HEADER HYDROLASE 17-SEP-25 13OZ TITLE PANDDA ANALYSIS GROUP DEPOSITION -- CRYSTAL STRUCTURE OF PLPRO-C111S TITLE 2 IN COMPLEX WITH FR12541 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAPAIN-LIKE PROTEASE NSP3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 3,NSP3,PL2-PRO,PAPAIN-LIKE COMPND 5 PROTEINASE,PL-PRO; COMPND 6 EC: 3.4.19.12,3.4.22.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PLPRO, SARS-COV-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,L.HUANG,Q.XU,Z.ZHU,M.LI,H.ZHOU,T.HAN,S.ZHENG,Q.WANG,F.YU REVDAT 1 18-FEB-26 13OZ 0 JRNL AUTH W.W.WANG,L.Q.HUANG,Q.XU,Z.M.ZHU,M.LI,H.ZHOU,T.L.HAN, JRNL AUTH 2 S.H.ZHENG,J.LI,Q.S.WANG,F.YU JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING DISCOVERS NOVEL JRNL TITL 2 MICROMOLAR ACTIVE INHIBITORS AND DRUGGABLE HOTSPOTS OF JRNL TITL 3 SARS-COV-2 PL PRO. JRNL REF INT.J.BIOL.MACROMOL. V. 347 50689 2026 JRNL REFN ISSN 0141-8130 JRNL PMID 41638277 JRNL DOI 10.1016/J.IJBIOMAC.2026.150689 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4700 - 4.7200 1.00 2907 141 0.1599 0.1746 REMARK 3 2 4.7200 - 3.7500 1.00 2811 118 0.1487 0.1691 REMARK 3 3 3.7400 - 3.2700 1.00 2740 147 0.1911 0.2602 REMARK 3 4 3.2700 - 2.9700 1.00 2722 135 0.2404 0.3108 REMARK 3 5 2.9700 - 2.7600 1.00 2718 146 0.2642 0.3368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.371 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.792 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2557 REMARK 3 ANGLE : 0.637 3469 REMARK 3 CHIRALITY : 0.041 384 REMARK 3 PLANARITY : 0.005 440 REMARK 3 DIHEDRAL : 6.485 344 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6993 -37.4338 -4.4514 REMARK 3 T TENSOR REMARK 3 T11: 0.6775 T22: 0.5355 REMARK 3 T33: 0.5756 T12: 0.0310 REMARK 3 T13: -0.1398 T23: 0.0487 REMARK 3 L TENSOR REMARK 3 L11: 2.6569 L22: 4.4616 REMARK 3 L33: 3.2301 L12: 0.9851 REMARK 3 L13: 0.2285 L23: 0.5711 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: -0.5343 S13: -0.4534 REMARK 3 S21: 0.6429 S22: 0.0719 S23: -0.7462 REMARK 3 S31: 0.5156 S32: 0.3776 S33: -0.0801 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2785 -31.1689 -23.6868 REMARK 3 T TENSOR REMARK 3 T11: 0.3519 T22: 0.3935 REMARK 3 T33: 0.4257 T12: -0.0359 REMARK 3 T13: 0.0056 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 1.8089 L22: 1.4767 REMARK 3 L33: 3.4520 L12: 0.0672 REMARK 3 L13: -0.1943 L23: -0.9150 REMARK 3 S TENSOR REMARK 3 S11: 0.1475 S12: 0.1297 S13: -0.0710 REMARK 3 S21: 0.0322 S22: -0.1265 S23: -0.1709 REMARK 3 S31: 0.1471 S32: 0.2662 S33: -0.0210 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4394 -20.2031 -23.2619 REMARK 3 T TENSOR REMARK 3 T11: 0.5683 T22: 0.3951 REMARK 3 T33: 0.4862 T12: 0.0330 REMARK 3 T13: 0.0186 T23: -0.0644 REMARK 3 L TENSOR REMARK 3 L11: 1.2455 L22: 1.1011 REMARK 3 L33: 4.7125 L12: 0.4030 REMARK 3 L13: -0.7189 L23: -0.8571 REMARK 3 S TENSOR REMARK 3 S11: 0.3275 S12: 0.0097 S13: 0.5199 REMARK 3 S21: 0.4066 S22: 0.0398 S23: -0.4179 REMARK 3 S31: -1.0318 S32: -0.0439 S33: -0.0857 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5254 -26.5434 -30.3034 REMARK 3 T TENSOR REMARK 3 T11: 0.4579 T22: 0.5385 REMARK 3 T33: 0.5031 T12: -0.0137 REMARK 3 T13: 0.0108 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 3.8782 L22: 3.3381 REMARK 3 L33: 2.8094 L12: -1.8475 REMARK 3 L13: 0.7578 L23: -0.6400 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: 0.0936 S13: -0.1735 REMARK 3 S21: -0.1589 S22: 0.2603 S23: 0.5569 REMARK 3 S31: -0.0404 S32: -0.4928 S33: -0.1034 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7664 -23.0319 -43.1472 REMARK 3 T TENSOR REMARK 3 T11: 0.4964 T22: 0.9095 REMARK 3 T33: 0.6441 T12: 0.0462 REMARK 3 T13: -0.0168 T23: 0.0474 REMARK 3 L TENSOR REMARK 3 L11: 3.8533 L22: 3.7417 REMARK 3 L33: 3.4189 L12: -1.9964 REMARK 3 L13: 0.1068 L23: 0.8518 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: 0.8939 S13: -0.2909 REMARK 3 S21: -0.2547 S22: -0.0945 S23: 0.8900 REMARK 3 S31: -0.0554 S32: -1.0487 S33: 0.0413 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0578 -24.3514 -44.6656 REMARK 3 T TENSOR REMARK 3 T11: 0.4885 T22: 0.6306 REMARK 3 T33: 0.4010 T12: 0.0550 REMARK 3 T13: 0.0041 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 4.5395 L22: 2.4294 REMARK 3 L33: 2.5928 L12: -1.0284 REMARK 3 L13: -0.9407 L23: -0.1783 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: 0.6867 S13: 0.2062 REMARK 3 S21: -0.2731 S22: 0.1292 S23: 0.1709 REMARK 3 S31: -0.1573 S32: -0.4258 S33: -0.0465 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 13OZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1001409255. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14620 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.760 REMARK 200 RESOLUTION RANGE LOW (A) : 36.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.50 REMARK 200 R MERGE (I) : 0.17800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.50 REMARK 200 R MERGE FOR SHELL (I) : 1.59200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: DIMPLE REMARK 200 STARTING MODEL: 7CJM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM MALEATE PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.93333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.46667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.46667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.93333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 GLY A -35 REMARK 465 SER A -34 REMARK 465 SER A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 SER A -26 REMARK 465 SER A -25 REMARK 465 GLY A -24 REMARK 465 LEU A -23 REMARK 465 VAL A -22 REMARK 465 PRO A -21 REMARK 465 ARG A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 MET A -16 REMARK 465 ALA A -15 REMARK 465 SER A -14 REMARK 465 MET A -13 REMARK 465 THR A -12 REMARK 465 GLY A -11 REMARK 465 GLY A -10 REMARK 465 GLN A -9 REMARK 465 GLN A -8 REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 ARG A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 SER A -2 REMARK 465 LEU A -1 REMARK 465 ARG A 0 REMARK 465 GLU A 1 REMARK 465 LYS A 315 REMARK 465 HIS A 316 REMARK 465 VAL A 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 296 O HOH A 501 1.97 REMARK 500 O ILE A 123 O HOH A 502 1.99 REMARK 500 O HOH A 502 O HOH A 511 2.08 REMARK 500 O HOH A 514 O HOH A 528 2.17 REMARK 500 O HOH A 515 O HOH A 521 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 59 94.65 -64.13 REMARK 500 THR A 191 -97.08 -91.97 REMARK 500 CYS A 192 15.57 -67.05 REMARK 500 THR A 225 20.83 -74.99 REMARK 500 CYS A 270 46.82 -162.37 REMARK 500 LYS A 279 -129.17 -113.79 REMARK 500 ASN A 308 -58.01 -139.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 191 OG1 REMARK 620 2 CYS A 224 SG 119.4 REMARK 620 N 1 DBREF 13OZ A -2 317 UNP P0DTD1 R1AB_SARS2 1561 1880 SEQADV 13OZ MET A -36 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ GLY A -35 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ SER A -34 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ SER A -33 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ HIS A -32 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ HIS A -31 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ HIS A -30 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ HIS A -29 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ HIS A -28 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ HIS A -27 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ SER A -26 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ SER A -25 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ GLY A -24 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ LEU A -23 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ VAL A -22 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ PRO A -21 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ ARG A -20 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ GLY A -19 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ SER A -18 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ HIS A -17 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ MET A -16 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ ALA A -15 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ SER A -14 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ MET A -13 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ THR A -12 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ GLY A -11 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ GLY A -10 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ GLN A -9 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ GLN A -8 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ MET A -7 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ GLY A -6 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ ARG A -5 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ GLY A -4 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ SER A -3 UNP P0DTD1 EXPRESSION TAG SEQADV 13OZ SER A 111 UNP P0DTD1 CYS 1674 ENGINEERED MUTATION SEQADV 13OZ HIS A 316 UNP P0DTD1 PRO 1879 CONFLICT SEQRES 1 A 354 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 354 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 354 GLY GLN GLN MET GLY ARG GLY SER SER LEU ARG GLU VAL SEQRES 4 A 354 ARG THR ILE LYS VAL PHE THR THR VAL ASP ASN ILE ASN SEQRES 5 A 354 LEU HIS THR GLN VAL VAL ASP MET SER MET THR TYR GLY SEQRES 6 A 354 GLN GLN PHE GLY PRO THR TYR LEU ASP GLY ALA ASP VAL SEQRES 7 A 354 THR LYS ILE LYS PRO HIS ASN SER HIS GLU GLY LYS THR SEQRES 8 A 354 PHE TYR VAL LEU PRO ASN ASP ASP THR LEU ARG VAL GLU SEQRES 9 A 354 ALA PHE GLU TYR TYR HIS THR THR ASP PRO SER PHE LEU SEQRES 10 A 354 GLY ARG TYR MET SER ALA LEU ASN HIS THR LYS LYS TRP SEQRES 11 A 354 LYS TYR PRO GLN VAL ASN GLY LEU THR SER ILE LYS TRP SEQRES 12 A 354 ALA ASP ASN ASN SER TYR LEU ALA THR ALA LEU LEU THR SEQRES 13 A 354 LEU GLN GLN ILE GLU LEU LYS PHE ASN PRO PRO ALA LEU SEQRES 14 A 354 GLN ASP ALA TYR TYR ARG ALA ARG ALA GLY GLU ALA ALA SEQRES 15 A 354 ASN PHE CYS ALA LEU ILE LEU ALA TYR CYS ASN LYS THR SEQRES 16 A 354 VAL GLY GLU LEU GLY ASP VAL ARG GLU THR MET SER TYR SEQRES 17 A 354 LEU PHE GLN HIS ALA ASN LEU ASP SER CYS LYS ARG VAL SEQRES 18 A 354 LEU ASN VAL VAL CYS LYS THR CYS GLY GLN GLN GLN THR SEQRES 19 A 354 THR LEU LYS GLY VAL GLU ALA VAL MET TYR MET GLY THR SEQRES 20 A 354 LEU SER TYR GLU GLN PHE LYS LYS GLY VAL GLN ILE PRO SEQRES 21 A 354 CYS THR CYS GLY LYS GLN ALA THR LYS TYR LEU VAL GLN SEQRES 22 A 354 GLN GLU SER PRO PHE VAL MET MET SER ALA PRO PRO ALA SEQRES 23 A 354 GLN TYR GLU LEU LYS HIS GLY THR PHE THR CYS ALA SER SEQRES 24 A 354 GLU TYR THR GLY ASN TYR GLN CYS GLY HIS TYR LYS HIS SEQRES 25 A 354 ILE THR SER LYS GLU THR LEU TYR CYS ILE ASP GLY ALA SEQRES 26 A 354 LEU LEU THR LYS SER SER GLU TYR LYS GLY PRO ILE THR SEQRES 27 A 354 ASP VAL PHE TYR LYS GLU ASN SER TYR THR THR THR ILE SEQRES 28 A 354 LYS HIS VAL HET ZN A 401 1 HET HX8 A 402 14 HETNAM ZN ZINC ION HETNAM HX8 4-PHENOXYPHENOL FORMUL 2 ZN ZN 2+ FORMUL 3 HX8 C12 H10 O2 FORMUL 4 HOH *30(H2 O) HELIX 1 AA1 THR A 26 GLY A 32 1 7 HELIX 2 AA2 HIS A 47 GLU A 51 5 5 HELIX 3 AA3 ASP A 61 HIS A 73 1 13 HELIX 4 AA4 PRO A 77 LYS A 91 1 15 HELIX 5 AA5 ASN A 110 GLN A 121 1 12 HELIX 6 AA6 PRO A 129 GLY A 142 1 14 HELIX 7 AA7 ALA A 144 CYS A 155 1 12 HELIX 8 AA8 ASP A 164 HIS A 175 1 12 HELIX 9 AA9 GLY A 201 VAL A 205 1 5 HELIX 10 AB1 SER A 212 GLY A 219 1 8 SHEET 1 AA1 5 HIS A 17 ASP A 22 0 SHEET 2 AA1 5 THR A 4 THR A 10 -1 N VAL A 7 O GLN A 19 SHEET 3 AA1 5 THR A 54 VAL A 57 1 O PHE A 55 N PHE A 8 SHEET 4 AA1 5 THR A 34 LEU A 36 -1 N TYR A 35 O TYR A 56 SHEET 5 AA1 5 ALA A 39 ASP A 40 -1 O ALA A 39 N LEU A 36 SHEET 1 AA2 2 GLN A 97 VAL A 98 0 SHEET 2 AA2 2 LEU A 101 THR A 102 -1 O LEU A 101 N VAL A 98 SHEET 1 AA3 4 GLY A 193 LYS A 200 0 SHEET 2 AA3 4 LYS A 182 CYS A 189 -1 N ARG A 183 O LEU A 199 SHEET 3 AA3 4 GLN A 229 GLU A 238 -1 O GLN A 236 N VAL A 184 SHEET 4 AA3 4 VAL A 220 PRO A 223 -1 N ILE A 222 O ALA A 230 SHEET 1 AA4 4 GLY A 193 LYS A 200 0 SHEET 2 AA4 4 LYS A 182 CYS A 189 -1 N ARG A 183 O LEU A 199 SHEET 3 AA4 4 GLN A 229 GLU A 238 -1 O GLN A 236 N VAL A 184 SHEET 4 AA4 4 SER A 309 THR A 311 -1 O TYR A 310 N GLN A 237 SHEET 1 AA5 7 MET A 206 MET A 208 0 SHEET 2 AA5 7 PHE A 241 LEU A 253 1 O SER A 245 N TYR A 207 SHEET 3 AA5 7 TYR A 296 LYS A 306 -1 O VAL A 303 N MET A 244 SHEET 4 AA5 7 CYS A 260 THR A 265 -1 N SER A 262 O ASP A 302 SHEET 5 AA5 7 HIS A 272 SER A 278 -1 O ILE A 276 N ALA A 261 SHEET 6 AA5 7 LEU A 282 ASP A 286 -1 O TYR A 283 N THR A 277 SHEET 7 AA5 7 LEU A 289 SER A 293 -1 O THR A 291 N CYS A 284 LINK OG1 THR A 191 ZN ZN A 401 1555 1555 2.61 LINK SG CYS A 224 ZN ZN A 401 1555 1555 2.30 CRYST1 84.230 84.230 133.400 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011872 0.006854 0.000000 0.00000 SCALE2 0.000000 0.013709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007496 0.00000 CONECT 1519 2485 CONECT 1773 2485 CONECT 2485 1519 1773 CONECT 2486 2487 2491 CONECT 2487 2486 2488 CONECT 2488 2487 2489 CONECT 2489 2488 2490 CONECT 2490 2489 2491 2492 CONECT 2491 2486 2490 CONECT 2492 2490 2493 CONECT 2493 2492 2494 2498 CONECT 2494 2493 2495 CONECT 2495 2494 2496 CONECT 2496 2495 2497 2499 CONECT 2497 2496 2498 CONECT 2498 2493 2497 CONECT 2499 2496 MASTER 386 0 2 10 22 0 0 6 2528 1 17 28 END