HEADER HYDROLASE 17-SEP-25 13MT TITLE PANDDA ANALYSIS GROUP DEPOSITION -- CRYSTAL STRUCTURE OF PLPRO-C111S TITLE 2 IN COMPLEX WITH FR14022 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAPAIN-LIKE PROTEASE NSP3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 3,NSP3,PL2-PRO,PAPAIN-LIKE COMPND 5 PROTEINASE,PL-PRO; COMPND 6 EC: 3.4.19.12,3.4.22.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PLPRO, SARS-COV-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,L.HUANG,Q.XU,Z.ZHU,M.LI,H.ZHOU,T.HAN,S.ZHENG,Q.WANG,F.YU REVDAT 1 18-FEB-26 13MT 0 JRNL AUTH W.W.WANG,L.Q.HUANG,Q.XU,Z.M.ZHU,M.LI,H.ZHOU,T.L.HAN, JRNL AUTH 2 S.H.ZHENG,J.LI,Q.S.WANG,F.YU JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING DISCOVERS NOVEL JRNL TITL 2 MICROMOLAR ACTIVE INHIBITORS AND DRUGGABLE HOTSPOTS OF JRNL TITL 3 SARS-COV-2 PL PRO. JRNL REF INT.J.BIOL.MACROMOL. V. 347 50689 2026 JRNL REFN ISSN 0141-8130 JRNL PMID 41638277 JRNL DOI 10.1016/J.IJBIOMAC.2026.150689 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 1872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0100 - 4.5600 1.00 3074 147 0.1539 0.1613 REMARK 3 2 4.5500 - 3.6200 1.00 2983 124 0.1378 0.1470 REMARK 3 3 3.6200 - 3.1600 1.00 2888 153 0.1631 0.1902 REMARK 3 4 3.1600 - 2.8700 1.00 2886 151 0.1986 0.2065 REMARK 3 5 2.8700 - 2.6700 1.00 2891 153 0.1971 0.1842 REMARK 3 6 2.6700 - 2.5100 1.00 2862 148 0.1953 0.2205 REMARK 3 7 2.5100 - 2.3800 1.00 2844 147 0.1932 0.2381 REMARK 3 8 2.3800 - 2.2800 1.00 2853 157 0.1900 0.2301 REMARK 3 9 2.2800 - 2.1900 1.00 2846 160 0.1951 0.2218 REMARK 3 10 2.1900 - 2.1200 1.00 2848 147 0.1994 0.2242 REMARK 3 11 2.1200 - 2.0500 1.00 2860 116 0.2193 0.2510 REMARK 3 12 2.0500 - 1.9900 1.00 2848 140 0.2317 0.2724 REMARK 3 13 1.9900 - 1.9400 1.00 2867 129 0.2585 0.3019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.344 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2564 REMARK 3 ANGLE : 0.564 3477 REMARK 3 CHIRALITY : 0.041 384 REMARK 3 PLANARITY : 0.004 444 REMARK 3 DIHEDRAL : 4.697 347 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2241 55.5255 16.4334 REMARK 3 T TENSOR REMARK 3 T11: 0.2949 T22: 0.4955 REMARK 3 T33: 0.3601 T12: -0.0264 REMARK 3 T13: 0.0360 T23: -0.0906 REMARK 3 L TENSOR REMARK 3 L11: 3.5024 L22: 2.9715 REMARK 3 L33: 3.0362 L12: 0.1122 REMARK 3 L13: -0.6313 L23: 0.0640 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: -0.5200 S13: 0.3740 REMARK 3 S21: 0.0798 S22: 0.2000 S23: -0.2281 REMARK 3 S31: -0.3816 S32: 0.2259 S33: -0.2181 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8362 40.8640 -3.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.2540 T22: 0.2233 REMARK 3 T33: 0.2684 T12: 0.0020 REMARK 3 T13: 0.0046 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.8614 L22: 1.6084 REMARK 3 L33: 4.2326 L12: -0.1577 REMARK 3 L13: 0.5949 L23: -0.0328 REMARK 3 S TENSOR REMARK 3 S11: 0.1011 S12: -0.1337 S13: -0.0294 REMARK 3 S21: -0.1124 S22: -0.0196 S23: 0.0223 REMARK 3 S31: -0.0212 S32: -0.0599 S33: -0.0806 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8088 15.3012 -15.4779 REMARK 3 T TENSOR REMARK 3 T11: 0.5933 T22: 0.3195 REMARK 3 T33: 0.5041 T12: 0.0496 REMARK 3 T13: -0.1433 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.9404 L22: 3.2013 REMARK 3 L33: 1.7730 L12: -1.0736 REMARK 3 L13: -0.7463 L23: 0.0311 REMARK 3 S TENSOR REMARK 3 S11: 0.1761 S12: -0.0114 S13: -0.6159 REMARK 3 S21: -0.2501 S22: -0.1887 S23: -0.0119 REMARK 3 S31: 0.5714 S32: 0.3017 S33: 0.0609 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9048 33.1096 -23.5705 REMARK 3 T TENSOR REMARK 3 T11: 0.4895 T22: 0.3105 REMARK 3 T33: 0.2840 T12: 0.0775 REMARK 3 T13: -0.0797 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 1.7410 L22: 4.1395 REMARK 3 L33: 1.7610 L12: -0.9750 REMARK 3 L13: -0.2139 L23: -0.4188 REMARK 3 S TENSOR REMARK 3 S11: 0.3111 S12: 0.3663 S13: -0.1523 REMARK 3 S21: -0.5556 S22: -0.1968 S23: 0.0142 REMARK 3 S31: 0.1710 S32: -0.0228 S33: -0.0904 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 13MT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1001409197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39478 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 39.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.90 REMARK 200 R MERGE FOR SHELL (I) : 2.05900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: DIMPLE REMARK 200 STARTING MODEL: 7CJM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM MALEATE PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.06667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.03333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.03333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 90.06667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 GLY A -35 REMARK 465 SER A -34 REMARK 465 SER A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 SER A -26 REMARK 465 SER A -25 REMARK 465 GLY A -24 REMARK 465 LEU A -23 REMARK 465 VAL A -22 REMARK 465 PRO A -21 REMARK 465 ARG A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 MET A -16 REMARK 465 ALA A -15 REMARK 465 SER A -14 REMARK 465 MET A -13 REMARK 465 THR A -12 REMARK 465 GLY A -11 REMARK 465 GLY A -10 REMARK 465 GLN A -9 REMARK 465 GLN A -8 REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 ARG A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 SER A -2 REMARK 465 LEU A -1 REMARK 465 ARG A 0 REMARK 465 GLU A 1 REMARK 465 LYS A 315 REMARK 465 HIS A 316 REMARK 465 VAL A 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 512 O HOH A 519 1.85 REMARK 500 O HOH A 681 O HOH A 703 1.87 REMARK 500 O HOH A 727 O HOH A 737 1.89 REMARK 500 O HOH A 601 O HOH A 668 1.97 REMARK 500 O HOH A 699 O HOH A 721 2.16 REMARK 500 O HOH A 564 O HOH A 705 2.19 REMARK 500 O HOH A 648 O HOH A 684 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 507 O HOH A 554 4555 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 14 -59.90 -122.16 REMARK 500 PRO A 59 83.49 -66.72 REMARK 500 ALA A 107 147.85 -171.30 REMARK 500 LYS A 279 -126.73 -118.53 REMARK 500 ASN A 308 -63.52 -140.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 754 DISTANCE = 5.82 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 189 SG REMARK 620 2 CYS A 192 SG 109.5 REMARK 620 3 CYS A 224 SG 111.7 107.6 REMARK 620 4 CYS A 226 SG 110.3 111.4 106.3 REMARK 620 N 1 2 3 DBREF 13MT A -2 317 UNP P0DTD1 R1AB_SARS2 1561 1880 SEQADV 13MT MET A -36 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT GLY A -35 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT SER A -34 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT SER A -33 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT HIS A -32 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT HIS A -31 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT HIS A -30 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT HIS A -29 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT HIS A -28 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT HIS A -27 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT SER A -26 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT SER A -25 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT GLY A -24 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT LEU A -23 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT VAL A -22 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT PRO A -21 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT ARG A -20 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT GLY A -19 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT SER A -18 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT HIS A -17 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT MET A -16 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT ALA A -15 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT SER A -14 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT MET A -13 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT THR A -12 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT GLY A -11 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT GLY A -10 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT GLN A -9 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT GLN A -8 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT MET A -7 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT GLY A -6 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT ARG A -5 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT GLY A -4 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT SER A -3 UNP P0DTD1 EXPRESSION TAG SEQADV 13MT SER A 111 UNP P0DTD1 CYS 1674 ENGINEERED MUTATION SEQADV 13MT HIS A 316 UNP P0DTD1 PRO 1879 CONFLICT SEQRES 1 A 354 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 354 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 354 GLY GLN GLN MET GLY ARG GLY SER SER LEU ARG GLU VAL SEQRES 4 A 354 ARG THR ILE LYS VAL PHE THR THR VAL ASP ASN ILE ASN SEQRES 5 A 354 LEU HIS THR GLN VAL VAL ASP MET SER MET THR TYR GLY SEQRES 6 A 354 GLN GLN PHE GLY PRO THR TYR LEU ASP GLY ALA ASP VAL SEQRES 7 A 354 THR LYS ILE LYS PRO HIS ASN SER HIS GLU GLY LYS THR SEQRES 8 A 354 PHE TYR VAL LEU PRO ASN ASP ASP THR LEU ARG VAL GLU SEQRES 9 A 354 ALA PHE GLU TYR TYR HIS THR THR ASP PRO SER PHE LEU SEQRES 10 A 354 GLY ARG TYR MET SER ALA LEU ASN HIS THR LYS LYS TRP SEQRES 11 A 354 LYS TYR PRO GLN VAL ASN GLY LEU THR SER ILE LYS TRP SEQRES 12 A 354 ALA ASP ASN ASN SER TYR LEU ALA THR ALA LEU LEU THR SEQRES 13 A 354 LEU GLN GLN ILE GLU LEU LYS PHE ASN PRO PRO ALA LEU SEQRES 14 A 354 GLN ASP ALA TYR TYR ARG ALA ARG ALA GLY GLU ALA ALA SEQRES 15 A 354 ASN PHE CYS ALA LEU ILE LEU ALA TYR CYS ASN LYS THR SEQRES 16 A 354 VAL GLY GLU LEU GLY ASP VAL ARG GLU THR MET SER TYR SEQRES 17 A 354 LEU PHE GLN HIS ALA ASN LEU ASP SER CYS LYS ARG VAL SEQRES 18 A 354 LEU ASN VAL VAL CYS LYS THR CYS GLY GLN GLN GLN THR SEQRES 19 A 354 THR LEU LYS GLY VAL GLU ALA VAL MET TYR MET GLY THR SEQRES 20 A 354 LEU SER TYR GLU GLN PHE LYS LYS GLY VAL GLN ILE PRO SEQRES 21 A 354 CYS THR CYS GLY LYS GLN ALA THR LYS TYR LEU VAL GLN SEQRES 22 A 354 GLN GLU SER PRO PHE VAL MET MET SER ALA PRO PRO ALA SEQRES 23 A 354 GLN TYR GLU LEU LYS HIS GLY THR PHE THR CYS ALA SER SEQRES 24 A 354 GLU TYR THR GLY ASN TYR GLN CYS GLY HIS TYR LYS HIS SEQRES 25 A 354 ILE THR SER LYS GLU THR LEU TYR CYS ILE ASP GLY ALA SEQRES 26 A 354 LEU LEU THR LYS SER SER GLU TYR LYS GLY PRO ILE THR SEQRES 27 A 354 ASP VAL PHE TYR LYS GLU ASN SER TYR THR THR THR ILE SEQRES 28 A 354 LYS HIS VAL HET ZN A 401 1 HET MLI A 402 7 HET MLI A 403 7 HET X4P A 404 10 HETNAM ZN ZINC ION HETNAM MLI MALONATE ION HETNAM X4P 2-CHLOROPYRIDINE-4-CARBOXAMIDE FORMUL 2 ZN ZN 2+ FORMUL 3 MLI 2(C3 H2 O4 2-) FORMUL 5 X4P C6 H5 CL N2 O FORMUL 6 HOH *254(H2 O) HELIX 1 AA1 THR A 26 GLY A 32 1 7 HELIX 2 AA2 HIS A 47 GLU A 51 5 5 HELIX 3 AA3 ASP A 61 HIS A 73 1 13 HELIX 4 AA4 SER A 78 LYS A 91 1 14 HELIX 5 AA5 ASN A 110 GLN A 121 1 12 HELIX 6 AA6 PRO A 129 ALA A 141 1 13 HELIX 7 AA7 ALA A 144 CYS A 155 1 12 HELIX 8 AA8 ASP A 164 HIS A 175 1 12 HELIX 9 AA9 GLY A 201 VAL A 205 1 5 HELIX 10 AB1 SER A 212 GLY A 219 1 8 SHEET 1 AA1 5 HIS A 17 ASP A 22 0 SHEET 2 AA1 5 THR A 4 THR A 10 -1 N VAL A 7 O GLN A 19 SHEET 3 AA1 5 THR A 54 VAL A 57 1 O PHE A 55 N PHE A 8 SHEET 4 AA1 5 THR A 34 LEU A 36 -1 N TYR A 35 O TYR A 56 SHEET 5 AA1 5 ALA A 39 ASP A 40 -1 O ALA A 39 N LEU A 36 SHEET 1 AA2 2 GLN A 97 VAL A 98 0 SHEET 2 AA2 2 LEU A 101 THR A 102 -1 O LEU A 101 N VAL A 98 SHEET 1 AA3 4 GLY A 193 LYS A 200 0 SHEET 2 AA3 4 LYS A 182 CYS A 189 -1 N ARG A 183 O LEU A 199 SHEET 3 AA3 4 GLN A 229 GLU A 238 -1 O VAL A 235 N VAL A 184 SHEET 4 AA3 4 VAL A 220 PRO A 223 -1 N ILE A 222 O ALA A 230 SHEET 1 AA4 4 GLY A 193 LYS A 200 0 SHEET 2 AA4 4 LYS A 182 CYS A 189 -1 N ARG A 183 O LEU A 199 SHEET 3 AA4 4 GLN A 229 GLU A 238 -1 O VAL A 235 N VAL A 184 SHEET 4 AA4 4 SER A 309 THR A 311 -1 O TYR A 310 N GLN A 237 SHEET 1 AA5 7 MET A 206 MET A 208 0 SHEET 2 AA5 7 PHE A 241 LEU A 253 1 O SER A 245 N TYR A 207 SHEET 3 AA5 7 TYR A 296 LYS A 306 -1 O VAL A 303 N MET A 244 SHEET 4 AA5 7 CYS A 260 GLY A 266 -1 N CYS A 260 O PHE A 304 SHEET 5 AA5 7 GLY A 271 SER A 278 -1 O LYS A 274 N GLU A 263 SHEET 6 AA5 7 LEU A 282 ASP A 286 -1 O ILE A 285 N HIS A 275 SHEET 7 AA5 7 LEU A 289 SER A 293 -1 O THR A 291 N CYS A 284 LINK SG CYS A 189 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 192 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 224 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 226 ZN ZN A 401 1555 1555 2.33 CRYST1 81.830 81.830 135.100 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012220 0.007055 0.000000 0.00000 SCALE2 0.000000 0.014111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007402 0.00000 CONECT 1504 2485 CONECT 1526 2485 CONECT 1773 2485 CONECT 1786 2485 CONECT 2485 1504 1526 1773 1786 CONECT 2486 2487 2488 CONECT 2487 2486 2489 2490 CONECT 2488 2486 2491 2492 CONECT 2489 2487 CONECT 2490 2487 CONECT 2491 2488 CONECT 2492 2488 CONECT 2493 2494 2495 CONECT 2494 2493 2496 2497 CONECT 2495 2493 2498 2499 CONECT 2496 2494 CONECT 2497 2494 CONECT 2498 2495 CONECT 2499 2495 CONECT 2500 2501 2506 2508 CONECT 2501 2500 2502 2505 CONECT 2502 2501 2503 CONECT 2503 2502 2507 CONECT 2504 2505 2507 2509 CONECT 2505 2501 2504 CONECT 2506 2500 CONECT 2507 2503 2504 CONECT 2508 2500 CONECT 2509 2504 MASTER 398 0 4 10 22 0 0 6 2762 1 29 28 END