410 VAL OXT O N N 411 VAL H H N N 412 VAL H2 H N N 413 VAL HA H N N 414 VAL HB H N N 415 VAL HG11 H N N 416 VAL HG12 H N N 417 VAL HG13 H N N 418 VAL HG21 H N N 419 VAL HG22 H N N 420 VAL HG23 H N N 421 VAL HXT H N N 422 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1C1I C02 O01 doub N N 1 A1C1I O03 C02 sing N N 2 A1C1I C04 C02 sing N N 3 A1C1I C05 C04 doub Y N 4 A1C1I C06 C05 sing Y N 5 A1C1I O08 S07 doub N N 6 A1C1I O09 S07 doub N N 7 A1C1I N10 S07 sing N N 8 A1C1I C11 N10 sing N N 9 A1C1I C12 C11 sing N N 10 A1C1I C13 C12 doub Y N 11 A1C1I C14 C13 sing Y N 12 A1C1I C15 C14 doub Y N 13 A1C1I C16 C15 sing Y N 14 A1C1I C17 C16 doub Y N 15 A1C1I F18 C17 sing N N 16 A1C1I S07 C06 sing N N 17 A1C1I C19 C06 doub Y N 18 A1C1I N20 C19 sing Y N 19 A1C1I C04 N20 sing Y N 20 A1C1I C12 C17 sing Y N 21 A1C1I C13 H131 sing N N 22 A1C1I C15 H151 sing N N 23 A1C1I C05 H051 sing N N 24 A1C1I C11 H112 sing N N 25 A1C1I C11 H111 sing N N 26 A1C1I C14 H141 sing N N 27 A1C1I C16 H161 sing N N 28 A1C1I C19 H191 sing N N 29 A1C1I N10 H101 sing N N 30 A1C1I N20 H201 sing N N 31 A1C1I O03 H1 sing N N 32 ALA N CA sing N N 33 ALA N H sing N N 34 ALA N H2 sing N N 35 ALA CA C sing N N 36 ALA CA CB sing N N 37 ALA CA HA sing N N 38 ALA C O doub N N 39 ALA C OXT sing N N 40 ALA CB HB1 sing N N 41 ALA CB HB2 sing N N 42 ALA CB HB3 sing N N 43 ALA OXT HXT sing N N 44 ARG N CA sing N N 45 ARG N H sing N N 46 ARG N H2 sing N N 47 ARG CA C sing N N 48 ARG CA CB sing N N 49 ARG CA HA sing N N 50 ARG C O doub N N 51 ARG C OXT sing N N 52 ARG CB CG sing N N 53 ARG CB HB2 sing N N 54 ARG CB HB3 sing N N 55 ARG CG CD sing N N 56 ARG CG HG2 sing N N 57 ARG CG HG3 sing N N 58 ARG CD NE sing N N 59 ARG CD HD2 sing N N 60 ARG CD HD3 sing N N 61 ARG NE CZ sing N N 62 ARG NE HE sing N N 63 ARG CZ NH1 sing N N 64 ARG CZ NH2 doub N N 65 ARG NH1 HH11 sing N N 66 ARG NH1 HH12 sing N N 67 ARG NH2 HH21 sing N N 68 ARG NH2 HH22 sing N N 69 ARG OXT HXT sing N N 70 ASN N CA sing N N 71 ASN N H sing N N 72 ASN N H2 sing N N 73 ASN CA C sing N N 74 ASN CA CB sing N N 75 ASN CA HA sing N N 76 ASN C O doub N N 77 ASN C OXT sing N N 78 ASN CB CG sing N N 79 ASN CB HB2 sing N N 80 ASN CB HB3 sing N N 81 ASN CG OD1 doub N N 82 ASN CG ND2 sing N N 83 ASN ND2 HD21 sing N N 84 ASN ND2 HD22 sing N N 85 ASN OXT HXT sing N N 86 ASP N CA sing N N 87 ASP N H sing N N 88 ASP N H2 sing N N 89 ASP CA C sing N N 90 ASP CA CB sing N N 91 ASP CA HA sing N N 92 ASP C O doub N N 93 ASP C OXT sing N N 94 ASP CB CG sing N N 95 ASP CB HB2 sing N N 96 ASP CB HB3 sing N N 97 ASP CG OD1 doub N N 98 ASP CG OD2 sing N N 99 ASP OD2 HD2 sing N N 100 ASP OXT HXT sing N N 101 D10 C1 C2 sing N N 102 D10 C1 H11 sing N N 103 D10 C1 H12 sing N N 104 D10 C1 H13 sing N N 105 D10 C2 C3 sing N N 106 D10 C2 H21 sing N N 107 D10 C2 H22 sing N N 108 D10 C3 C4 sing N N 109 D10 C3 H31 sing N N 110 D10 C3 H32 sing N N 111 D10 C4 C5 sing N N 112 D10 C4 H41 sing N N 113 D10 C4 H42 sing N N 114 D10 C5 C6 sing N N 115 D10 C5 H51 sing N N 116 D10 C5 H52 sing N N 117 D10 C6 C7 sing N N 118 D10 C6 H61 sing N N 119 D10 C6 H62 sing N N 120 D10 C7 C8 sing N N 121 D10 C7 H71 sing N N 122 D10 C7 H72 sing N N 123 D10 C8 C9 sing N N 124 D10 C8 H81 sing N N 125 D10 C8 H82 sing N N 126 D10 C9 C10 sing N N 127 D10 C9 H91 sing N N 128 D10 C9 H92 sing N N 129 D10 C10 H101 sing N N 130 D10 C10 H102 sing N N 131 D10 C10 H103 sing N N 132 DMS S O doub N N 133 DMS S C1 sing N N 134 DMS S C2 sing N N 135 DMS C1 H11 sing N N 136 DMS C1 H12 sing N N 137 DMS C1 H13 sing N N 138 DMS C2 H21 sing N N 139 DMS C2 H22 sing N N 140 DMS C2 H23 sing N N 141 GLN N CA sing N N 142 GLN N H sing N N 143 GLN N H2 sing N N 144 GLN CA C sing N N 145 GLN CA CB sing N N 146 GLN CA HA sing N N 147 GLN C O doub N N 148 GLN C OXT sing N N 149 GLN CB CG sing N N 150 GLN CB HB2 sing N N 151 GLN CB HB3 sing N N 152 GLN CG CD sing N N 153 GLN CG HG2 sing N N 154 GLN CG HG3 sing N N 155 GLN CD OE1 doub N N 156 GLN CD NE2 sing N N 157 GLN NE2 HE21 sing N N 158 GLN NE2 HE22 sing N N 159 GLN OXT HXT sing N N 160 GLU N CA sing N N 161 GLU N H sing N N 162 GLU N H2 sing N N 163 GLU CA C sing N N 164 GLU CA CB sing N N 165 GLU CA HA sing N N 166 GLU C O doub N N 167 GLU C OXT sing N N 168 GLU CB CG sing N N 169 GLU CB HB2 sing N N 170 GLU CB HB3 sing N N 171 GLU CG CD sing N N 172 GLU CG HG2 sing N N 173 GLU CG HG3 sing N N 174 GLU CD OE1 doub N N 175 GLU CD OE2 sing N N 176 GLU OE2 HE2 sing N N 177 GLU OXT HXT sing N N 178 GLY N CA sing N N 179 GLY N H sing N N 180 GLY N H2 sing N N 181 GLY CA C sing N N 182 GLY CA HA2 sing N N 183 GLY CA HA3 sing N N 184 GLY C O doub N N 185 GLY C OXT sing N N 186 GLY OXT HXT sing N N 187 HIS N CA sing N N 188 HIS N H sing N N 189 HIS N H2 sing N N 190 HIS CA C sing N N 191 HIS CA CB sing N N 192 HIS CA HA sing N N 193 HIS C O doub N N 194 HIS C OXT sing N N 195 HIS CB CG sing N N 196 HIS CB HB2 sing N N 197 HIS CB HB3 sing N N 198 HIS CG ND1 sing Y N 199 HIS CG CD2 doub Y N 200 HIS ND1 CE1 doub Y N 201 HIS ND1 HD1 sing N N 202 HIS CD2 NE2 sing Y N 203 HIS CD2 HD2 sing N N 204 HIS CE1 NE2 sing Y N 205 HIS CE1 HE1 sing N N 206 HIS NE2 HE2 sing N N 207 HIS OXT HXT sing N N 208 HOH O H1 sing N N 209 HOH O H2 sing N N 210 ILE N CA sing N N 211 ILE N H sing N N 212 ILE N H2 sing N N 213 ILE CA C sing N N 214 ILE CA CB sing N N 215 ILE CA HA sing N N 216 ILE C O doub N N 217 ILE C OXT sing N N 218 ILE CB CG1 sing N N 219 ILE CB CG2 sing N N 220 ILE CB HB sing N N 221 ILE CG1 CD1 sing N N 222 ILE CG1 HG12 sing N N 223 ILE CG1 HG13 sing N N 224 ILE CG2 HG21 sing N N 225 ILE CG2 HG22 sing N N 226 ILE CG2 HG23 sing N N 227 ILE CD1 HD11 sing N N 228 ILE CD1 HD12 sing N N 229 ILE CD1 HD13 sing N N 230 ILE OXT HXT sing N N 231 LEU N CA sing N N 232 LEU N H sing N N 233 LEU N H2 sing N N 234 LEU CA C sing N N 235 LEU CA CB sing N N 236 LEU CA HA sing N N 237 LEU C O doub N N 238 LEU C OXT sing N N 239 LEU CB CG sing N N 240 LEU CB HB2 sing N N 241 LEU CB HB3 sing N N 242 LEU CG CD1 sing N N 243 LEU CG CD2 sing N N 244 LEU CG HG sing N N 245 LEU CD1 HD11 sing N N 246 LEU CD1 HD12 sing N N 247 LEU CD1 HD13 sing N N 248 LEU CD2 HD21 sing N N 249 LEU CD2 HD22 sing N N 250 LEU CD2 HD23 sing N N 251 LEU OXT HXT sing N N 252 LYS N CA sing N N 253 LYS N H sing N N 254 LYS N H2 sing N N 255 LYS CA C sing N N 256 LYS CA CB sing N N 257 LYS CA HA sing N N 258 LYS C O doub N N 259 LYS C OXT sing N N 260 LYS CB CG sing N N 261 LYS CB HB2 sing N N 262 LYS CB HB3 sing N N 263 LYS CG CD sing N N 264 LYS CG HG2 sing N N 265 LYS CG HG3 sing N N 266 LYS CD CE sing N N 267 LYS CD HD2 sing N N 268 LYS CD HD3 sing N N 269 LYS CE NZ sing N N 270 LYS CE HE2 sing N N 271 LYS CE HE3 sing N N 272 LYS NZ HZ1 sing N N 273 LYS NZ HZ2 sing N N 274 LYS NZ HZ3 sing N N 275 LYS OXT HXT sing N N 276 MET N CA sing N N 277 MET N H sing N N 278 MET N H2 sing N N 279 MET CA C sing N N 280 MET CA CB sing N N 281 MET CA HA sing N N 282 MET C O doub N N 283 MET C OXT sing N N 284 MET CB CG sing N N 285 MET CB HB2 sing N N 286 MET CB HB3 sing N N 287 MET CG SD sing N N 288 MET CG HG2 sing N N 289 MET CG HG3 sing N N 290 MET SD CE sing N N 291 MET CE HE1 sing N N 292 MET CE HE2 sing N N 293 MET CE HE3 sing N N 294 MET OXT HXT sing N N 295 PHE N CA sing N N 296 PHE N H sing N N 297 PHE N H2 sing N N 298 PHE CA C sing N N 299 PHE CA CB sing N N 300 PHE CA HA sing N N 301 PHE C O doub N N 302 PHE C OXT sing N N 303 PHE CB CG sing N N 304 PHE CB HB2 sing N N 305 PHE CB HB3 sing N N 306 PHE CG CD1 doub Y N 307 PHE CG CD2 sing Y N 308 PHE CD1 CE1 sing Y N 309 PHE CD1 HD1 sing N N 310 PHE CD2 CE2 doub Y N 311 PHE CD2 HD2 sing N N 312 PHE CE1 CZ doub Y N 313 PHE CE1 HE1 sing N N 314 PHE CE2 CZ sing Y N 315 PHE CE2 HE2 sing N N 316 PHE CZ HZ sing N N 317 PHE OXT HXT sing N N 318 PRO N CA sing N N 319 PRO N CD sing N N 320 PRO N H sing N N 321 PRO CA C sing N N 322 PRO CA CB sing N N 323 PRO CA HA sing N N 324 PRO C O doub N N 325 PRO C OXT sing N N 326 PRO CB CG sing N N 327 PRO CB HB2 sing N N 328 PRO CB HB3 sing N N 329 PRO CG CD sing N N 330 PRO CG HG2 sing N N 331 PRO CG HG3 sing N N 332 PRO CD HD2 sing N N 333 PRO CD HD3 sing N N 334 PRO OXT HXT sing N N 335 SER N CA sing N N 336 SER N H sing N N 337 SER N H2 sing N N 338 SER CA C sing N N 339 SER CA CB sing N N 340 SER CA HA sing N N 341 SER C O doub N N 342 SER C OXT sing N N 343 SER CB OG sing N N 344 SER CB HB2 sing N N 345 SER CB HB3 sing N N 346 SER OG HG sing N N 347 SER OXT HXT sing N N 348 THR N CA sing N N 349 THR N H sing N N 350 THR N H2 sing N N 351 THR CA C sing N N 352 THR CA CB sing N N 353 THR CA HA sing N N 354 THR C O doub N N 355 THR C OXT sing N N 356 THR CB OG1 sing N N 357 THR CB CG2 sing N N 358 THR CB HB sing N N 359 THR OG1 HG1 sing N N 360 THR CG2 HG21 sing N N 361 THR CG2 HG22 sing N N 362 THR CG2 HG23 sing N N 363 THR OXT HXT sing N N 364 TYR N CA sing N N 365 TYR N H sing N N 366 TYR N H2 sing N N 367 TYR CA C sing N N 368 TYR CA CB sing N N 369 TYR CA HA sing N N 370 TYR C O doub N N 371 TYR C OXT sing N N 372 TYR CB CG sing N N 373 TYR CB HB2 sing N N 374 TYR CB HB3 sing N N 375 TYR CG CD1 doub Y N 376 TYR CG CD2 sing Y N 377 TYR CD1 CE1 sing Y N 378 TYR CD1 HD1 sing N N 379 TYR CD2 CE2 doub Y N 380 TYR CD2 HD2 sing N N 381 TYR CE1 CZ doub Y N 382 TYR CE1 HE1 sing N N 383 TYR CE2 CZ sing Y N 384 TYR CE2 HE2 sing N N 385 TYR CZ OH sing N N 386 TYR OH HH sing N N 387 TYR OXT HXT sing N N 388 VAL N CA sing N N 389 VAL N H sing N N 390 VAL N H2 sing N N 391 VAL CA C sing N N 392 VAL CA CB sing N N 393 VAL CA HA sing N N 394 VAL C O doub N N 395 VAL C OXT sing N N 396 VAL CB CG1 sing N N 397 VAL CB CG2 sing N N 398 VAL CB HB sing N N 399 VAL CG1 HG11 sing N N 400 VAL CG1 HG12 sing N N 401 VAL CG1 HG13 sing N N 402 VAL CG2 HG21 sing N N 403 VAL CG2 HG22 sing N N 404 VAL CG2 HG23 sing N N 405 VAL OXT HXT sing N N 406 # _em_software.id 1 _em_software.name PHENIX _em_software.version 1.21.1_5286 _em_software.category 'MODEL REFINEMENT' _em_software.details . # _pdbx_audit_support.ordinal 1 _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number U19AI171110 # _pdbx_deposit_group.group_id G_1002357 _pdbx_deposit_group.group_title 'PanDDA analysis group deposition of SARS-CoV-2 Orf9b homodimer fragment screen' _pdbx_deposit_group.group_description 'SARS-CoV-2 Orf9b homodimer in complex with ligands identified by X-ray diffraction using ALS 8.3.1' _pdbx_deposit_group.group_type undefined # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 13TU _atom_sites.fract_transf_matrix[1][1] 0.027967 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015356 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013608 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? F ? ? 4.90428 4.07044 ? ? 12.99538 1.63651 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 ? ? 3.49406 27.47979 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #