data_13UD # _entry.id 13UD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.416 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 13UD pdb_000013ud 10.2210/pdb13ud/pdb WWPDB D_1001409388 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-08-26 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.entry_id 13UD _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2025-10-19 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # _pdbx_contact_author.id 1 _pdbx_contact_author.name_last Fraser _pdbx_contact_author.name_first James _pdbx_contact_author.name_mi S. _pdbx_contact_author.email jfraser@fraserlab.com _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5080-2859 # loop_ _audit_author.pdbx_ordinal _audit_author.name 1 'San Felipe, C.J.' 2 'Fraser, J.S.' # _citation.id primary _citation.title 'Orf9b homodimer in complex with fragments' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? _citation.country ? _citation.book_publisher ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'San Felipe, C.J.' 1 ? primary 'Fraser, J.S.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ORF9b protein' 10808.636 2 ? ? ? ? 2 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 1 ? ? ? ? 3 non-polymer syn DECANE 142.282 1 ? ? ? ? 4 non-polymer syn 'PARA-BROMOBENZYL ALCOHOL' 187.034 1 ? ? ? ? 5 water nat water 18.015 55 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ORF9b,Accessory protein 9b,ORF-9b,Protein 9b' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDPKISEMHPALRLVDPQIQLAVTRMENAVGRDQNNVGPKVYPIILRLGSPLSLNMARKTLNSLEDKAFQLTPIAVQMTK LATTEELPDEFVVVTVK ; _entity_poly.pdbx_seq_one_letter_code_can ;MDPKISEMHPALRLVDPQIQLAVTRMENAVGRDQNNVGPKVYPIILRLGSPLSLNMARKTLNSLEDKAFQLTPIAVQMTK LATTEELPDEFVVVTVK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DIMETHYL SULFOXIDE' DMS 3 DECANE D10 4 'PARA-BROMOBENZYL ALCOHOL' BRB 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 PRO n 1 4 LYS n 1 5 ILE n 1 6 SER n 1 7 GLU n 1 8 MET n 1 9 HIS n 1 10 PRO n 1 11 ALA n 1 12 LEU n 1 13 ARG n 1 14 LEU n 1 15 VAL n 1 16 ASP n 1 17 PRO n 1 18 GLN n 1 19 ILE n 1 20 GLN n 1 21 LEU n 1 22 ALA n 1 23 VAL n 1 24 THR n 1 25 ARG n 1 26 MET n 1 27 GLU n 1 28 ASN n 1 29 ALA n 1 30 VAL n 1 31 GLY n 1 32 ARG n 1 33 ASP n 1 34 GLN n 1 35 ASN n 1 36 ASN n 1 37 VAL n 1 38 GLY n 1 39 PRO n 1 40 LYS n 1 41 VAL n 1 42 TYR n 1 43 PRO n 1 44 ILE n 1 45 ILE n 1 46 LEU n 1 47 ARG n 1 48 LEU n 1 49 GLY n 1 50 SER n 1 51 PRO n 1 52 LEU n 1 53 SER n 1 54 LEU n 1 55 ASN n 1 56 MET n 1 57 ALA n 1 58 ARG n 1 59 LYS n 1 60 THR n 1 61 LEU n 1 62 ASN n 1 63 SER n 1 64 LEU n 1 65 GLU n 1 66 ASP n 1 67 LYS n 1 68 ALA n 1 69 PHE n 1 70 GLN n 1 71 LEU n 1 72 THR n 1 73 PRO n 1 74 ILE n 1 75 ALA n 1 76 VAL n 1 77 GLN n 1 78 MET n 1 79 THR n 1 80 LYS n 1 81 LEU n 1 82 ALA n 1 83 THR n 1 84 THR n 1 85 GLU n 1 86 GLU n 1 87 LEU n 1 88 PRO n 1 89 ASP n 1 90 GLU n 1 91 PHE n 1 92 VAL n 1 93 VAL n 1 94 VAL n 1 95 THR n 1 96 VAL n 1 97 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 97 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 9b _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BRB non-polymer . 'PARA-BROMOBENZYL ALCOHOL' ? 'C7 H7 Br O' 187.034 D10 non-polymer . DECANE ? 'C10 H22' 142.282 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 HIS 9 9 9 HIS HIS A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 MET 26 26 ? ? ? A . n A 1 27 GLU 27 27 ? ? ? A . n A 1 28 ASN 28 28 ? ? ? A . n A 1 29 ALA 29 29 ? ? ? A . n A 1 30 VAL 30 30 ? ? ? A . n A 1 31 GLY 31 31 ? ? ? A . n A 1 32 ARG 32 32 ? ? ? A . n A 1 33 ASP 33 33 ? ? ? A . n A 1 34 GLN 34 34 ? ? ? A . n A 1 35 ASN 35 35 ? ? ? A . n A 1 36 ASN 36 36 ? ? ? A . n A 1 37 VAL 37 37 ? ? ? A . n A 1 38 GLY 38 38 ? ? ? A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 MET 56 56 56 MET MET A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 MET 78 78 78 MET MET A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 PHE 91 91 91 PHE PHE A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 LYS 97 97 97 LYS LYS A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 ASP 2 2 ? ? ? B . n B 1 3 PRO 3 3 ? ? ? B . n B 1 4 LYS 4 4 ? ? ? B . n B 1 5 ILE 5 5 5 ILE ILE B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 GLU 7 7 7 GLU GLU B . n B 1 8 MET 8 8 8 MET MET B . n B 1 9 HIS 9 9 9 HIS HIS B . n B 1 10 PRO 10 10 10 PRO PRO B . n B 1 11 ALA 11 11 11 ALA ALA B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 ARG 13 13 13 ARG ARG B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 ASP 16 16 16 ASP ASP B . n B 1 17 PRO 17 17 17 PRO PRO B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 ILE 19 19 19 ILE ILE B . n B 1 20 GLN 20 20 20 GLN GLN B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 VAL 23 23 23 VAL VAL B . n B 1 24 THR 24 24 24 THR THR B . n B 1 25 ARG 25 25 ? ? ? B . n B 1 26 MET 26 26 ? ? ? B . n B 1 27 GLU 27 27 ? ? ? B . n B 1 28 ASN 28 28 ? ? ? B . n B 1 29 ALA 29 29 ? ? ? B . n B 1 30 VAL 30 30 ? ? ? B . n B 1 31 GLY 31 31 ? ? ? B . n B 1 32 ARG 32 32 ? ? ? B . n B 1 33 ASP 33 33 ? ? ? B . n B 1 34 GLN 34 34 ? ? ? B . n B 1 35 ASN 35 35 ? ? ? B . n B 1 36 ASN 36 36 ? ? ? B . n B 1 37 VAL 37 37 ? ? ? B . n B 1 38 GLY 38 38 ? ? ? B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 LYS 40 40 40 LYS LYS B . n B 1 41 VAL 41 41 41 VAL VAL B . n B 1 42 TYR 42 42 42 TYR TYR B . n B 1 43 PRO 43 43 43 PRO PRO B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 ILE 45 45 45 ILE ILE B . n B 1 46 LEU 46 46 46 LEU LEU B . n B 1 47 ARG 47 47 47 ARG ARG B . n B 1 48 LEU 48 48 48 LEU LEU B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 SER 50 50 50 SER SER B . n B 1 51 PRO 51 51 51 PRO PRO B . n B 1 52 LEU 52 52 52 LEU LEU B . n B 1 53 SER 53 53 53 SER SER B . n B 1 54 LEU 54 54 54 LEU LEU B . n B 1 55 ASN 55 55 55 ASN ASN B . n B 1 56 MET 56 56 56 MET MET B . n B 1 57 ALA 57 57 57 ALA ALA B . n B 1 58 ARG 58 58 58 ARG ARG B . n B 1 59 LYS 59 59 59 LYS LYS B . n B 1 60 THR 60 60 60 THR THR B . n B 1 61 LEU 61 61 61 LEU LEU B . n B 1 62 ASN 62 62 62 ASN ASN B . n B 1 63 SER 63 63 63 SER SER B . n B 1 64 LEU 64 64 64 LEU LEU B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 ASP 66 66 66 ASP ASP B . n B 1 67 LYS 67 67 67 LYS LYS B . n B 1 68 ALA 68 68 68 ALA ALA B . n B 1 69 PHE 69 69 69 PHE PHE B . n B 1 70 GLN 70 70 70 GLN GLN B . n B 1 71 LEU 71 71 71 LEU LEU B . n B 1 72 THR 72 72 72 THR THR B . n B 1 73 PRO 73 73 73 PRO PRO B . n B 1 74 ILE 74 74 74 ILE ILE B . n B 1 75 ALA 75 75 75 ALA ALA B . n B 1 76 VAL 76 76 76 VAL VAL B . n B 1 77 GLN 77 77 77 GLN GLN B . n B 1 78 MET 78 78 78 MET MET B . n B 1 79 THR 79 79 79 THR THR B . n B 1 80 LYS 80 80 80 LYS LYS B . n B 1 81 LEU 81 81 81 LEU LEU B . n B 1 82 ALA 82 82 82 ALA ALA B . n B 1 83 THR 83 83 83 THR THR B . n B 1 84 THR 84 84 84 THR THR B . n B 1 85 GLU 85 85 85 GLU GLU B . n B 1 86 GLU 86 86 86 GLU GLU B . n B 1 87 LEU 87 87 87 LEU LEU B . n B 1 88 PRO 88 88 88 PRO PRO B . n B 1 89 ASP 89 89 89 ASP ASP B . n B 1 90 GLU 90 90 90 GLU GLU B . n B 1 91 PHE 91 91 91 PHE PHE B . n B 1 92 VAL 92 92 92 VAL VAL B . n B 1 93 VAL 93 93 93 VAL VAL B . n B 1 94 VAL 94 94 94 VAL VAL B . n B 1 95 THR 95 95 95 THR THR B . n B 1 96 VAL 96 96 96 VAL VAL B . n B 1 97 LYS 97 97 ? ? ? B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id BRB _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id BRB _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS 1 101 101 DMS DMS A . D 3 D10 1 102 101 D10 Q59 A . E 4 BRB 1 101 102 BRB LIG B . F 5 HOH 1 201 34 HOH HOH A . F 5 HOH 2 202 150 HOH HOH A . F 5 HOH 3 203 161 HOH HOH A . F 5 HOH 4 204 25 HOH HOH A . F 5 HOH 5 205 37 HOH HOH A . F 5 HOH 6 206 15 HOH HOH A . F 5 HOH 7 207 18 HOH HOH A . F 5 HOH 8 208 26 HOH HOH A . F 5 HOH 9 209 4 HOH HOH A . F 5 HOH 10 210 2 HOH HOH A . F 5 HOH 11 211 7 HOH HOH A . F 5 HOH 12 212 6 HOH HOH A . F 5 HOH 13 213 21 HOH HOH A . F 5 HOH 14 214 8 HOH HOH A . F 5 HOH 15 215 10 HOH HOH A . F 5 HOH 16 216 5 HOH HOH A . F 5 HOH 17 217 143 HOH HOH A . F 5 HOH 18 218 3 HOH HOH A . F 5 HOH 19 219 13 HOH HOH A . F 5 HOH 20 220 31 HOH HOH A . F 5 HOH 21 221 53 HOH HOH A . F 5 HOH 22 222 14 HOH HOH A . F 5 HOH 23 223 1 HOH HOH A . F 5 HOH 24 224 66 HOH HOH A . F 5 HOH 25 225 12 HOH HOH A . F 5 HOH 26 226 16 HOH HOH A . F 5 HOH 27 227 19 HOH HOH A . F 5 HOH 28 228 28 HOH HOH A . F 5 HOH 29 229 20 HOH HOH A . F 5 HOH 30 230 107 HOH HOH A . F 5 HOH 31 231 36 HOH HOH A . F 5 HOH 32 232 125 HOH HOH A . F 5 HOH 33 233 68 HOH HOH A . F 5 HOH 34 234 90 HOH HOH A . F 5 HOH 35 235 81 HOH HOH A . F 5 HOH 36 236 69 HOH HOH A . F 5 HOH 37 237 145 HOH HOH A . F 5 HOH 38 238 52 HOH HOH A . F 5 HOH 39 239 142 HOH HOH A . F 5 HOH 40 240 82 HOH HOH A . F 5 HOH 41 241 94 HOH HOH A . F 5 HOH 42 242 168 HOH HOH A . F 5 HOH 43 243 44 HOH HOH A . F 5 HOH 44 244 97 HOH HOH A . F 5 HOH 45 245 105 HOH HOH A . G 5 HOH 1 201 32 HOH HOH B . G 5 HOH 2 202 63 HOH HOH B . G 5 HOH 3 203 49 HOH HOH B . G 5 HOH 4 204 141 HOH HOH B . G 5 HOH 5 205 11 HOH HOH B . G 5 HOH 6 206 73 HOH HOH B . G 5 HOH 7 207 30 HOH HOH B . G 5 HOH 8 208 9 HOH HOH B . G 5 HOH 9 209 17 HOH HOH B . G 5 HOH 10 210 98 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.type _software.contact_author _software.contact_author_email _software.location _software.classification _software.language _software.citation_id 1 PHENIX 1.21.1_5286 program 'Paul D. Adams' pdadams@lbl.gov https://www.phenix-online.org/ refinement Python/C++ ? 2 Aimless . ? ? ? ? 'data scaling' ? ? 3 XDS . ? ? ? ? 'data reduction' ? ? 4 PHASER . ? ? ? ? phasing ? ? # _cell.entry_id 13UD _cell.volume 170966.345 _cell.length_a 35.832 _cell.length_b 64.894 _cell.length_c 73.525 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.angle_alpha 90.000 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 13UD _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 13UD _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.79 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '10% PEG3350, 10% PEG1000, 10% MPD, 0.15M Ethylene Glycol, 0.1M MES pH 6.5, 0.1M Imidazole pH 6.5' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp_details ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.pdbx_collection_date 2023-10-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_scattering_type x-ray _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.116 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_wavelength_list 1.116 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? # _reflns.B_iso_Wilson_estimate 26.93 _reflns.entry_id 13UD _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.d_resolution_low 48.65 _reflns.d_resolution_high 1.61 _reflns.number_obs 22776 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_netI_over_sigmaI 13.5 _reflns.pdbx_redundancy 6.3 _reflns.pdbx_Rrim_I_all 0.097 _reflns.pdbx_Rpim_I_all 0.038 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_number_measured_all 142655 _reflns.pdbx_chi_squared 0.95 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.61 _reflns_shell.d_res_low 1.64 _reflns_shell.number_measured_all 6632 _reflns_shell.number_unique_obs 1105 _reflns_shell.Rmerge_I_obs 1.740 _reflns_shell.pdbx_chi_squared 0.73 _reflns_shell.pdbx_redundancy 6.0 _reflns_shell.percent_possible_obs 99.2 _reflns_shell.pdbx_netI_over_sigmaI_obs 0.9 _reflns_shell.pdbx_Rrim_I_all 1.905 _reflns_shell.pdbx_Rpim_I_all 0.763 _reflns_shell.pdbx_CC_half 0.394 _reflns_shell.percent_possible_all ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? # _refine.entry_id 13UD _refine.ls_percent_reflns_R_free 7.83 _refine.pdbx_overall_phase_error 24.3625 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_R_factor_obs 0.2174 _refine.B_iso_mean 42.00 _refine.ls_number_reflns_R_free 1778 _refine.ls_percent_reflns_obs 99.89 _refine.ls_R_factor_R_work 0.2151 _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_d_res_high 1.61 _refine.ls_number_reflns_obs 22719 _refine.pdbx_ls_sigma_F 1.36 _refine.ls_number_reflns_R_work 20941 _refine.ls_d_res_low 36.76 _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.ls_R_factor_R_free 0.2441 _refine.overall_SU_ML 0.2434 _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_diffrn_id 1 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_ion_probe_radii ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1265 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 1343 _refine_hist.d_res_high 1.61 _refine_hist.d_res_low 36.76 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.dev_ideal_target 'X-RAY DIFFRACTION' f_bond_d 1305 0.0123 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1767 1.4675 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 224 0.0750 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 217 0.0108 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 508 17.8218 ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' 1.61 1.66 1581 0.3682 99.48 0.3948 133 . . . . . 'X-RAY DIFFRACTION' 1.66 1.71 1592 0.3135 99.94 0.3563 136 . . . . . 'X-RAY DIFFRACTION' 1.71 1.76 1567 0.2759 100.00 0.3034 134 . . . . . 'X-RAY DIFFRACTION' 1.76 1.82 1580 0.2464 99.94 0.2636 133 . . . . . 'X-RAY DIFFRACTION' 1.82 1.90 1611 0.2434 99.94 0.2732 138 . . . . . 'X-RAY DIFFRACTION' 1.90 1.98 1572 0.2595 99.88 0.3229 134 . . . . . 'X-RAY DIFFRACTION' 1.98 2.09 1608 0.2150 100.00 0.2840 137 . . . . . 'X-RAY DIFFRACTION' 2.09 2.22 1587 0.1923 99.94 0.2342 134 . . . . . 'X-RAY DIFFRACTION' 2.22 2.39 1618 0.1929 100.00 0.2365 138 . . . . . 'X-RAY DIFFRACTION' 2.39 2.63 1613 0.2020 99.94 0.2679 136 . . . . . 'X-RAY DIFFRACTION' 2.63 3.01 1622 0.2134 100.00 0.2390 138 . . . . . 'X-RAY DIFFRACTION' 3.01 3.79 1644 0.2019 99.72 0.2445 140 . . . . . 'X-RAY DIFFRACTION' 3.79 36.76 1746 0.2099 99.79 0.2064 147 . . . . . # _struct.entry_id 13UD _struct.title 'Orf9b homodimer in complex with fragment ZINC000000404753' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 13UD _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'Homodimer, SARS-CoV-2, Innate immunity, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ORF9B_SARS2 _struct_ref.pdbx_db_accession P0DTD2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDPKISEMHPALRLVDPQIQLAVTRMENAVGRDQNNVGPKVYPIILRLGSPLSLNMARKTLNSLEDKAFQLTPIAVQMTK LATTEELPDEFVVVTVK ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 13UD A 1 ? 97 ? P0DTD2 1 ? 97 ? 1 97 2 1 13UD B 1 ? 97 ? P0DTD2 1 ? 97 ? 1 97 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4300 ? 1 MORE -6 ? 1 'SSA (A^2)' 9240 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 4 ? MET A 8 ? LYS A 4 MET A 8 5 ? 5 HELX_P HELX_P2 AA2 THR A 83 ? LEU A 87 ? THR A 83 LEU A 87 5 ? 5 HELX_P HELX_P3 AA3 THR B 83 ? LEU B 87 ? THR B 83 LEU B 87 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 HIS 9 A . ? HIS 9 A PRO 10 A ? PRO 10 A 1 2.04 2 HIS 9 B . ? HIS 9 B PRO 10 B ? PRO 10 B 1 -2.83 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 4 ? AA3 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MET A 78 ? THR A 79 ? MET A 78 THR A 79 AA1 2 LEU A 12 ? VAL A 15 ? LEU A 12 VAL A 15 AA1 3 ILE A 44 ? LEU A 48 ? ILE A 44 LEU A 48 AA1 4 GLU A 90 ? VAL A 96 ? GLU A 90 VAL A 96 AA1 5 LEU B 52 ? ASN B 62 ? LEU B 52 ASN B 62 AA1 6 LYS B 67 ? PRO B 73 ? LYS B 67 PRO B 73 AA2 1 LYS A 40 ? TYR A 42 ? LYS A 40 TYR A 42 AA2 2 ILE A 19 ? VAL A 23 ? ILE A 19 VAL A 23 AA2 3 ILE B 19 ? VAL B 23 ? ILE B 19 VAL B 23 AA2 4 LYS B 40 ? TYR B 42 ? LYS B 40 TYR B 42 AA3 1 ALA A 68 ? ILE A 74 ? ALA A 68 ILE A 74 AA3 2 SER A 53 ? LEU A 61 ? SER A 53 LEU A 61 AA3 3 GLU B 90 ? VAL B 96 ? GLU B 90 VAL B 96 AA3 4 ILE B 44 ? LEU B 48 ? ILE B 44 LEU B 48 AA3 5 ARG B 13 ? VAL B 15 ? ARG B 13 VAL B 15 AA3 6 MET B 78 ? LYS B 80 ? MET B 78 LYS B 80 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O THR A 79 ? O THR A 79 N LEU A 14 ? N LEU A 14 AA1 2 3 N ARG A 13 ? N ARG A 13 O LEU A 46 ? O LEU A 46 AA1 3 4 N ILE A 45 ? N ILE A 45 O VAL A 92 ? O VAL A 92 AA1 4 5 N PHE A 91 ? N PHE A 91 O ALA B 57 ? O ALA B 57 AA1 5 6 N MET B 56 ? N MET B 56 O THR B 72 ? O THR B 72 AA2 1 2 O LYS A 40 ? O LYS A 40 N VAL A 23 ? N VAL A 23 AA2 2 3 N ALA A 22 ? N ALA A 22 O GLN B 20 ? O GLN B 20 AA2 3 4 N VAL B 23 ? N VAL B 23 O LYS B 40 ? O LYS B 40 AA3 1 2 O THR A 72 ? O THR A 72 N MET A 56 ? N MET A 56 AA3 2 3 N ALA A 57 ? N ALA A 57 O PHE B 91 ? O PHE B 91 AA3 3 4 O VAL B 96 ? O VAL B 96 N ARG B 47 ? N ARG B 47 AA3 4 5 O LEU B 46 ? O LEU B 46 N ARG B 13 ? N ARG B 13 AA3 5 6 N LEU B 14 ? N LEU B 14 O THR B 79 ? O THR B 79 # _pdbx_entry_details.entry_id 13UD _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HO1 B BRB 101 ? ? O B HOH 203 ? ? 1.60 2 1 O1 B BRB 101 ? ? O B HOH 201 ? ? 1.80 3 1 O B THR 24 ? ? O B HOH 202 ? ? 1.95 4 1 O1 B BRB 101 ? ? O B HOH 203 ? ? 1.98 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 66 ? ? -153.48 70.69 2 1 ASP B 16 ? ? -36.07 121.39 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 8.1429100303 _pdbx_refine_tls.origin_y -1.04945197057 _pdbx_refine_tls.origin_z -4.23963568531 _pdbx_refine_tls.T[1][1] 0.192189985622 _pdbx_refine_tls.T[2][2] 0.189104421356 _pdbx_refine_tls.T[3][3] 0.190127952406 _pdbx_refine_tls.T[1][2] 0.0231839554556 _pdbx_refine_tls.T[1][3] -0.0138739507055 _pdbx_refine_tls.T[2][3] 0.0488286046865 _pdbx_refine_tls.L[1][1] 0.927986327103 _pdbx_refine_tls.L[2][2] 2.85910433709 _pdbx_refine_tls.L[3][3] 2.97188497401 _pdbx_refine_tls.L[1][2] -0.730495384477 _pdbx_refine_tls.L[1][3] -0.787885746989 _pdbx_refine_tls.L[2][3] 1.87196192438 _pdbx_refine_tls.S[1][1] -0.0580362698921 _pdbx_refine_tls.S[1][2] 0.013269484434 _pdbx_refine_tls.S[1][3] -0.0076211844648 _pdbx_refine_tls.S[2][1] 0.113813303379 _pdbx_refine_tls.S[2][2] -0.0288442067838 _pdbx_refine_tls.S[2][3] -0.039770755907 _pdbx_refine_tls.S[3][1] 0.458762981937 _pdbx_refine_tls.S[3][2] 0.00148778937485 _pdbx_refine_tls.S[3][3] 0.105785087943 # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id B _pdbx_refine_tls_group.end_auth_seq_id 102 _pdbx_refine_tls_group.end_label_asym_id E _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection . _pdbx_refine_tls_group.selection_details all # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 26 ? A MET 26 2 1 Y 1 A GLU 27 ? A GLU 27 3 1 Y 1 A ASN 28 ? A ASN 28 4 1 Y 1 A ALA 29 ? A ALA 29 5 1 Y 1 A VAL 30 ? A VAL 30 6 1 Y 1 A GLY 31 ? A GLY 31 7 1 Y 1 A ARG 32 ? A ARG 32 8 1 Y 1 A ASP 33 ? A ASP 33 9 1 Y 1 A GLN 34 ? A GLN 34 10 1 Y 1 A ASN 35 ? A ASN 35 11 1 Y 1 A ASN 36 ? A ASN 36 12 1 Y 1 A VAL 37 ? A VAL 37 13 1 Y 1 A GLY 38 ? A GLY 38 14 1 Y 1 B MET 1 ? B MET 1 15 1 Y 1 B ASP 2 ? B ASP 2 16 1 Y 1 B PRO 3 ? B PRO 3 17 1 Y 1 B LYS 4 ? B LYS 4 18 1 Y 1 B ARG 25 ? B ARG 25 19 1 Y 1 B MET 26 ? B MET 26 20 1 Y 1 B GLU 27 ? B GLU 27 21 1 Y 1 B ASN 28 ? B ASN 28 22 1 Y 1 B ALA 29 ? B ALA 29 23 1 Y 1 B VAL 30 ? B VAL 30 24 1 Y 1 B GLY 31 ? B GLY 31 25 1 Y 1 B ARG 32 ? B ARG 32 26 1 Y 1 B ASP 33 ? B ASP 33 27 1 Y 1 B GLN 34 ? B GLN 34 28 1 Y 1 B ASN 35 ? B ASN 35 29 1 Y 1 B ASN 36 ? B ASN 36 30 1 Y 1 B VAL 37 ? B VAL 37 31 1 Y 1 B GLY 38 ? B GLY 38 32 1 Y 1 B LYS 97 ? B LYS 97 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BRB C1 C Y N 74 BRB C2 C Y N 75 BRB C3 C Y N 76 BRB C4 C Y N 77 BRB C5 C Y N 78 BRB C6 C Y N 79 BRB C7 C N N 80 BRB BR4 BR N N 81 BRB O1 O N N 82 BRB H2 H N N 83 BRB H3 H N N 84 BRB H5 H N N 85 BRB H6 H N N 86 BRB H71 H N N 87 BRB H72 H N N 88 BRB HO1 H N N 89 D10 C1 C N N 90 D10 C2 C N N 91 D10 C3 C N N 92 D10 C4 C N N 93 D10 C5 C N N 94 D10 C6 C N N 95 D10 C7 C N N 96 D10 C8 C N N 97 D10 C9 C N N 98 D10 C10 C N N 99 D10 H11 H N N 100 D10 H12 H N N 101 D10 H13 H N N 102 D10 H21 H N N 103 D10 H22 H N N 104 D10 H31 H N N 105 D10 H32 H N N 106 D10 H41 H N N 107 D10 H42 H N N 108 D10 H51 H N N 109 D10 H52 H N N 110 D10 H61 H N N 111 D10 H62 H N N 112 D10 H71 H N N 113 D10 H72 H N N 114 D10 H81 H N N 115 D10 H82 H N N 116 D10 H91 H N N 117 D10 H92 H N N 118 D10 H101 H N N 119 D10 H102 H N N 120 D10 H103 H N N 121 DMS S S N N 122 DMS O O N N 123 DMS C1 C N N 124 DMS C2 C N N 125 DMS H11 H N N 126 DMS H12 H N N 127 DMS H13 H N N 128 DMS H21 H N N 129 DMS H22 H N N 130 DMS H23 H N N 131 GLN N N N N 132 GLN CA C N S 133 GLN C C N N 134 GLN O O N N 135 GLN CB C N N 136 GLN CG C N N 137 GLN CD C N N 138 GLN OE1 O N N 139 GLN NE2 N N N 140 GLN OXT O N N 141 GLN H H N N 142 GLN H2 H N N 143 GLN HA H N N 144 GLN HB2 H N N 145 GLN HB3 H N N 146 GLN HG2 H N N 147 GLN HG3 H N N 148 GLN HE21 H N N 149 GLN HE22 H N N 150 GLN HXT H N N 151 GLU N N N N 152 GLU CA C N S 153 GLU C C N N 154 GLU O O N N 155 GLU CB C N N 156 GLU CG C N N 157 GLU CD C N N 158 GLU OE1 O N N 159 GLU OE2 O N N 160 GLU OXT O N N 161 GLU H H N N 162 GLU H2 H N N 163 GLU HA H N N 164 GLU HB2 H N N 165 GLU HB3 H N N 166 GLU HG2 H N N 167 GLU HG3 H N N 168 GLU HE2 H N N 169 GLU HXT H N N 170 GLY N N N N 171 GLY CA C N N 172 GLY C C N N 173 GLY O O N N 174 GLY OXT O N N 175 GLY H H N N 176 GLY H2 H N N 177 GLY HA2 H N N 178 GLY HA3 H N N 179 GLY HXT H N N 180 HIS N N N N 181 HIS CA C N S 182 HIS C C N N 183 HIS O O N N 184 HIS CB C N N 185 HIS CG C Y N 186 HIS ND1 N Y N 187 HIS CD2 C Y N 188 HIS CE1 C Y N 189 HIS NE2 N Y N 190 HIS OXT O N N 191 HIS H H N N 192 HIS H2 H N N 193 HIS HA H N N 194 HIS HB2 H N N 195 HIS HB3 H N N 196 HIS HD1 H N N 197 HIS HD2 H N N 198 HIS HE1 H N N 199 HIS HE2 H N N 200 HIS HXT H N N 201 HOH O O N N 202 HOH H1 H N N 203 HOH H2 H N N 204 ILE N N N N 205 ILE CA C N S 206 ILE C C N N 207 ILE O O N N 208 ILE CB C N S 209 ILE CG1 C N N 210 ILE CG2 C N N 211 ILE CD1 C N N 212 ILE OXT O N N 213 ILE H H N N 214 ILE H2 H N N 215 ILE HA H N N 216 ILE HB H N N 217 ILE HG12 H N N 218 ILE HG13 H N N 219 ILE HG21 H N N 220 ILE HG22 H N N 221 ILE HG23 H N N 222 ILE HD11 H N N 223 ILE HD12 H N N 224 ILE HD13 H N N 225 ILE HXT H N N 226 LEU N N N N 227 LEU CA C N S 228 LEU C C N N 229 LEU O O N N 230 LEU CB C N N 231 LEU CG C N N 232 LEU CD1 C N N 233 LEU CD2 C N N 234 LEU OXT O N N 235 LEU H H N N 236 LEU H2 H N N 237 LEU HA H N N 238 LEU HB2 H N N 239 LEU HB3 H N N 240 LEU HG H N N 241 LEU HD11 H N N 242 LEU HD12 H N N 243 LEU HD13 H N N 244 LEU HD21 H N N 245 LEU HD22 H N N 246 LEU HD23 H N N 247 LEU HXT H N N 248 LYS N N N N 249 LYS CA C N S 250 LYS C C N N 251 LYS O O N N 252 LYS CB C N N 253 LYS CG C N N 254 LYS CD C N N 255 LYS CE C N N 256 LYS NZ N N N 257 LYS OXT O N N 258 LYS H H N N 259 LYS H2 H N N 260 LYS HA H N N 261 LYS HB2 H N N 262 LYS HB3 H N N 263 LYS HG2 H N N 264 LYS HG3 H N N 265 LYS HD2 H N N 266 LYS HD3 H N N 267 LYS HE2 H N N 268 LYS HE3 H N N 269 LYS HZ1 H N N 270 LYS HZ2 H N N 271 LYS HZ3 H N N 272 LYS HXT H N N 273 MET N N N N 274 MET CA C N S 275 MET C C N N 276 MET O O N N 277 MET CB C N N 278 MET CG C N N 279 MET SD S N N 280 MET CE C N N 281 MET OXT O N N 282 MET H H N N 283 MET H2 H N N 284 MET HA H N N 285 MET HB2 H N N 286 MET HB3 H N N 287 MET HG2 H N N 288 MET HG3 H N N 289 MET HE1 H N N 290 MET HE2 H N N 291 MET HE3 H N N 292 MET HXT H N N 293 PHE N N N N 294 PHE CA C N S 295 PHE C C N N 296 PHE O O N N 297 PHE CB C N N 298 PHE CG C Y N 299 PHE CD1 C Y N 300 PHE CD2 C Y N 301 PHE CE1 C Y N 302 PHE CE2 C Y N 303 PHE CZ C Y N 304 PHE OXT O N N 305 PHE H H N N 306 PHE H2 H N N 307 PHE HA H N N 308 PHE HB2 H N N 309 PHE HB3 H N N 310 PHE HD1 H N N 311 PHE HD2 H N N 312 PHE HE1 H N N 313 PHE HE2 H N N 314 PHE HZ H N N 315 PHE HXT H N N 316 PRO N N N N 317 PRO CA C N S 318 PRO C C N N 319 PRO O O N N 320 PRO CB C N N 321 PRO CG C N N 322 PRO CD C N N 323 PRO OXT O N N 324 PRO H H N N 325 PRO HA H N N 326 PRO HB2 H N N 327 PRO HB3 H N N 328 PRO HG2 H N N 329 PRO HG3 H N N 330 PRO HD2 H N N 331 PRO HD3 H N N 332 PRO HXT H N N 333 SER N N N N 334 SER CA C N S 335 SER C C N N 336 SER O O N N 337 SER CB C N N 338 SER OG O N N 339 SER OXT O N N 340 SER H H N N 341 SER H2 H N N 342 SER HA H N N 343 SER HB2 H N N 344 SER HB3 H N N 345 SER HG H N N 346 SER HXT H N N 347 THR N N N N 348 THR CA C N S 349 THR C C N N 350 THR O O N N 351 THR CB C N R 352 THR OG1 O N N 353 THR CG2 C N N 354 THR OXT O N N 355 THR H H N N 356 THR H2 H N N 357 THR HA H N N 358 THR HB H N N 359 THR HG1 H N N 360 THR HG21 H N N 361 THR HG22 H N N 362 THR HG23 H N N 363 THR HXT H N N 364 TYR N N N N 365 TYR CA C N S 366 TYR C C N N 367 TYR O O N N 368 TYR CB C N N 369 TYR CG C Y N 370 TYR CD1 C Y N 371 TYR CD2 C Y N 372 TYR CE1 C Y N 373 TYR CE2 C Y N 374 TYR CZ C Y N 375 TYR OH O N N 376 TYR OXT O N N 377 TYR H H N N 378 TYR H2 H N N 379 TYR HA H N N 380 TYR HB2 H N N 381 TYR HB3 H N N 382 TYR HD1 H N N 383 TYR HD2 H N N 384 TYR HE1 H N N 385 TYR HE2 H N N 386 TYR HH H N N 387 TYR HXT H N N 388 VAL N N N N 389 VAL CA C N S 390 VAL C C N N 391 VAL O O N N 392 VAL CB C N N 393 VAL CG1 C N N 394 VAL CG2 C N N 395 VAL OXT O N N 396 VAL H H N N 397 VAL H2 H N N 398 VAL HA H N N 399 VAL HB H N N 400 VAL HG11 H N N 401 VAL HG12 H N N 402 VAL HG13 H N N 403 VAL HG21 H N N 404 VAL HG22 H N N 405 VAL HG23 H N N 406 VAL HXT H N N 407 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BRB C1 C2 doub Y N 70 BRB C1 C6 sing Y N 71 BRB C1 C7 sing N N 72 BRB C2 C3 sing Y N 73 BRB C2 H2 sing N N 74 BRB C3 C4 doub Y N 75 BRB C3 H3 sing N N 76 BRB C4 C5 sing Y N 77 BRB C4 BR4 sing N N 78 BRB C5 C6 doub Y N 79 BRB C5 H5 sing N N 80 BRB C6 H6 sing N N 81 BRB C7 O1 sing N N 82 BRB C7 H71 sing N N 83 BRB C7 H72 sing N N 84 BRB O1 HO1 sing N N 85 D10 C1 C2 sing N N 86 D10 C1 H11 sing N N 87 D10 C1 H12 sing N N 88 D10 C1 H13 sing N N 89 D10 C2 C3 sing N N 90 D10 C2 H21 sing N N 91 D10 C2 H22 sing N N 92 D10 C3 C4 sing N N 93 D10 C3 H31 sing N N 94 D10 C3 H32 sing N N 95 D10 C4 C5 sing N N 96 D10 C4 H41 sing N N 97 D10 C4 H42 sing N N 98 D10 C5 C6 sing N N 99 D10 C5 H51 sing N N 100 D10 C5 H52 sing N N 101 D10 C6 C7 sing N N 102 D10 C6 H61 sing N N 103 D10 C6 H62 sing N N 104 D10 C7 C8 sing N N 105 D10 C7 H71 sing N N 106 D10 C7 H72 sing N N 107 D10 C8 C9 sing N N 108 D10 C8 H81 sing N N 109 D10 C8 H82 sing N N 110 D10 C9 C10 sing N N 111 D10 C9 H91 sing N N 112 D10 C9 H92 sing N N 113 D10 C10 H101 sing N N 114 D10 C10 H102 sing N N 115 D10 C10 H103 sing N N 116 DMS S O doub N N 117 DMS S C1 sing N N 118 DMS S C2 sing N N 119 DMS C1 H11 sing N N 120 DMS C1 H12 sing N N 121 DMS C1 H13 sing N N 122 DMS C2 H21 sing N N 123 DMS C2 H22 sing N N 124 DMS C2 H23 sing N N 125 GLN N CA sing N N 126 GLN N H sing N N 127 GLN N H2 sing N N 128 GLN CA C sing N N 129 GLN CA CB sing N N 130 GLN CA HA sing N N 131 GLN C O doub N N 132 GLN C OXT sing N N 133 GLN CB CG sing N N 134 GLN CB HB2 sing N N 135 GLN CB HB3 sing N N 136 GLN CG CD sing N N 137 GLN CG HG2 sing N N 138 GLN CG HG3 sing N N 139 GLN CD OE1 doub N N 140 GLN CD NE2 sing N N 141 GLN NE2 HE21 sing N N 142 GLN NE2 HE22 sing N N 143 GLN OXT HXT sing N N 144 GLU N CA sing N N 145 GLU N H sing N N 146 GLU N H2 sing N N 147 GLU CA C sing N N 148 GLU CA CB sing N N 149 GLU CA HA sing N N 150 GLU C O doub N N 151 GLU C OXT sing N N 152 GLU CB CG sing N N 153 GLU CB HB2 sing N N 154 GLU CB HB3 sing N N 155 GLU CG CD sing N N 156 GLU CG HG2 sing N N 157 GLU CG HG3 sing N N 158 GLU CD OE1 doub N N 159 GLU CD OE2 sing N N 160 GLU OE2 HE2 sing N N 161 GLU OXT HXT sing N N 162 GLY N CA sing N N 163 GLY N H sing N N 164 GLY N H2 sing N N 165 GLY CA C sing N N 166 GLY CA HA2 sing N N 167 GLY CA HA3 sing N N 168 GLY C O doub N N 169 GLY C OXT sing N N 170 GLY OXT HXT sing N N 171 HIS N CA sing N N 172 HIS N H sing N N 173 HIS N H2 sing N N 174 HIS CA C sing N N 175 HIS CA CB sing N N 176 HIS CA HA sing N N 177 HIS C O doub N N 178 HIS C OXT sing N N 179 HIS CB CG sing N N 180 HIS CB HB2 sing N N 181 HIS CB HB3 sing N N 182 HIS CG ND1 sing Y N 183 HIS CG CD2 doub Y N 184 HIS ND1 CE1 doub Y N 185 HIS ND1 HD1 sing N N 186 HIS CD2 NE2 sing Y N 187 HIS CD2 HD2 sing N N 188 HIS CE1 NE2 sing Y N 189 HIS CE1 HE1 sing N N 190 HIS NE2 HE2 sing N N 191 HIS OXT HXT sing N N 192 HOH O H1 sing N N 193 HOH O H2 sing N N 194 ILE N CA sing N N 195 ILE N H sing N N 196 ILE N H2 sing N N 197 ILE CA C sing N N 198 ILE CA CB sing N N 199 ILE CA HA sing N N 200 ILE C O doub N N 201 ILE C OXT sing N N 202 ILE CB CG1 sing N N 203 ILE CB CG2 sing N N 204 ILE CB HB sing N N 205 ILE CG1 CD1 sing N N 206 ILE CG1 HG12 sing N N 207 ILE CG1 HG13 sing N N 208 ILE CG2 HG21 sing N N 209 ILE CG2 HG22 sing N N 210 ILE CG2 HG23 sing N N 211 ILE CD1 HD11 sing N N 212 ILE CD1 HD12 sing N N 213 ILE CD1 HD13 sing N N 214 ILE OXT HXT sing N N 215 LEU N CA sing N N 216 LEU N H sing N N 217 LEU N H2 sing N N 218 LEU CA C sing N N 219 LEU CA CB sing N N 220 LEU CA HA sing N N 221 LEU C O doub N N 222 LEU C OXT sing N N 223 LEU CB CG sing N N 224 LEU CB HB2 sing N N 225 LEU CB HB3 sing N N 226 LEU CG CD1 sing N N 227 LEU CG CD2 sing N N 228 LEU CG HG sing N N 229 LEU CD1 HD11 sing N N 230 LEU CD1 HD12 sing N N 231 LEU CD1 HD13 sing N N 232 LEU CD2 HD21 sing N N 233 LEU CD2 HD22 sing N N 234 LEU CD2 HD23 sing N N 235 LEU OXT HXT sing N N 236 LYS N CA sing N N 237 LYS N H sing N N 238 LYS N H2 sing N N 239 LYS CA C sing N N 240 LYS CA CB sing N N 241 LYS CA HA sing N N 242 LYS C O doub N N 243 LYS C OXT sing N N 244 LYS CB CG sing N N 245 LYS CB HB2 sing N N 246 LYS CB HB3 sing N N 247 LYS CG CD sing N N 248 LYS CG HG2 sing N N 249 LYS CG HG3 sing N N 250 LYS CD CE sing N N 251 LYS CD HD2 sing N N 252 LYS CD HD3 sing N N 253 LYS CE NZ sing N N 254 LYS CE HE2 sing N N 255 LYS CE HE3 sing N N 256 LYS NZ HZ1 sing N N 257 LYS NZ HZ2 sing N N 258 LYS NZ HZ3 sing N N 259 LYS OXT HXT sing N N 260 MET N CA sing N N 261 MET N H sing N N 262 MET N H2 sing N N 263 MET CA C sing N N 264 MET CA CB sing N N 265 MET CA HA sing N N 266 MET C O doub N N 267 MET C OXT sing N N 268 MET CB CG sing N N 269 MET CB HB2 sing N N 270 MET CB HB3 sing N N 271 MET CG SD sing N N 272 MET CG HG2 sing N N 273 MET CG HG3 sing N N 274 MET SD CE sing N N 275 MET CE HE1 sing N N 276 MET CE HE2 sing N N 277 MET CE HE3 sing N N 278 MET OXT HXT sing N N 279 PHE N CA sing N N 280 PHE N H sing N N 281 PHE N H2 sing N N 282 PHE CA C sing N N 283 PHE CA CB sing N N 284 PHE CA HA sing N N 285 PHE C O doub N N 286 PHE C OXT sing N N 287 PHE CB CG sing N N 288 PHE CB HB2 sing N N 289 PHE CB HB3 sing N N 290 PHE CG CD1 doub Y N 291 PHE CG CD2 sing Y N 292 PHE CD1 CE1 sing Y N 293 PHE CD1 HD1 sing N N 294 PHE CD2 CE2 doub Y N 295 PHE CD2 HD2 sing N N 296 PHE CE1 CZ doub Y N 297 PHE CE1 HE1 sing N N 298 PHE CE2 CZ sing Y N 299 PHE CE2 HE2 sing N N 300 PHE CZ HZ sing N N 301 PHE OXT HXT sing N N 302 PRO N CA sing N N 303 PRO N CD sing N N 304 PRO N H sing N N 305 PRO CA C sing N N 306 PRO CA CB sing N N 307 PRO CA HA sing N N 308 PRO C O doub N N 309 PRO C OXT sing N N 310 PRO CB CG sing N N 311 PRO CB HB2 sing N N 312 PRO CB HB3 sing N N 313 PRO CG CD sing N N 314 PRO CG HG2 sing N N 315 PRO CG HG3 sing N N 316 PRO CD HD2 sing N N 317 PRO CD HD3 sing N N 318 PRO OXT HXT sing N N 319 SER N CA sing N N 320 SER N H sing N N 321 SER N H2 sing N N 322 SER CA C sing N N 323 SER CA CB sing N N 324 SER CA HA sing N N 325 SER C O doub N N 326 SER C OXT sing N N 327 SER CB OG sing N N 328 SER CB HB2 sing N N 329 SER CB HB3 sing N N 330 SER OG HG sing N N 331 SER OXT HXT sing N N 332 THR N CA sing N N 333 THR N H sing N N 334 THR N H2 sing N N 335 THR CA C sing N N 336 THR CA CB sing N N 337 THR CA HA sing N N 338 THR C O doub N N 339 THR C OXT sing N N 340 THR CB OG1 sing N N 341 THR CB CG2 sing N N 342 THR CB HB sing N N 343 THR OG1 HG1 sing N N 344 THR CG2 HG21 sing N N 345 THR CG2 HG22 sing N N 346 THR CG2 HG23 sing N N 347 THR OXT HXT sing N N 348 TYR N CA sing N N 349 TYR N H sing N N 350 TYR N H2 sing N N 351 TYR CA C sing N N 352 TYR CA CB sing N N 353 TYR CA HA sing N N 354 TYR C O doub N N 355 TYR C OXT sing N N 356 TYR CB CG sing N N 357 TYR CB HB2 sing N N 358 TYR CB HB3 sing N N 359 TYR CG CD1 doub Y N 360 TYR CG CD2 sing Y N 361 TYR CD1 CE1 sing Y N 362 TYR CD1 HD1 sing N N 363 TYR CD2 CE2 doub Y N 364 TYR CD2 HD2 sing N N 365 TYR CE1 CZ doub Y N 366 TYR CE1 HE1 sing N N 367 TYR CE2 CZ sing Y N 368 TYR CE2 HE2 sing N N 369 TYR CZ OH sing N N 370 TYR OH HH sing N N 371 TYR OXT HXT sing N N 372 VAL N CA sing N N 373 VAL N H sing N N 374 VAL N H2 sing N N 375 VAL CA C sing N N 376 VAL CA CB sing N N 377 VAL CA HA sing N N 378 VAL C O doub N N 379 VAL C OXT sing N N 380 VAL CB CG1 sing N N 381 VAL CB CG2 sing N N 382 VAL CB HB sing N N 383 VAL CG1 HG11 sing N N 384 VAL CG1 HG12 sing N N 385 VAL CG1 HG13 sing N N 386 VAL CG2 HG21 sing N N 387 VAL CG2 HG22 sing N N 388 VAL CG2 HG23 sing N N 389 VAL OXT HXT sing N N 390 # _em_software.id 1 _em_software.name PHENIX _em_software.version 1.21.1_5286 _em_software.category 'MODEL REFINEMENT' _em_software.details . # _pdbx_audit_support.ordinal 1 _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number U19AI171110 # _pdbx_deposit_group.group_id G_1002357 _pdbx_deposit_group.group_title 'PanDDA analysis group deposition of SARS-CoV-2 Orf9b homodimer fragment screen' _pdbx_deposit_group.group_description 'SARS-CoV-2 Orf9b homodimer in complex with ligands identified by X-ray diffraction using ALS 8.3.1' _pdbx_deposit_group.group_type undefined # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 13UD _atom_sites.fract_transf_matrix[1][1] 0.027908 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015410 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013601 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source BR ? ? 25.79822 9.11301 ? ? 1.35700 25.34896 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #