HEADER HYDROLASE 17-SEP-25 13PV TITLE PANDDA ANALYSIS GROUP DEPOSITION -- CRYSTAL STRUCTURE OF PLPRO-C111S TITLE 2 IN COMPLEX WITH FR14220 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAPAIN-LIKE PROTEASE NSP3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 3,NSP3,PL2-PRO,PAPAIN-LIKE COMPND 5 PROTEINASE,PL-PRO; COMPND 6 EC: 3.4.19.12,3.4.22.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PLPRO, SARS-COV-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,L.HUANG,Q.XU,Z.ZHU,M.LI,H.ZHOU,T.HAN,S.ZHENG,Q.WANG,F.YU REVDAT 1 18-FEB-26 13PV 0 JRNL AUTH W.W.WANG,L.Q.HUANG,Q.XU,Z.M.ZHU,M.LI,H.ZHOU,T.L.HAN, JRNL AUTH 2 S.H.ZHENG,J.LI,Q.S.WANG,F.YU JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING DISCOVERS NOVEL JRNL TITL 2 MICROMOLAR ACTIVE INHIBITORS AND DRUGGABLE HOTSPOTS OF JRNL TITL 3 SARS-COV-2 PL PRO. JRNL REF INT.J.BIOL.MACROMOL. V. 347 50689 2026 JRNL REFN ISSN 0141-8130 JRNL PMID 41638277 JRNL DOI 10.1016/J.IJBIOMAC.2026.150689 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7800 - 4.6700 1.00 2926 141 0.1642 0.1645 REMARK 3 2 4.6700 - 3.7100 1.00 2820 120 0.1431 0.1494 REMARK 3 3 3.7100 - 3.2400 1.00 2756 145 0.1644 0.2075 REMARK 3 4 3.2400 - 2.9500 1.00 2759 139 0.2233 0.2113 REMARK 3 5 2.9400 - 2.7300 1.00 2725 143 0.2108 0.2703 REMARK 3 6 2.7300 - 2.5700 1.00 2713 155 0.2279 0.2675 REMARK 3 7 2.5700 - 2.4400 1.00 2753 118 0.2211 0.3029 REMARK 3 8 2.4400 - 2.3400 1.00 2703 137 0.2276 0.2556 REMARK 3 9 2.3400 - 2.2500 1.00 2654 191 0.2284 0.2807 REMARK 3 10 2.2500 - 2.1700 1.00 2742 131 0.2548 0.2821 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.221 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2578 REMARK 3 ANGLE : 0.492 3496 REMARK 3 CHIRALITY : 0.038 384 REMARK 3 PLANARITY : 0.003 444 REMARK 3 DIHEDRAL : 6.878 352 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.5320 -37.1609 -4.7723 REMARK 3 T TENSOR REMARK 3 T11: 0.5292 T22: 0.4455 REMARK 3 T33: 0.4725 T12: 0.0566 REMARK 3 T13: -0.0717 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.4128 L22: 3.9132 REMARK 3 L33: 3.2875 L12: 0.4791 REMARK 3 L13: -0.0150 L23: 0.0922 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: -0.2723 S13: -0.2767 REMARK 3 S21: 0.2357 S22: 0.0715 S23: -0.2672 REMARK 3 S31: 0.4691 S32: 0.4099 S33: -0.0777 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6364 -29.0552 -24.5805 REMARK 3 T TENSOR REMARK 3 T11: 0.3397 T22: 0.3443 REMARK 3 T33: 0.3594 T12: 0.0015 REMARK 3 T13: 0.0029 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.7847 L22: 1.1952 REMARK 3 L33: 4.3545 L12: -0.0253 REMARK 3 L13: -0.5074 L23: -0.5164 REMARK 3 S TENSOR REMARK 3 S11: 0.1102 S12: 0.0077 S13: 0.0370 REMARK 3 S21: -0.0017 S22: -0.0036 S23: -0.0306 REMARK 3 S31: -0.0653 S32: 0.0131 S33: -0.0932 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0758 -20.6532 -37.8502 REMARK 3 T TENSOR REMARK 3 T11: 0.4678 T22: 0.8352 REMARK 3 T33: 0.6955 T12: 0.0478 REMARK 3 T13: -0.0404 T23: 0.0774 REMARK 3 L TENSOR REMARK 3 L11: 3.3894 L22: 3.9959 REMARK 3 L33: 3.8985 L12: -1.9082 REMARK 3 L13: -0.2712 L23: -0.4766 REMARK 3 S TENSOR REMARK 3 S11: -0.0162 S12: 0.4019 S13: -0.1833 REMARK 3 S21: -0.2883 S22: -0.0184 S23: 1.2026 REMARK 3 S31: -0.0078 S32: -1.3819 S33: 0.0537 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7876 -24.4767 -45.2055 REMARK 3 T TENSOR REMARK 3 T11: 0.4049 T22: 0.4468 REMARK 3 T33: 0.2760 T12: 0.0149 REMARK 3 T13: 0.0262 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 5.1906 L22: 1.9409 REMARK 3 L33: 3.1163 L12: -0.9115 REMARK 3 L13: -0.2260 L23: 0.1558 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: 0.5957 S13: 0.0967 REMARK 3 S21: -0.2052 S22: 0.0991 S23: 0.0770 REMARK 3 S31: -0.0743 S32: -0.4048 S33: -0.1232 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 13PV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1001409276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29019 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 37.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.30 REMARK 200 R MERGE FOR SHELL (I) : 1.77500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: DIMPLE REMARK 200 STARTING MODEL: 7CJM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM MALEATE PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.65333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.32667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.32667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.65333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 GLY A -35 REMARK 465 SER A -34 REMARK 465 SER A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 SER A -26 REMARK 465 SER A -25 REMARK 465 GLY A -24 REMARK 465 LEU A -23 REMARK 465 VAL A -22 REMARK 465 PRO A -21 REMARK 465 ARG A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 MET A -16 REMARK 465 ALA A -15 REMARK 465 SER A -14 REMARK 465 MET A -13 REMARK 465 THR A -12 REMARK 465 GLY A -11 REMARK 465 GLY A -10 REMARK 465 GLN A -9 REMARK 465 GLN A -8 REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 ARG A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 SER A -2 REMARK 465 LEU A -1 REMARK 465 ARG A 0 REMARK 465 GLU A 1 REMARK 465 LYS A 315 REMARK 465 HIS A 316 REMARK 465 VAL A 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 504 O HOH A 534 2.00 REMARK 500 O HOH A 568 O HOH A 598 2.01 REMARK 500 O HOH A 518 O HOH A 617 2.12 REMARK 500 O HOH A 519 O HOH A 591 2.16 REMARK 500 O HOH A 572 O HOH A 578 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O TYR A 268 C2 UTG A 402 6554 1.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 107 146.09 -172.93 REMARK 500 LYS A 279 -129.75 -116.30 REMARK 500 ASN A 308 -54.61 -146.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 189 SG REMARK 620 2 CYS A 224 SG 136.4 REMARK 620 N 1 DBREF 13PV A -2 317 UNP P0DTD1 R1AB_SARS2 1561 1880 SEQADV 13PV MET A -36 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV GLY A -35 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV SER A -34 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV SER A -33 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV HIS A -32 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV HIS A -31 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV HIS A -30 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV HIS A -29 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV HIS A -28 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV HIS A -27 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV SER A -26 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV SER A -25 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV GLY A -24 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV LEU A -23 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV VAL A -22 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV PRO A -21 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV ARG A -20 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV GLY A -19 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV SER A -18 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV HIS A -17 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV MET A -16 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV ALA A -15 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV SER A -14 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV MET A -13 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV THR A -12 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV GLY A -11 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV GLY A -10 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV GLN A -9 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV GLN A -8 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV MET A -7 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV GLY A -6 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV ARG A -5 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV GLY A -4 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV SER A -3 UNP P0DTD1 EXPRESSION TAG SEQADV 13PV SER A 111 UNP P0DTD1 CYS 1674 ENGINEERED MUTATION SEQADV 13PV HIS A 316 UNP P0DTD1 PRO 1879 CONFLICT SEQRES 1 A 354 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 354 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 354 GLY GLN GLN MET GLY ARG GLY SER SER LEU ARG GLU VAL SEQRES 4 A 354 ARG THR ILE LYS VAL PHE THR THR VAL ASP ASN ILE ASN SEQRES 5 A 354 LEU HIS THR GLN VAL VAL ASP MET SER MET THR TYR GLY SEQRES 6 A 354 GLN GLN PHE GLY PRO THR TYR LEU ASP GLY ALA ASP VAL SEQRES 7 A 354 THR LYS ILE LYS PRO HIS ASN SER HIS GLU GLY LYS THR SEQRES 8 A 354 PHE TYR VAL LEU PRO ASN ASP ASP THR LEU ARG VAL GLU SEQRES 9 A 354 ALA PHE GLU TYR TYR HIS THR THR ASP PRO SER PHE LEU SEQRES 10 A 354 GLY ARG TYR MET SER ALA LEU ASN HIS THR LYS LYS TRP SEQRES 11 A 354 LYS TYR PRO GLN VAL ASN GLY LEU THR SER ILE LYS TRP SEQRES 12 A 354 ALA ASP ASN ASN SER TYR LEU ALA THR ALA LEU LEU THR SEQRES 13 A 354 LEU GLN GLN ILE GLU LEU LYS PHE ASN PRO PRO ALA LEU SEQRES 14 A 354 GLN ASP ALA TYR TYR ARG ALA ARG ALA GLY GLU ALA ALA SEQRES 15 A 354 ASN PHE CYS ALA LEU ILE LEU ALA TYR CYS ASN LYS THR SEQRES 16 A 354 VAL GLY GLU LEU GLY ASP VAL ARG GLU THR MET SER TYR SEQRES 17 A 354 LEU PHE GLN HIS ALA ASN LEU ASP SER CYS LYS ARG VAL SEQRES 18 A 354 LEU ASN VAL VAL CYS LYS THR CYS GLY GLN GLN GLN THR SEQRES 19 A 354 THR LEU LYS GLY VAL GLU ALA VAL MET TYR MET GLY THR SEQRES 20 A 354 LEU SER TYR GLU GLN PHE LYS LYS GLY VAL GLN ILE PRO SEQRES 21 A 354 CYS THR CYS GLY LYS GLN ALA THR LYS TYR LEU VAL GLN SEQRES 22 A 354 GLN GLU SER PRO PHE VAL MET MET SER ALA PRO PRO ALA SEQRES 23 A 354 GLN TYR GLU LEU LYS HIS GLY THR PHE THR CYS ALA SER SEQRES 24 A 354 GLU TYR THR GLY ASN TYR GLN CYS GLY HIS TYR LYS HIS SEQRES 25 A 354 ILE THR SER LYS GLU THR LEU TYR CYS ILE ASP GLY ALA SEQRES 26 A 354 LEU LEU THR LYS SER SER GLU TYR LYS GLY PRO ILE THR SEQRES 27 A 354 ASP VAL PHE TYR LYS GLU ASN SER TYR THR THR THR ILE SEQRES 28 A 354 LYS HIS VAL HET ZN A 401 1 HET UTG A 402 17 HET UTG A 403 17 HETNAM ZN ZINC ION HETNAM UTG N-(2-CHLOROPHENYL)-N'-[(FURAN-2-YL)METHYL]THIOUREA FORMUL 2 ZN ZN 2+ FORMUL 3 UTG 2(C12 H11 CL N2 O S) FORMUL 5 HOH *134(H2 O) HELIX 1 AA1 THR A 26 GLY A 32 1 7 HELIX 2 AA2 HIS A 47 GLU A 51 5 5 HELIX 3 AA3 ASP A 61 HIS A 73 1 13 HELIX 4 AA4 SER A 78 LYS A 91 1 14 HELIX 5 AA5 ASN A 110 GLN A 121 1 12 HELIX 6 AA6 PRO A 129 GLY A 142 1 14 HELIX 7 AA7 ALA A 144 CYS A 155 1 12 HELIX 8 AA8 ASP A 164 HIS A 175 1 12 HELIX 9 AA9 VAL A 202 ALA A 204 5 3 HELIX 10 AB1 SER A 212 GLY A 219 1 8 SHEET 1 AA1 5 HIS A 17 ASP A 22 0 SHEET 2 AA1 5 THR A 4 THR A 10 -1 N VAL A 7 O GLN A 19 SHEET 3 AA1 5 THR A 54 VAL A 57 1 O PHE A 55 N PHE A 8 SHEET 4 AA1 5 THR A 34 LEU A 36 -1 N TYR A 35 O TYR A 56 SHEET 5 AA1 5 ALA A 39 ASP A 40 -1 O ALA A 39 N LEU A 36 SHEET 1 AA2 2 GLN A 97 VAL A 98 0 SHEET 2 AA2 2 LEU A 101 THR A 102 -1 O LEU A 101 N VAL A 98 SHEET 1 AA3 4 GLY A 193 LYS A 200 0 SHEET 2 AA3 4 LYS A 182 CYS A 189 -1 N ARG A 183 O LEU A 199 SHEET 3 AA3 4 GLN A 229 GLU A 238 -1 O GLN A 236 N VAL A 184 SHEET 4 AA3 4 VAL A 220 PRO A 223 -1 N VAL A 220 O LYS A 232 SHEET 1 AA4 4 GLY A 193 LYS A 200 0 SHEET 2 AA4 4 LYS A 182 CYS A 189 -1 N ARG A 183 O LEU A 199 SHEET 3 AA4 4 GLN A 229 GLU A 238 -1 O GLN A 236 N VAL A 184 SHEET 4 AA4 4 TYR A 310 THR A 311 -1 O TYR A 310 N GLN A 237 SHEET 1 AA5 7 MET A 206 MET A 208 0 SHEET 2 AA5 7 PHE A 241 LEU A 253 1 O SER A 245 N TYR A 207 SHEET 3 AA5 7 TYR A 296 LYS A 306 -1 O VAL A 303 N MET A 244 SHEET 4 AA5 7 CYS A 260 GLY A 266 -1 N CYS A 260 O PHE A 304 SHEET 5 AA5 7 GLY A 271 SER A 278 -1 O LYS A 274 N GLU A 263 SHEET 6 AA5 7 LEU A 282 ASP A 286 -1 O ILE A 285 N HIS A 275 SHEET 7 AA5 7 LEU A 289 SER A 293 -1 O THR A 291 N CYS A 284 LINK SG CYS A 189 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 224 ZN ZN A 401 1555 1555 2.30 CRYST1 83.430 83.430 132.980 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011986 0.006920 0.000000 0.00000 SCALE2 0.000000 0.013840 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007520 0.00000 CONECT 1504 2485 CONECT 1773 2485 CONECT 2485 1504 1773 CONECT 2486 2487 2497 CONECT 2487 2486 2496 2500 CONECT 2488 2489 2495 2496 CONECT 2489 2488 2490 CONECT 2490 2489 2491 CONECT 2491 2490 2492 2502 CONECT 2492 2491 2493 CONECT 2493 2492 2494 CONECT 2494 2493 2502 CONECT 2495 2488 CONECT 2496 2487 2488 CONECT 2497 2486 2498 CONECT 2498 2497 2499 CONECT 2499 2498 2500 CONECT 2500 2487 2499 2501 CONECT 2501 2500 CONECT 2502 2491 2494 CONECT 2503 2504 2514 CONECT 2504 2503 2513 2517 CONECT 2505 2506 2512 2513 CONECT 2506 2505 2507 CONECT 2507 2506 2508 CONECT 2508 2507 2509 2519 CONECT 2509 2508 2510 CONECT 2510 2509 2511 CONECT 2511 2510 2519 CONECT 2512 2505 CONECT 2513 2504 2505 CONECT 2514 2503 2515 CONECT 2515 2514 2516 CONECT 2516 2515 2517 CONECT 2517 2504 2516 2518 CONECT 2518 2517 CONECT 2519 2508 2511 MASTER 376 0 3 10 22 0 0 6 2652 1 37 28 END