HEADER HYDROLASE 17-SEP-25 13NN TITLE PANDDA ANALYSIS GROUP DEPOSITION -- CRYSTAL STRUCTURE OF PLPRO-C111S TITLE 2 IN COMPLEX WITH T0407 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAPAIN-LIKE PROTEASE NSP3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 3,NSP3,PL2-PRO,PAPAIN-LIKE COMPND 5 PROTEINASE,PL-PRO; COMPND 6 EC: 3.4.19.12,3.4.22.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PLPRO, SARS-COV-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,L.HUANG,Q.XU,Z.ZHU,M.LI,H.ZHOU,T.HAN,S.ZHENG,Q.WANG,F.YU REVDAT 1 18-FEB-26 13NN 0 JRNL AUTH W.W.WANG,L.Q.HUANG,Q.XU,Z.M.ZHU,M.LI,H.ZHOU,T.L.HAN, JRNL AUTH 2 S.H.ZHENG,J.LI,Q.S.WANG,F.YU JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING DISCOVERS NOVEL JRNL TITL 2 MICROMOLAR ACTIVE INHIBITORS AND DRUGGABLE HOTSPOTS OF JRNL TITL 3 SARS-COV-2 PL PRO. JRNL REF INT.J.BIOL.MACROMOL. V. 347 50689 2026 JRNL REFN ISSN 0141-8130 JRNL PMID 41638277 JRNL DOI 10.1016/J.IJBIOMAC.2026.150689 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8500 - 4.7000 1.00 2855 138 0.1600 0.1850 REMARK 3 2 4.7000 - 3.7300 1.00 2726 120 0.1502 0.1689 REMARK 3 3 3.7300 - 3.2600 1.00 2690 137 0.1867 0.2654 REMARK 3 4 3.2600 - 2.9600 1.00 2666 139 0.2450 0.2926 REMARK 3 5 2.9600 - 2.7500 1.00 2649 137 0.2409 0.3188 REMARK 3 6 2.7500 - 2.5900 1.00 2654 136 0.2829 0.2927 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.311 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.349 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2584 REMARK 3 ANGLE : 0.541 3509 REMARK 3 CHIRALITY : 0.039 385 REMARK 3 PLANARITY : 0.003 449 REMARK 3 DIHEDRAL : 5.939 357 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5982 55.9277 16.8219 REMARK 3 T TENSOR REMARK 3 T11: 0.6322 T22: 0.5110 REMARK 3 T33: 0.5769 T12: -0.0669 REMARK 3 T13: -0.0286 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 3.8534 L22: 3.0553 REMARK 3 L33: 4.6158 L12: 1.3188 REMARK 3 L13: -0.4367 L23: 1.4289 REMARK 3 S TENSOR REMARK 3 S11: 0.0995 S12: -0.2158 S13: 0.2485 REMARK 3 S21: 0.2109 S22: 0.0558 S23: -0.4274 REMARK 3 S31: -0.3551 S32: 0.0154 S33: -0.1225 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2910 42.3245 -1.9576 REMARK 3 T TENSOR REMARK 3 T11: 0.4176 T22: 0.3895 REMARK 3 T33: 0.4473 T12: -0.0225 REMARK 3 T13: 0.0114 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 2.4706 L22: 1.8073 REMARK 3 L33: 4.6080 L12: -0.4890 REMARK 3 L13: 1.4042 L23: -0.0152 REMARK 3 S TENSOR REMARK 3 S11: -0.0767 S12: 0.1678 S13: 0.1435 REMARK 3 S21: 0.1488 S22: 0.0446 S23: 0.0811 REMARK 3 S31: -0.1600 S32: 0.0233 S33: 0.0460 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2199 21.9504 -15.2097 REMARK 3 T TENSOR REMARK 3 T11: 0.6990 T22: 0.6454 REMARK 3 T33: 0.5305 T12: 0.1510 REMARK 3 T13: -0.0604 T23: -0.0953 REMARK 3 L TENSOR REMARK 3 L11: 2.5788 L22: 4.2802 REMARK 3 L33: 3.0937 L12: 0.4855 REMARK 3 L13: -0.0089 L23: -0.1655 REMARK 3 S TENSOR REMARK 3 S11: 0.2074 S12: 0.5047 S13: -0.5049 REMARK 3 S21: -0.4002 S22: -0.1587 S23: -0.2285 REMARK 3 S31: 0.9455 S32: 0.4290 S33: -0.0219 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4742 34.5617 -22.3840 REMARK 3 T TENSOR REMARK 3 T11: 0.5914 T22: 0.6968 REMARK 3 T33: 0.3707 T12: 0.0051 REMARK 3 T13: -0.0357 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 2.0924 L22: 5.7283 REMARK 3 L33: 1.9601 L12: -1.8558 REMARK 3 L13: 0.6251 L23: -0.3584 REMARK 3 S TENSOR REMARK 3 S11: 0.3002 S12: 0.6752 S13: -0.1626 REMARK 3 S21: -0.2032 S22: -0.3659 S23: 0.0783 REMARK 3 S31: 0.3858 S32: 0.3759 S33: 0.0960 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 13NN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1001409217. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17089 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 37.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.70 REMARK 200 R MERGE (I) : 0.17600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 20.90 REMARK 200 R MERGE FOR SHELL (I) : 2.13800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: DIMPLE REMARK 200 STARTING MODEL: 7CJM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM MALEATE PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.11333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.55667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.55667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 89.11333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 GLY A -35 REMARK 465 SER A -34 REMARK 465 SER A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 SER A -26 REMARK 465 SER A -25 REMARK 465 GLY A -24 REMARK 465 LEU A -23 REMARK 465 VAL A -22 REMARK 465 PRO A -21 REMARK 465 ARG A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 MET A -16 REMARK 465 ALA A -15 REMARK 465 SER A -14 REMARK 465 MET A -13 REMARK 465 THR A -12 REMARK 465 GLY A -11 REMARK 465 GLY A -10 REMARK 465 GLN A -9 REMARK 465 GLN A -8 REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 ARG A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 SER A -2 REMARK 465 LEU A -1 REMARK 465 ARG A 0 REMARK 465 GLU A 1 REMARK 465 LYS A 315 REMARK 465 HIS A 316 REMARK 465 VAL A 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 65 O W1P A 402 1.30 REMARK 500 O HOH A 535 O HOH A 538 1.99 REMARK 500 O HOH A 506 O HOH A 533 2.11 REMARK 500 NH2 ARG A 65 C2 W1P A 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET A 208 C6 W1P A 403 4555 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 59 99.02 -62.70 REMARK 500 ASN A 267 -168.67 -126.03 REMARK 500 LYS A 279 -126.33 -115.53 REMARK 500 ASN A 308 -44.81 -142.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 189 SG REMARK 620 2 CYS A 192 SG 108.6 REMARK 620 3 CYS A 224 SG 112.2 103.7 REMARK 620 4 CYS A 226 SG 117.4 109.0 105.0 REMARK 620 N 1 2 3 DBREF 13NN A -2 317 UNP P0DTD1 R1AB_SARS2 1561 1880 SEQADV 13NN MET A -36 UNP P0DTD1 INITIATING METHIONINE SEQADV 13NN GLY A -35 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN SER A -34 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN SER A -33 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN HIS A -32 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN HIS A -31 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN HIS A -30 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN HIS A -29 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN HIS A -28 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN HIS A -27 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN SER A -26 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN SER A -25 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN GLY A -24 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN LEU A -23 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN VAL A -22 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN PRO A -21 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN ARG A -20 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN GLY A -19 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN SER A -18 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN HIS A -17 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN MET A -16 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN ALA A -15 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN SER A -14 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN MET A -13 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN THR A -12 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN GLY A -11 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN GLY A -10 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN GLN A -9 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN GLN A -8 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN MET A -7 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN GLY A -6 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN ARG A -5 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN GLY A -4 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN SER A -3 UNP P0DTD1 EXPRESSION TAG SEQADV 13NN SER A 111 UNP P0DTD1 CYS 1674 ENGINEERED MUTATION SEQADV 13NN HIS A 316 UNP P0DTD1 PRO 1879 CONFLICT SEQRES 1 A 354 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 354 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 354 GLY GLN GLN MET GLY ARG GLY SER SER LEU ARG GLU VAL SEQRES 4 A 354 ARG THR ILE LYS VAL PHE THR THR VAL ASP ASN ILE ASN SEQRES 5 A 354 LEU HIS THR GLN VAL VAL ASP MET SER MET THR TYR GLY SEQRES 6 A 354 GLN GLN PHE GLY PRO THR TYR LEU ASP GLY ALA ASP VAL SEQRES 7 A 354 THR LYS ILE LYS PRO HIS ASN SER HIS GLU GLY LYS THR SEQRES 8 A 354 PHE TYR VAL LEU PRO ASN ASP ASP THR LEU ARG VAL GLU SEQRES 9 A 354 ALA PHE GLU TYR TYR HIS THR THR ASP PRO SER PHE LEU SEQRES 10 A 354 GLY ARG TYR MET SER ALA LEU ASN HIS THR LYS LYS TRP SEQRES 11 A 354 LYS TYR PRO GLN VAL ASN GLY LEU THR SER ILE LYS TRP SEQRES 12 A 354 ALA ASP ASN ASN SER TYR LEU ALA THR ALA LEU LEU THR SEQRES 13 A 354 LEU GLN GLN ILE GLU LEU LYS PHE ASN PRO PRO ALA LEU SEQRES 14 A 354 GLN ASP ALA TYR TYR ARG ALA ARG ALA GLY GLU ALA ALA SEQRES 15 A 354 ASN PHE CYS ALA LEU ILE LEU ALA TYR CYS ASN LYS THR SEQRES 16 A 354 VAL GLY GLU LEU GLY ASP VAL ARG GLU THR MET SER TYR SEQRES 17 A 354 LEU PHE GLN HIS ALA ASN LEU ASP SER CYS LYS ARG VAL SEQRES 18 A 354 LEU ASN VAL VAL CYS LYS THR CYS GLY GLN GLN GLN THR SEQRES 19 A 354 THR LEU LYS GLY VAL GLU ALA VAL MET TYR MET GLY THR SEQRES 20 A 354 LEU SER TYR GLU GLN PHE LYS LYS GLY VAL GLN ILE PRO SEQRES 21 A 354 CYS THR CYS GLY LYS GLN ALA THR LYS TYR LEU VAL GLN SEQRES 22 A 354 GLN GLU SER PRO PHE VAL MET MET SER ALA PRO PRO ALA SEQRES 23 A 354 GLN TYR GLU LEU LYS HIS GLY THR PHE THR CYS ALA SER SEQRES 24 A 354 GLU TYR THR GLY ASN TYR GLN CYS GLY HIS TYR LYS HIS SEQRES 25 A 354 ILE THR SER LYS GLU THR LEU TYR CYS ILE ASP GLY ALA SEQRES 26 A 354 LEU LEU THR LYS SER SER GLU TYR LYS GLY PRO ILE THR SEQRES 27 A 354 ASP VAL PHE TYR LYS GLU ASN SER TYR THR THR THR ILE SEQRES 28 A 354 LYS HIS VAL HET ZN A 401 1 HET W1P A 402 13 HET W1P A 403 13 HETNAM ZN ZINC ION HETNAM W1P 5-METHYL-2-PHENYL-2,4-DIHYDRO-3H-PYRAZOL-3-ONE FORMUL 2 ZN ZN 2+ FORMUL 3 W1P 2(C10 H10 N2 O) FORMUL 5 HOH *38(H2 O) HELIX 1 AA1 THR A 26 GLY A 32 1 7 HELIX 2 AA2 HIS A 47 GLU A 51 5 5 HELIX 3 AA3 ASP A 61 HIS A 73 1 13 HELIX 4 AA4 SER A 78 LYS A 91 1 14 HELIX 5 AA5 ASN A 110 GLN A 121 1 12 HELIX 6 AA6 PRO A 129 GLY A 142 1 14 HELIX 7 AA7 ALA A 144 CYS A 155 1 12 HELIX 8 AA8 ASP A 164 HIS A 175 1 12 HELIX 9 AA9 VAL A 202 ALA A 204 5 3 HELIX 10 AB1 SER A 212 GLY A 219 1 8 SHEET 1 AA1 5 HIS A 17 ASP A 22 0 SHEET 2 AA1 5 THR A 4 THR A 10 -1 N VAL A 7 O GLN A 19 SHEET 3 AA1 5 THR A 54 VAL A 57 1 O PHE A 55 N PHE A 8 SHEET 4 AA1 5 THR A 34 LEU A 36 -1 N TYR A 35 O TYR A 56 SHEET 5 AA1 5 ALA A 39 ASP A 40 -1 O ALA A 39 N LEU A 36 SHEET 1 AA2 2 GLN A 97 VAL A 98 0 SHEET 2 AA2 2 LEU A 101 THR A 102 -1 O LEU A 101 N VAL A 98 SHEET 1 AA3 4 GLY A 193 LYS A 200 0 SHEET 2 AA3 4 LYS A 182 CYS A 189 -1 N ARG A 183 O LEU A 199 SHEET 3 AA3 4 GLN A 229 GLU A 238 -1 O GLN A 236 N VAL A 184 SHEET 4 AA3 4 VAL A 220 PRO A 223 -1 N VAL A 220 O LYS A 232 SHEET 1 AA4 4 GLY A 193 LYS A 200 0 SHEET 2 AA4 4 LYS A 182 CYS A 189 -1 N ARG A 183 O LEU A 199 SHEET 3 AA4 4 GLN A 229 GLU A 238 -1 O GLN A 236 N VAL A 184 SHEET 4 AA4 4 TYR A 310 THR A 311 -1 O TYR A 310 N GLN A 237 SHEET 1 AA5 7 MET A 206 MET A 208 0 SHEET 2 AA5 7 PHE A 241 LEU A 253 1 O SER A 245 N TYR A 207 SHEET 3 AA5 7 TYR A 296 LYS A 306 -1 O VAL A 303 N MET A 244 SHEET 4 AA5 7 CYS A 260 GLY A 266 -1 N SER A 262 O ASP A 302 SHEET 5 AA5 7 GLY A 271 SER A 278 -1 O ILE A 276 N ALA A 261 SHEET 6 AA5 7 LEU A 282 ASP A 286 -1 O ILE A 285 N HIS A 275 SHEET 7 AA5 7 LEU A 289 SER A 293 -1 O THR A 291 N CYS A 284 LINK SG CYS A 189 ZN ZN A 401 1555 1555 2.35 LINK SG CYS A 192 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 224 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 226 ZN ZN A 401 1555 1555 2.34 CRYST1 82.840 82.840 133.670 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012071 0.006969 0.000000 0.00000 SCALE2 0.000000 0.013939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007481 0.00000 CONECT 1516 2497 CONECT 1538 2497 CONECT 1785 2497 CONECT 1798 2497 CONECT 2497 1516 1538 1785 1798 CONECT 2498 2499 2505 2509 CONECT 2499 2498 2500 2510 CONECT 2500 2499 2501 CONECT 2501 2500 2502 CONECT 2502 2501 2503 CONECT 2503 2502 2510 CONECT 2504 2505 CONECT 2505 2498 2504 2506 CONECT 2506 2505 2507 CONECT 2507 2506 2508 2509 CONECT 2508 2507 CONECT 2509 2498 2507 CONECT 2510 2499 2503 CONECT 2511 2512 2518 2522 CONECT 2512 2511 2513 2523 CONECT 2513 2512 2514 CONECT 2514 2513 2515 CONECT 2515 2514 2516 CONECT 2516 2515 2523 CONECT 2517 2518 CONECT 2518 2511 2517 2519 CONECT 2519 2518 2520 CONECT 2520 2519 2521 2522 CONECT 2521 2520 CONECT 2522 2511 2520 CONECT 2523 2512 2516 MASTER 374 0 3 10 22 0 0 6 2548 1 31 28 END