data_13RK # _entry.id 13RK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 13RK pdb_000013rk 10.2210/pdb13rk/pdb WWPDB D_1001409317 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-01-28 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.entry_id 13RK _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2025-10-09 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible N _pdbx_database_status.methods_development_category ? # _pdbx_contact_author.id 1 _pdbx_contact_author.name_last Fraser _pdbx_contact_author.name_first James _pdbx_contact_author.name_mi S. _pdbx_contact_author.email jaimefraser@gmail.com _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5080-2859 # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Correy, G.J.' 1 'Fraser, J.S.' 2 # _citation.id primary _citation.title 'Ligand screen against SARS-CoV-2 NSP3 macrodomain' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Correy, G.J.' ? 1 primary 'Fraser, J.S.' ? 2 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Non-structural protein 3' 18178.766 2 '3.4.19.121, 3.4.22.-' ? ? 'HIS6 purification tag and linker (MHHHHHHSSGVDLGTENLYFQ) cleaved with TEV protease' 2 non-polymer syn '(4M)-4-{4-[(2,2-dimethyl-5-oxopyrrolidin-1-yl)amino]-7H-pyrrolo[2,3-d]pyrimidin-6-yl}-1-methyl-1H-pyrazole-5-carbonitrile' 350.378 1 ? ? ? ? 3 water nat water 18.015 436 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'nsp3, PL2-PRO, Papain-like protease, Papain-like proteinase, PL-PRO' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNL YDKLVSSFL ; _entity_poly.pdbx_seq_one_letter_code_can ;SMVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNL YDKLVSSFL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4M)-4-{4-[(2,2-dimethyl-5-oxopyrrolidin-1-yl)amino]-7H-pyrrolo[2,3-d]pyrimidin-6-yl}-1-methyl-1H-pyrazole-5-carbonitrile' A1CXT 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 VAL n 1 4 ASN n 1 5 SER n 1 6 PHE n 1 7 SER n 1 8 GLY n 1 9 TYR n 1 10 LEU n 1 11 LYS n 1 12 LEU n 1 13 THR n 1 14 ASP n 1 15 ASN n 1 16 VAL n 1 17 TYR n 1 18 ILE n 1 19 LYS n 1 20 ASN n 1 21 ALA n 1 22 ASP n 1 23 ILE n 1 24 VAL n 1 25 GLU n 1 26 GLU n 1 27 ALA n 1 28 LYS n 1 29 LYS n 1 30 VAL n 1 31 LYS n 1 32 PRO n 1 33 THR n 1 34 VAL n 1 35 VAL n 1 36 VAL n 1 37 ASN n 1 38 ALA n 1 39 ALA n 1 40 ASN n 1 41 VAL n 1 42 TYR n 1 43 LEU n 1 44 LYS n 1 45 HIS n 1 46 GLY n 1 47 GLY n 1 48 GLY n 1 49 VAL n 1 50 ALA n 1 51 GLY n 1 52 ALA n 1 53 LEU n 1 54 ASN n 1 55 LYS n 1 56 ALA n 1 57 THR n 1 58 ASN n 1 59 ASN n 1 60 ALA n 1 61 MET n 1 62 GLN n 1 63 VAL n 1 64 GLU n 1 65 SER n 1 66 ASP n 1 67 ASP n 1 68 TYR n 1 69 ILE n 1 70 ALA n 1 71 THR n 1 72 ASN n 1 73 GLY n 1 74 PRO n 1 75 LEU n 1 76 LYS n 1 77 VAL n 1 78 GLY n 1 79 GLY n 1 80 SER n 1 81 CYS n 1 82 VAL n 1 83 LEU n 1 84 SER n 1 85 GLY n 1 86 HIS n 1 87 ASN n 1 88 LEU n 1 89 ALA n 1 90 LYS n 1 91 HIS n 1 92 CYS n 1 93 LEU n 1 94 HIS n 1 95 VAL n 1 96 VAL n 1 97 GLY n 1 98 PRO n 1 99 ASN n 1 100 VAL n 1 101 ASN n 1 102 LYS n 1 103 GLY n 1 104 GLU n 1 105 ASP n 1 106 ILE n 1 107 GLN n 1 108 LEU n 1 109 LEU n 1 110 LYS n 1 111 SER n 1 112 ALA n 1 113 TYR n 1 114 GLU n 1 115 ASN n 1 116 PHE n 1 117 ASN n 1 118 GLN n 1 119 HIS n 1 120 GLU n 1 121 VAL n 1 122 LEU n 1 123 LEU n 1 124 ALA n 1 125 PRO n 1 126 LEU n 1 127 LEU n 1 128 SER n 1 129 ALA n 1 130 GLY n 1 131 ILE n 1 132 PHE n 1 133 GLY n 1 134 ALA n 1 135 ASP n 1 136 PRO n 1 137 ILE n 1 138 HIS n 1 139 SER n 1 140 LEU n 1 141 ARG n 1 142 VAL n 1 143 CYS n 1 144 VAL n 1 145 ASP n 1 146 THR n 1 147 VAL n 1 148 ARG n 1 149 THR n 1 150 ASN n 1 151 VAL n 1 152 TYR n 1 153 LEU n 1 154 ALA n 1 155 VAL n 1 156 PHE n 1 157 ASP n 1 158 LYS n 1 159 ASN n 1 160 LEU n 1 161 TYR n 1 162 ASP n 1 163 LYS n 1 164 LEU n 1 165 VAL n 1 166 SER n 1 167 SER n 1 168 PHE n 1 169 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 169 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rep, 1a-1b' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET22b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1CXT non-polymer . '(4M)-4-{4-[(2,2-dimethyl-5-oxopyrrolidin-1-yl)amino]-7H-pyrrolo[2,3-d]pyrimidin-6-yl}-1-methyl-1H-pyrazole-5-carbonitrile' ? 'C17 H18 N8 O' 350.378 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 ? ? ? A . n A 1 2 MET 2 2 ? ? ? A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 MET 61 61 61 MET MET A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 CYS 81 81 81 CYS CYS A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 HIS 91 91 91 HIS HIS A . n A 1 92 CYS 92 92 92 CYS CYS A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 PHE 116 116 116 PHE PHE A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 PRO 136 136 136 PRO PRO A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 HIS 138 138 138 HIS HIS A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 CYS 143 143 143 CYS CYS A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 THR 149 149 149 THR THR A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 TYR 152 152 152 TYR TYR A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 PHE 168 168 168 PHE PHE A . n A 1 169 LEU 169 169 169 LEU LEU A . n B 1 1 SER 1 1 1 SER SER B . n B 1 2 MET 2 2 2 MET MET B . n B 1 3 VAL 3 3 3 VAL VAL B . n B 1 4 ASN 4 4 4 ASN ASN B . n B 1 5 SER 5 5 5 SER SER B . n B 1 6 PHE 6 6 6 PHE PHE B . n B 1 7 SER 7 7 7 SER SER B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 TYR 9 9 9 TYR TYR B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 LYS 11 11 11 LYS LYS B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 THR 13 13 13 THR THR B . n B 1 14 ASP 14 14 14 ASP ASP B . n B 1 15 ASN 15 15 15 ASN ASN B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 TYR 17 17 17 TYR TYR B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 LYS 19 19 19 LYS LYS B . n B 1 20 ASN 20 20 20 ASN ASN B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 ASP 22 22 22 ASP ASP B . n B 1 23 ILE 23 23 23 ILE ILE B . n B 1 24 VAL 24 24 24 VAL VAL B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 LYS 28 28 28 LYS LYS B . n B 1 29 LYS 29 29 29 LYS LYS B . n B 1 30 VAL 30 30 30 VAL VAL B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 PRO 32 32 32 PRO PRO B . n B 1 33 THR 33 33 33 THR THR B . n B 1 34 VAL 34 34 34 VAL VAL B . n B 1 35 VAL 35 35 35 VAL VAL B . n B 1 36 VAL 36 36 36 VAL VAL B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 ALA 38 38 38 ALA ALA B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 ASN 40 40 40 ASN ASN B . n B 1 41 VAL 41 41 41 VAL VAL B . n B 1 42 TYR 42 42 42 TYR TYR B . n B 1 43 LEU 43 43 43 LEU LEU B . n B 1 44 LYS 44 44 44 LYS LYS B . n B 1 45 HIS 45 45 45 HIS HIS B . n B 1 46 GLY 46 46 46 GLY GLY B . n B 1 47 GLY 47 47 47 GLY GLY B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 VAL 49 49 49 VAL VAL B . n B 1 50 ALA 50 50 50 ALA ALA B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 ALA 52 52 52 ALA ALA B . n B 1 53 LEU 53 53 53 LEU LEU B . n B 1 54 ASN 54 54 54 ASN ASN B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 ALA 56 56 56 ALA ALA B . n B 1 57 THR 57 57 57 THR THR B . n B 1 58 ASN 58 58 58 ASN ASN B . n B 1 59 ASN 59 59 59 ASN ASN B . n B 1 60 ALA 60 60 60 ALA ALA B . n B 1 61 MET 61 61 61 MET MET B . n B 1 62 GLN 62 62 62 GLN GLN B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 GLU 64 64 64 GLU GLU B . n B 1 65 SER 65 65 65 SER SER B . n B 1 66 ASP 66 66 66 ASP ASP B . n B 1 67 ASP 67 67 67 ASP ASP B . n B 1 68 TYR 68 68 68 TYR TYR B . n B 1 69 ILE 69 69 69 ILE ILE B . n B 1 70 ALA 70 70 70 ALA ALA B . n B 1 71 THR 71 71 71 THR THR B . n B 1 72 ASN 72 72 72 ASN ASN B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 PRO 74 74 74 PRO PRO B . n B 1 75 LEU 75 75 75 LEU LEU B . n B 1 76 LYS 76 76 76 LYS LYS B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 GLY 79 79 79 GLY GLY B . n B 1 80 SER 80 80 80 SER SER B . n B 1 81 CYS 81 81 81 CYS CYS B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 LEU 83 83 83 LEU LEU B . n B 1 84 SER 84 84 84 SER SER B . n B 1 85 GLY 85 85 85 GLY GLY B . n B 1 86 HIS 86 86 86 HIS HIS B . n B 1 87 ASN 87 87 87 ASN ASN B . n B 1 88 LEU 88 88 88 LEU LEU B . n B 1 89 ALA 89 89 89 ALA ALA B . n B 1 90 LYS 90 90 90 LYS LYS B . n B 1 91 HIS 91 91 91 HIS HIS B . n B 1 92 CYS 92 92 92 CYS CYS B . n B 1 93 LEU 93 93 93 LEU LEU B . n B 1 94 HIS 94 94 94 HIS HIS B . n B 1 95 VAL 95 95 95 VAL VAL B . n B 1 96 VAL 96 96 96 VAL VAL B . n B 1 97 GLY 97 97 97 GLY GLY B . n B 1 98 PRO 98 98 98 PRO PRO B . n B 1 99 ASN 99 99 99 ASN ASN B . n B 1 100 VAL 100 100 100 VAL VAL B . n B 1 101 ASN 101 101 101 ASN ASN B . n B 1 102 LYS 102 102 102 LYS LYS B . n B 1 103 GLY 103 103 103 GLY GLY B . n B 1 104 GLU 104 104 104 GLU GLU B . n B 1 105 ASP 105 105 105 ASP ASP B . n B 1 106 ILE 106 106 106 ILE ILE B . n B 1 107 GLN 107 107 107 GLN GLN B . n B 1 108 LEU 108 108 108 LEU LEU B . n B 1 109 LEU 109 109 109 LEU LEU B . n B 1 110 LYS 110 110 110 LYS LYS B . n B 1 111 SER 111 111 111 SER SER B . n B 1 112 ALA 112 112 112 ALA ALA B . n B 1 113 TYR 113 113 113 TYR TYR B . n B 1 114 GLU 114 114 114 GLU GLU B . n B 1 115 ASN 115 115 115 ASN ASN B . n B 1 116 PHE 116 116 116 PHE PHE B . n B 1 117 ASN 117 117 117 ASN ASN B . n B 1 118 GLN 118 118 118 GLN GLN B . n B 1 119 HIS 119 119 119 HIS HIS B . n B 1 120 GLU 120 120 120 GLU GLU B . n B 1 121 VAL 121 121 121 VAL VAL B . n B 1 122 LEU 122 122 122 LEU LEU B . n B 1 123 LEU 123 123 123 LEU LEU B . n B 1 124 ALA 124 124 124 ALA ALA B . n B 1 125 PRO 125 125 125 PRO PRO B . n B 1 126 LEU 126 126 126 LEU LEU B . n B 1 127 LEU 127 127 127 LEU LEU B . n B 1 128 SER 128 128 128 SER SER B . n B 1 129 ALA 129 129 129 ALA ALA B . n B 1 130 GLY 130 130 130 GLY GLY B . n B 1 131 ILE 131 131 131 ILE ILE B . n B 1 132 PHE 132 132 132 PHE PHE B . n B 1 133 GLY 133 133 133 GLY GLY B . n B 1 134 ALA 134 134 134 ALA ALA B . n B 1 135 ASP 135 135 135 ASP ASP B . n B 1 136 PRO 136 136 136 PRO PRO B . n B 1 137 ILE 137 137 137 ILE ILE B . n B 1 138 HIS 138 138 138 HIS HIS B . n B 1 139 SER 139 139 139 SER SER B . n B 1 140 LEU 140 140 140 LEU LEU B . n B 1 141 ARG 141 141 141 ARG ARG B . n B 1 142 VAL 142 142 142 VAL VAL B . n B 1 143 CYS 143 143 143 CYS CYS B . n B 1 144 VAL 144 144 144 VAL VAL B . n B 1 145 ASP 145 145 145 ASP ASP B . n B 1 146 THR 146 146 146 THR THR B . n B 1 147 VAL 147 147 147 VAL VAL B . n B 1 148 ARG 148 148 148 ARG ARG B . n B 1 149 THR 149 149 149 THR THR B . n B 1 150 ASN 150 150 150 ASN ASN B . n B 1 151 VAL 151 151 151 VAL VAL B . n B 1 152 TYR 152 152 152 TYR TYR B . n B 1 153 LEU 153 153 153 LEU LEU B . n B 1 154 ALA 154 154 154 ALA ALA B . n B 1 155 VAL 155 155 155 VAL VAL B . n B 1 156 PHE 156 156 156 PHE PHE B . n B 1 157 ASP 157 157 157 ASP ASP B . n B 1 158 LYS 158 158 158 LYS LYS B . n B 1 159 ASN 159 159 159 ASN ASN B . n B 1 160 LEU 160 160 160 LEU LEU B . n B 1 161 TYR 161 161 161 TYR TYR B . n B 1 162 ASP 162 162 162 ASP ASP B . n B 1 163 LYS 163 163 163 LYS LYS B . n B 1 164 LEU 164 164 164 LEU LEU B . n B 1 165 VAL 165 165 165 VAL VAL B . n B 1 166 SER 166 166 166 SER SER B . n B 1 167 SER 167 167 167 SER SER B . n B 1 168 PHE 168 168 168 PHE PHE B . n B 1 169 LEU 169 169 169 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1CXT 1 201 201 A1CXT LA1 A . D 3 HOH 1 301 164 HOH HOH A . D 3 HOH 2 302 359 HOH HOH A . D 3 HOH 3 303 109 HOH HOH A . D 3 HOH 4 304 285 HOH HOH A . D 3 HOH 5 305 12 HOH HOH A . D 3 HOH 6 306 441 HOH HOH A . D 3 HOH 7 307 96 HOH HOH A . D 3 HOH 8 308 72 HOH HOH A . D 3 HOH 9 309 55 HOH HOH A . D 3 HOH 10 310 2 HOH HOH A . D 3 HOH 11 311 348 HOH HOH A . D 3 HOH 12 312 44 HOH HOH A . D 3 HOH 13 313 78 HOH HOH A . D 3 HOH 14 314 138 HOH HOH A . D 3 HOH 15 315 144 HOH HOH A . D 3 HOH 16 316 169 HOH HOH A . D 3 HOH 17 317 224 HOH HOH A . D 3 HOH 18 318 149 HOH HOH A . D 3 HOH 19 319 19 HOH HOH A . D 3 HOH 20 320 299 HOH HOH A . D 3 HOH 21 321 114 HOH HOH A . D 3 HOH 22 322 95 HOH HOH A . D 3 HOH 23 323 183 HOH HOH A . D 3 HOH 24 324 206 HOH HOH A . D 3 HOH 25 325 568 HOH HOH A . D 3 HOH 26 326 455 HOH HOH A . D 3 HOH 27 327 14 HOH HOH A . D 3 HOH 28 328 28 HOH HOH A . D 3 HOH 29 329 127 HOH HOH A . D 3 HOH 30 330 46 HOH HOH A . D 3 HOH 31 331 53 HOH HOH A . D 3 HOH 32 332 174 HOH HOH A . D 3 HOH 33 333 1 HOH HOH A . D 3 HOH 34 334 23 HOH HOH A . D 3 HOH 35 335 301 HOH HOH A . D 3 HOH 36 336 39 HOH HOH A . D 3 HOH 37 337 25 HOH HOH A . D 3 HOH 38 338 258 HOH HOH A . D 3 HOH 39 339 286 HOH HOH A . D 3 HOH 40 340 180 HOH HOH A . D 3 HOH 41 341 37 HOH HOH A . D 3 HOH 42 342 106 HOH HOH A . D 3 HOH 43 343 7 HOH HOH A . D 3 HOH 44 344 89 HOH HOH A . D 3 HOH 45 345 165 HOH HOH A . D 3 HOH 46 346 128 HOH HOH A . D 3 HOH 47 347 160 HOH HOH A . D 3 HOH 48 348 344 HOH HOH A . D 3 HOH 49 349 5 HOH HOH A . D 3 HOH 50 350 305 HOH HOH A . D 3 HOH 51 351 11 HOH HOH A . D 3 HOH 52 352 103 HOH HOH A . D 3 HOH 53 353 13 HOH HOH A . D 3 HOH 54 354 461 HOH HOH A . D 3 HOH 55 355 93 HOH HOH A . D 3 HOH 56 356 311 HOH HOH A . D 3 HOH 57 357 233 HOH HOH A . D 3 HOH 58 358 172 HOH HOH A . D 3 HOH 59 359 245 HOH HOH A . D 3 HOH 60 360 6 HOH HOH A . D 3 HOH 61 361 387 HOH HOH A . D 3 HOH 62 362 18 HOH HOH A . D 3 HOH 63 363 155 HOH HOH A . D 3 HOH 64 364 307 HOH HOH A . D 3 HOH 65 365 43 HOH HOH A . D 3 HOH 66 366 27 HOH HOH A . D 3 HOH 67 367 10 HOH HOH A . D 3 HOH 68 368 64 HOH HOH A . D 3 HOH 69 369 273 HOH HOH A . D 3 HOH 70 370 79 HOH HOH A . D 3 HOH 71 371 110 HOH HOH A . D 3 HOH 72 372 111 HOH HOH A . D 3 HOH 73 373 542 HOH HOH A . D 3 HOH 74 374 3 HOH HOH A . D 3 HOH 75 375 147 HOH HOH A . D 3 HOH 76 376 394 HOH HOH A . D 3 HOH 77 377 300 HOH HOH A . D 3 HOH 78 378 204 HOH HOH A . D 3 HOH 79 379 121 HOH HOH A . D 3 HOH 80 380 9 HOH HOH A . D 3 HOH 81 381 40 HOH HOH A . D 3 HOH 82 382 189 HOH HOH A . D 3 HOH 83 383 65 HOH HOH A . D 3 HOH 84 384 130 HOH HOH A . D 3 HOH 85 385 35 HOH HOH A . D 3 HOH 86 386 150 HOH HOH A . D 3 HOH 87 387 186 HOH HOH A . D 3 HOH 88 388 209 HOH HOH A . D 3 HOH 89 389 8 HOH HOH A . D 3 HOH 90 390 11 HOH HOH A . D 3 HOH 91 391 318 HOH HOH A . D 3 HOH 92 392 194 HOH HOH A . D 3 HOH 93 393 118 HOH HOH A . D 3 HOH 94 394 57 HOH HOH A . D 3 HOH 95 395 83 HOH HOH A . D 3 HOH 96 396 63 HOH HOH A . D 3 HOH 97 397 16 HOH HOH A . D 3 HOH 98 398 279 HOH HOH A . D 3 HOH 99 399 450 HOH HOH A . D 3 HOH 100 400 66 HOH HOH A . D 3 HOH 101 401 34 HOH HOH A . D 3 HOH 102 402 350 HOH HOH A . D 3 HOH 103 403 234 HOH HOH A . D 3 HOH 104 404 471 HOH HOH A . D 3 HOH 105 405 295 HOH HOH A . D 3 HOH 106 406 74 HOH HOH A . D 3 HOH 107 407 250 HOH HOH A . D 3 HOH 108 408 77 HOH HOH A . D 3 HOH 109 409 304 HOH HOH A . D 3 HOH 110 410 196 HOH HOH A . D 3 HOH 111 411 242 HOH HOH A . D 3 HOH 112 412 102 HOH HOH A . D 3 HOH 113 413 73 HOH HOH A . D 3 HOH 114 414 59 HOH HOH A . D 3 HOH 115 415 22 HOH HOH A . D 3 HOH 116 416 56 HOH HOH A . D 3 HOH 117 417 8 HOH HOH A . D 3 HOH 118 418 519 HOH HOH A . D 3 HOH 119 419 159 HOH HOH A . D 3 HOH 120 420 9 HOH HOH A . D 3 HOH 121 421 32 HOH HOH A . D 3 HOH 122 422 101 HOH HOH A . D 3 HOH 123 423 70 HOH HOH A . D 3 HOH 124 424 5 HOH HOH A . D 3 HOH 125 425 302 HOH HOH A . D 3 HOH 126 426 60 HOH HOH A . D 3 HOH 127 427 171 HOH HOH A . D 3 HOH 128 428 219 HOH HOH A . D 3 HOH 129 429 496 HOH HOH A . D 3 HOH 130 430 21 HOH HOH A . D 3 HOH 131 431 120 HOH HOH A . D 3 HOH 132 432 166 HOH HOH A . D 3 HOH 133 433 272 HOH HOH A . D 3 HOH 134 434 158 HOH HOH A . D 3 HOH 135 435 10 HOH HOH A . D 3 HOH 136 436 1 HOH HOH A . D 3 HOH 137 437 238 HOH HOH A . D 3 HOH 138 438 217 HOH HOH A . D 3 HOH 139 439 90 HOH HOH A . D 3 HOH 140 440 45 HOH HOH A . D 3 HOH 141 441 371 HOH HOH A . D 3 HOH 142 442 292 HOH HOH A . D 3 HOH 143 443 99 HOH HOH A . D 3 HOH 144 444 291 HOH HOH A . D 3 HOH 145 445 98 HOH HOH A . D 3 HOH 146 446 108 HOH HOH A . D 3 HOH 147 447 544 HOH HOH A . D 3 HOH 148 448 407 HOH HOH A . D 3 HOH 149 449 132 HOH HOH A . D 3 HOH 150 450 383 HOH HOH A . D 3 HOH 151 451 62 HOH HOH A . D 3 HOH 152 452 92 HOH HOH A . D 3 HOH 153 453 267 HOH HOH A . D 3 HOH 154 454 4 HOH HOH A . D 3 HOH 155 455 322 HOH HOH A . D 3 HOH 156 456 341 HOH HOH A . D 3 HOH 157 457 13 HOH HOH A . D 3 HOH 158 458 129 HOH HOH A . D 3 HOH 159 459 485 HOH HOH A . D 3 HOH 160 460 7 HOH HOH A . D 3 HOH 161 461 393 HOH HOH A . D 3 HOH 162 462 177 HOH HOH A . D 3 HOH 163 463 3 HOH HOH A . D 3 HOH 164 464 516 HOH HOH A . D 3 HOH 165 465 411 HOH HOH A . D 3 HOH 166 466 207 HOH HOH A . D 3 HOH 167 467 374 HOH HOH A . D 3 HOH 168 468 439 HOH HOH A . D 3 HOH 169 469 212 HOH HOH A . D 3 HOH 170 470 80 HOH HOH A . D 3 HOH 171 471 211 HOH HOH A . D 3 HOH 172 472 113 HOH HOH A . D 3 HOH 173 473 289 HOH HOH A . D 3 HOH 174 474 229 HOH HOH A . D 3 HOH 175 475 406 HOH HOH A . D 3 HOH 176 476 570 HOH HOH A . D 3 HOH 177 477 377 HOH HOH A . D 3 HOH 178 478 335 HOH HOH A . D 3 HOH 179 479 191 HOH HOH A . D 3 HOH 180 480 188 HOH HOH A . D 3 HOH 181 481 261 HOH HOH A . D 3 HOH 182 482 467 HOH HOH A . D 3 HOH 183 483 459 HOH HOH A . D 3 HOH 184 484 104 HOH HOH A . D 3 HOH 185 485 438 HOH HOH A . D 3 HOH 186 486 293 HOH HOH A . D 3 HOH 187 487 309 HOH HOH A . D 3 HOH 188 488 555 HOH HOH A . D 3 HOH 189 489 15 HOH HOH A . D 3 HOH 190 490 192 HOH HOH A . D 3 HOH 191 491 328 HOH HOH A . D 3 HOH 192 492 436 HOH HOH A . D 3 HOH 193 493 484 HOH HOH A . D 3 HOH 194 494 236 HOH HOH A . D 3 HOH 195 495 399 HOH HOH A . D 3 HOH 196 496 464 HOH HOH A . D 3 HOH 197 497 404 HOH HOH A . D 3 HOH 198 498 395 HOH HOH A . D 3 HOH 199 499 247 HOH HOH A . D 3 HOH 200 500 221 HOH HOH A . D 3 HOH 201 501 512 HOH HOH A . D 3 HOH 202 502 226 HOH HOH A . D 3 HOH 203 503 237 HOH HOH A . D 3 HOH 204 504 351 HOH HOH A . D 3 HOH 205 505 290 HOH HOH A . D 3 HOH 206 506 131 HOH HOH A . D 3 HOH 207 507 140 HOH HOH A . D 3 HOH 208 508 340 HOH HOH A . D 3 HOH 209 509 443 HOH HOH A . D 3 HOH 210 510 185 HOH HOH A . D 3 HOH 211 511 198 HOH HOH A . D 3 HOH 212 512 215 HOH HOH A . D 3 HOH 213 513 539 HOH HOH A . D 3 HOH 214 514 343 HOH HOH A . D 3 HOH 215 515 352 HOH HOH A . D 3 HOH 216 516 154 HOH HOH A . D 3 HOH 217 517 326 HOH HOH A . D 3 HOH 218 518 375 HOH HOH A . D 3 HOH 219 519 580 HOH HOH A . E 3 HOH 1 201 246 HOH HOH B . E 3 HOH 2 202 157 HOH HOH B . E 3 HOH 3 203 222 HOH HOH B . E 3 HOH 4 204 445 HOH HOH B . E 3 HOH 5 205 281 HOH HOH B . E 3 HOH 6 206 347 HOH HOH B . E 3 HOH 7 207 68 HOH HOH B . E 3 HOH 8 208 314 HOH HOH B . E 3 HOH 9 209 133 HOH HOH B . E 3 HOH 10 210 51 HOH HOH B . E 3 HOH 11 211 465 HOH HOH B . E 3 HOH 12 212 294 HOH HOH B . E 3 HOH 13 213 369 HOH HOH B . E 3 HOH 14 214 243 HOH HOH B . E 3 HOH 15 215 143 HOH HOH B . E 3 HOH 16 216 346 HOH HOH B . E 3 HOH 17 217 142 HOH HOH B . E 3 HOH 18 218 71 HOH HOH B . E 3 HOH 19 219 75 HOH HOH B . E 3 HOH 20 220 298 HOH HOH B . E 3 HOH 21 221 324 HOH HOH B . E 3 HOH 22 222 179 HOH HOH B . E 3 HOH 23 223 2 HOH HOH B . E 3 HOH 24 224 124 HOH HOH B . E 3 HOH 25 225 61 HOH HOH B . E 3 HOH 26 226 112 HOH HOH B . E 3 HOH 27 227 228 HOH HOH B . E 3 HOH 28 228 84 HOH HOH B . E 3 HOH 29 229 357 HOH HOH B . E 3 HOH 30 230 69 HOH HOH B . E 3 HOH 31 231 507 HOH HOH B . E 3 HOH 32 232 373 HOH HOH B . E 3 HOH 33 233 321 HOH HOH B . E 3 HOH 34 234 355 HOH HOH B . E 3 HOH 35 235 88 HOH HOH B . E 3 HOH 36 236 76 HOH HOH B . E 3 HOH 37 237 423 HOH HOH B . E 3 HOH 38 238 31 HOH HOH B . E 3 HOH 39 239 17 HOH HOH B . E 3 HOH 40 240 167 HOH HOH B . E 3 HOH 41 241 151 HOH HOH B . E 3 HOH 42 242 4 HOH HOH B . E 3 HOH 43 243 424 HOH HOH B . E 3 HOH 44 244 87 HOH HOH B . E 3 HOH 45 245 141 HOH HOH B . E 3 HOH 46 246 190 HOH HOH B . E 3 HOH 47 247 137 HOH HOH B . E 3 HOH 48 248 270 HOH HOH B . E 3 HOH 49 249 320 HOH HOH B . E 3 HOH 50 250 283 HOH HOH B . E 3 HOH 51 251 115 HOH HOH B . E 3 HOH 52 252 252 HOH HOH B . E 3 HOH 53 253 36 HOH HOH B . E 3 HOH 54 254 473 HOH HOH B . E 3 HOH 55 255 152 HOH HOH B . E 3 HOH 56 256 139 HOH HOH B . E 3 HOH 57 257 49 HOH HOH B . E 3 HOH 58 258 230 HOH HOH B . E 3 HOH 59 259 50 HOH HOH B . E 3 HOH 60 260 386 HOH HOH B . E 3 HOH 61 261 38 HOH HOH B . E 3 HOH 62 262 419 HOH HOH B . E 3 HOH 63 263 214 HOH HOH B . E 3 HOH 64 264 6 HOH HOH B . E 3 HOH 65 265 367 HOH HOH B . E 3 HOH 66 266 148 HOH HOH B . E 3 HOH 67 267 48 HOH HOH B . E 3 HOH 68 268 460 HOH HOH B . E 3 HOH 69 269 125 HOH HOH B . E 3 HOH 70 270 107 HOH HOH B . E 3 HOH 71 271 12 HOH HOH B . E 3 HOH 72 272 380 HOH HOH B . E 3 HOH 73 273 253 HOH HOH B . E 3 HOH 74 274 269 HOH HOH B . E 3 HOH 75 275 278 HOH HOH B . E 3 HOH 76 276 85 HOH HOH B . E 3 HOH 77 277 244 HOH HOH B . E 3 HOH 78 278 16 HOH HOH B . E 3 HOH 79 279 94 HOH HOH B . E 3 HOH 80 280 122 HOH HOH B . E 3 HOH 81 281 353 HOH HOH B . E 3 HOH 82 282 67 HOH HOH B . E 3 HOH 83 283 47 HOH HOH B . E 3 HOH 84 284 239 HOH HOH B . E 3 HOH 85 285 248 HOH HOH B . E 3 HOH 86 286 173 HOH HOH B . E 3 HOH 87 287 515 HOH HOH B . E 3 HOH 88 288 195 HOH HOH B . E 3 HOH 89 289 193 HOH HOH B . E 3 HOH 90 290 15 HOH HOH B . E 3 HOH 91 291 117 HOH HOH B . E 3 HOH 92 292 331 HOH HOH B . E 3 HOH 93 293 162 HOH HOH B . E 3 HOH 94 294 232 HOH HOH B . E 3 HOH 95 295 203 HOH HOH B . E 3 HOH 96 296 452 HOH HOH B . E 3 HOH 97 297 145 HOH HOH B . E 3 HOH 98 298 287 HOH HOH B . E 3 HOH 99 299 123 HOH HOH B . E 3 HOH 100 300 14 HOH HOH B . E 3 HOH 101 301 218 HOH HOH B . E 3 HOH 102 302 462 HOH HOH B . E 3 HOH 103 303 447 HOH HOH B . E 3 HOH 104 304 277 HOH HOH B . E 3 HOH 105 305 33 HOH HOH B . E 3 HOH 106 306 197 HOH HOH B . E 3 HOH 107 307 116 HOH HOH B . E 3 HOH 108 308 86 HOH HOH B . E 3 HOH 109 309 263 HOH HOH B . E 3 HOH 110 310 26 HOH HOH B . E 3 HOH 111 311 184 HOH HOH B . E 3 HOH 112 312 97 HOH HOH B . E 3 HOH 113 313 135 HOH HOH B . E 3 HOH 114 314 255 HOH HOH B . E 3 HOH 115 315 175 HOH HOH B . E 3 HOH 116 316 187 HOH HOH B . E 3 HOH 117 317 153 HOH HOH B . E 3 HOH 118 318 487 HOH HOH B . E 3 HOH 119 319 42 HOH HOH B . E 3 HOH 120 320 200 HOH HOH B . E 3 HOH 121 321 339 HOH HOH B . E 3 HOH 122 322 41 HOH HOH B . E 3 HOH 123 323 262 HOH HOH B . E 3 HOH 124 324 29 HOH HOH B . E 3 HOH 125 325 82 HOH HOH B . E 3 HOH 126 326 216 HOH HOH B . E 3 HOH 127 327 327 HOH HOH B . E 3 HOH 128 328 126 HOH HOH B . E 3 HOH 129 329 176 HOH HOH B . E 3 HOH 130 330 265 HOH HOH B . E 3 HOH 131 331 119 HOH HOH B . E 3 HOH 132 332 24 HOH HOH B . E 3 HOH 133 333 382 HOH HOH B . E 3 HOH 134 334 205 HOH HOH B . E 3 HOH 135 335 297 HOH HOH B . E 3 HOH 136 336 20 HOH HOH B . E 3 HOH 137 337 227 HOH HOH B . E 3 HOH 138 338 54 HOH HOH B . E 3 HOH 139 339 52 HOH HOH B . E 3 HOH 140 340 91 HOH HOH B . E 3 HOH 141 341 240 HOH HOH B . E 3 HOH 142 342 389 HOH HOH B . E 3 HOH 143 343 182 HOH HOH B . E 3 HOH 144 344 105 HOH HOH B . E 3 HOH 145 345 136 HOH HOH B . E 3 HOH 146 346 58 HOH HOH B . E 3 HOH 147 347 276 HOH HOH B . E 3 HOH 148 348 181 HOH HOH B . E 3 HOH 149 349 30 HOH HOH B . E 3 HOH 150 350 410 HOH HOH B . E 3 HOH 151 351 202 HOH HOH B . E 3 HOH 152 352 554 HOH HOH B . E 3 HOH 153 353 513 HOH HOH B . E 3 HOH 154 354 100 HOH HOH B . E 3 HOH 155 355 510 HOH HOH B . E 3 HOH 156 356 468 HOH HOH B . E 3 HOH 157 357 296 HOH HOH B . E 3 HOH 158 358 163 HOH HOH B . E 3 HOH 159 359 81 HOH HOH B . E 3 HOH 160 360 161 HOH HOH B . E 3 HOH 161 361 391 HOH HOH B . E 3 HOH 162 362 556 HOH HOH B . E 3 HOH 163 363 530 HOH HOH B . E 3 HOH 164 364 280 HOH HOH B . E 3 HOH 165 365 523 HOH HOH B . E 3 HOH 166 366 319 HOH HOH B . E 3 HOH 167 367 312 HOH HOH B . E 3 HOH 168 368 449 HOH HOH B . E 3 HOH 169 369 517 HOH HOH B . E 3 HOH 170 370 354 HOH HOH B . E 3 HOH 171 371 481 HOH HOH B . E 3 HOH 172 372 360 HOH HOH B . E 3 HOH 173 373 264 HOH HOH B . E 3 HOH 174 374 432 HOH HOH B . E 3 HOH 175 375 409 HOH HOH B . E 3 HOH 176 376 448 HOH HOH B . E 3 HOH 177 377 325 HOH HOH B . E 3 HOH 178 378 466 HOH HOH B . E 3 HOH 179 379 201 HOH HOH B . E 3 HOH 180 380 400 HOH HOH B . E 3 HOH 181 381 156 HOH HOH B . E 3 HOH 182 382 168 HOH HOH B . E 3 HOH 183 383 402 HOH HOH B . E 3 HOH 184 384 388 HOH HOH B . E 3 HOH 185 385 199 HOH HOH B . E 3 HOH 186 386 472 HOH HOH B . E 3 HOH 187 387 333 HOH HOH B . E 3 HOH 188 388 486 HOH HOH B . E 3 HOH 189 389 372 HOH HOH B . E 3 HOH 190 390 420 HOH HOH B . E 3 HOH 191 391 342 HOH HOH B . E 3 HOH 192 392 315 HOH HOH B . E 3 HOH 193 393 435 HOH HOH B . E 3 HOH 194 394 426 HOH HOH B . E 3 HOH 195 395 576 HOH HOH B . E 3 HOH 196 396 323 HOH HOH B . E 3 HOH 197 397 474 HOH HOH B . E 3 HOH 198 398 146 HOH HOH B . E 3 HOH 199 399 392 HOH HOH B . E 3 HOH 200 400 223 HOH HOH B . E 3 HOH 201 401 178 HOH HOH B . E 3 HOH 202 402 284 HOH HOH B . E 3 HOH 203 403 170 HOH HOH B . E 3 HOH 204 404 370 HOH HOH B . E 3 HOH 205 405 134 HOH HOH B . E 3 HOH 206 406 213 HOH HOH B . E 3 HOH 207 407 349 HOH HOH B . E 3 HOH 208 408 361 HOH HOH B . E 3 HOH 209 409 469 HOH HOH B . E 3 HOH 210 410 275 HOH HOH B . E 3 HOH 211 411 493 HOH HOH B . E 3 HOH 212 412 338 HOH HOH B . E 3 HOH 213 413 413 HOH HOH B . E 3 HOH 214 414 274 HOH HOH B . E 3 HOH 215 415 345 HOH HOH B . E 3 HOH 216 416 363 HOH HOH B . E 3 HOH 217 417 564 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.21.2_5419 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 Aimless 0.8.2 14/06/24 program 'Phil Evans' ? 'data scaling' http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? ? 3 PDB_EXTRACT 3.28 'Apr. 15, 2021' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS 'Jan 19, 2025 BUILT=20250430' 'Jan. 19, 2025' program 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de 'data reduction' http://xds.mpimf-heidelberg.mpg.de ? ? 5 PHASER 2.8.3 'May 17, 2020' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing https://www.phaser.cimr.cam.ac.uk/index.php/Phaser_Crystallographic_Software ? ? # _cell.entry_id 13RK _cell.length_a 88.763 _cell.length_b 88.763 _cell.length_c 39.705 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 13RK _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 # _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 _exptl.entry_id 13RK # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_percent_sol 42.92 _exptl_crystal.density_meas ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.temp 292 _exptl_crystal_grow.pdbx_details '100 mM CHES, 28% PEG 3000' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp_details ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.pdbx_collection_date 2023-07-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_scattering_type x-ray _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.88557 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_wavelength_list 0.88557 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 13RK _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 44.380 _reflns.d_resolution_high 1.030 _reflns.number_obs 152793 _reflns.number_all ? _reflns.percent_possible_obs 100.000 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.400 _reflns.B_iso_Wilson_estimate 13.020 _reflns.pdbx_redundancy 6.500 _reflns.pdbx_Rrim_I_all 0.056 _reflns.pdbx_Rpim_I_all 0.022 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 991053 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.030 1.050 ? 46379 7552 ? 2.819 ? ? ? 6.100 ? 0.700 ? ? ? ? ? ? 99.500 3.079 1.226 0.433 1 2 5.640 44.380 ? 6866 1006 ? 0.025 ? ? ? 6.800 ? 68.100 ? ? ? ? ? ? 99.800 0.027 0.010 0.999 # _refine.entry_id 13RK _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.0300 _refine.ls_d_res_low 39.7000 _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8800 _refine.ls_number_reflns_obs 152647 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1655 _refine.ls_R_factor_R_work 0.1644 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1856 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8400 _refine.ls_number_reflns_R_free 7390 _refine.ls_number_reflns_R_work 145257 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 21.5081 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1500 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 65.600 _refine.B_iso_min 8.490 _refine.pdbx_overall_phase_error 25.9900 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.0300 _refine_hist.d_res_low 39.7000 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 436 _refine_hist.number_atoms_total 3022 _refine_hist.pdbx_number_residues_total 336 _refine_hist.pdbx_B_iso_mean_ligand 19.15 _refine_hist.pdbx_B_iso_mean_solvent 32.99 _refine_hist.pdbx_number_atoms_protein 2542 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id 1.0300 1.0400 30 99.0000 4763 . 0.5191 0.4783 . 256 0.0000 5019 . 'X-RAY DIFFRACTION' 1.0400 1.0500 30 100.0000 4834 . 0.4551 0.4728 . 250 0.0000 5084 . 'X-RAY DIFFRACTION' 1.0500 1.0700 30 100.0000 4765 . 0.4316 0.4334 . 302 0.0000 5067 . 'X-RAY DIFFRACTION' 1.0700 1.0800 30 100.0000 4771 . 0.3881 0.4275 . 213 0.0000 4984 . 'X-RAY DIFFRACTION' 1.0800 1.0900 30 100.0000 4855 . 0.3578 0.4036 . 246 0.0000 5101 . 'X-RAY DIFFRACTION' 1.0900 1.1100 30 100.0000 4848 . 0.3400 0.3682 . 235 0.0000 5083 . 'X-RAY DIFFRACTION' 1.1100 1.1300 30 100.0000 4820 . 0.3141 0.3114 . 268 0.0000 5088 . 'X-RAY DIFFRACTION' 1.1300 1.1400 30 100.0000 4826 . 0.2861 0.3054 . 207 0.0000 5033 . 'X-RAY DIFFRACTION' 1.1400 1.1600 30 100.0000 4798 . 0.2608 0.2934 . 237 0.0000 5035 . 'X-RAY DIFFRACTION' 1.1600 1.1800 30 100.0000 4845 . 0.2453 0.2624 . 236 0.0000 5081 . 'X-RAY DIFFRACTION' 1.1800 1.2000 30 100.0000 4891 . 0.2262 0.2648 . 246 0.0000 5137 . 'X-RAY DIFFRACTION' 1.2000 1.2200 30 100.0000 4737 . 0.2061 0.2423 . 279 0.0000 5016 . 'X-RAY DIFFRACTION' 1.2200 1.2400 30 100.0000 4845 . 0.1987 0.2211 . 221 0.0000 5066 . 'X-RAY DIFFRACTION' 1.2400 1.2700 30 100.0000 4881 . 0.1895 0.2117 . 214 0.0000 5095 . 'X-RAY DIFFRACTION' 1.2700 1.3000 30 100.0000 4779 . 0.1786 0.2173 . 254 0.0000 5033 . 'X-RAY DIFFRACTION' 1.3000 1.3300 30 100.0000 4834 . 0.1721 0.2016 . 271 0.0000 5105 . 'X-RAY DIFFRACTION' 1.3300 1.3600 30 100.0000 4814 . 0.1667 0.1876 . 255 0.0000 5069 . 'X-RAY DIFFRACTION' 1.3600 1.4000 30 100.0000 4801 . 0.1506 0.2020 . 239 0.0000 5040 . 'X-RAY DIFFRACTION' 1.4000 1.4400 30 100.0000 4867 . 0.1439 0.2072 . 229 0.0000 5096 . 'X-RAY DIFFRACTION' 1.4400 1.4900 30 100.0000 4842 . 0.1364 0.1384 . 238 0.0000 5080 . 'X-RAY DIFFRACTION' 1.4900 1.5400 30 100.0000 4853 . 0.1296 0.1565 . 244 0.0000 5097 . 'X-RAY DIFFRACTION' 1.5400 1.6000 30 100.0000 4812 . 0.1240 0.1426 . 271 0.0000 5083 . 'X-RAY DIFFRACTION' 1.6000 1.6700 30 100.0000 4886 . 0.1249 0.1356 . 232 0.0000 5118 . 'X-RAY DIFFRACTION' 1.6700 1.7600 30 100.0000 4872 . 0.1316 0.1589 . 218 0.0000 5090 . 'X-RAY DIFFRACTION' 1.7600 1.8700 30 100.0000 4850 . 0.1347 0.1553 . 264 0.0000 5114 . 'X-RAY DIFFRACTION' 1.8700 2.0200 30 100.0000 4850 . 0.1356 0.1546 . 258 0.0000 5108 . 'X-RAY DIFFRACTION' 2.0200 2.2200 30 100.0000 4860 . 0.1388 0.1437 . 280 0.0000 5140 . 'X-RAY DIFFRACTION' 2.2200 2.5400 30 100.0000 4884 . 0.1403 0.1506 . 245 0.0000 5129 . 'X-RAY DIFFRACTION' 2.5400 3.2000 30 100.0000 4932 . 0.1528 0.1822 . 232 0.0000 5164 . 'X-RAY DIFFRACTION' 3.2000 39.7000 30 100.0000 5042 . 0.1532 0.1795 . 250 0.0000 5292 . 'X-RAY DIFFRACTION' # _struct.entry_id 13RK _struct.title 'PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with AVI-0004052' _struct.pdbx_CASP_flag ? _struct.pdbx_model_details ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 13RK _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'Macrodomain, ADP-ribose, SARS-CoV-2, fragment-based drug discovery, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code R1AB_SARS2 _struct_ref.pdbx_db_accession P0DTD1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV LSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD KLVSSFL ; _struct_ref.pdbx_align_begin 1025 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 13RK A 3 ? 169 ? P0DTD1 1025 ? 1191 ? 3 169 2 1 13RK B 3 ? 169 ? P0DTD1 1025 ? 1191 ? 3 169 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 13RK SER A 1 ? UNP P0DTD1 ? ? 'expression tag' 1 1 1 13RK MET A 2 ? UNP P0DTD1 ? ? 'expression tag' 2 2 2 13RK SER B 1 ? UNP P0DTD1 ? ? 'expression tag' 1 3 2 13RK MET B 2 ? UNP P0DTD1 ? ? 'expression tag' 2 4 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D 2 1 B,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 22 ? LYS A 31 ? ASP A 22 LYS A 31 1 ? 10 HELX_P HELX_P2 AA2 GLY A 47 ? THR A 57 ? GLY A 47 THR A 57 1 ? 11 HELX_P HELX_P3 AA3 ASN A 59 ? GLY A 73 ? ASN A 59 GLY A 73 1 ? 15 HELX_P HELX_P4 AA4 ASN A 99 ? GLY A 103 ? ASN A 99 GLY A 103 5 ? 5 HELX_P HELX_P5 AA5 GLN A 107 ? ASN A 115 ? GLN A 107 ASN A 115 1 ? 9 HELX_P HELX_P6 AA6 PHE A 116 ? HIS A 119 ? PHE A 116 HIS A 119 5 ? 4 HELX_P HELX_P7 AA7 ALA A 129 ? GLY A 133 ? ALA A 129 GLY A 133 5 ? 5 HELX_P HELX_P8 AA8 ASP A 135 ? VAL A 147 ? ASP A 135 VAL A 147 1 ? 13 HELX_P HELX_P9 AA9 ASP A 157 ? SER A 167 ? ASP A 157 SER A 167 1 ? 11 HELX_P HELX_P10 AB1 ASP B 22 ? LYS B 31 ? ASP B 22 LYS B 31 1 ? 10 HELX_P HELX_P11 AB2 GLY B 47 ? THR B 57 ? GLY B 47 THR B 57 1 ? 11 HELX_P HELX_P12 AB3 ASN B 59 ? GLY B 73 ? ASN B 59 GLY B 73 1 ? 15 HELX_P HELX_P13 AB4 ASN B 99 ? GLY B 103 ? ASN B 99 GLY B 103 5 ? 5 HELX_P HELX_P14 AB5 ASP B 105 ? GLN B 107 ? ASP B 105 GLN B 107 5 ? 3 HELX_P HELX_P15 AB6 LEU B 108 ? ASN B 115 ? LEU B 108 ASN B 115 1 ? 8 HELX_P HELX_P16 AB7 PHE B 116 ? HIS B 119 ? PHE B 116 HIS B 119 5 ? 4 HELX_P HELX_P17 AB8 ALA B 129 ? GLY B 133 ? ALA B 129 GLY B 133 5 ? 5 HELX_P HELX_P18 AB9 ASP B 135 ? VAL B 147 ? ASP B 135 VAL B 147 1 ? 13 HELX_P HELX_P19 AC1 ASP B 157 ? LEU B 169 ? ASP B 157 LEU B 169 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 3 ? AA3 ? 4 ? AA4 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 10 ? LYS A 11 ? LEU A 10 LYS A 11 AA1 2 VAL A 16 ? ASN A 20 ? VAL A 16 ASN A 20 AA1 3 ASN A 150 ? VAL A 155 ? ASN A 150 VAL A 155 AA1 4 VAL A 121 ? ALA A 124 ? VAL A 121 ALA A 124 AA2 1 VAL A 34 ? ALA A 38 ? VAL A 34 ALA A 38 AA2 2 HIS A 91 ? VAL A 95 ? HIS A 91 VAL A 95 AA2 3 SER A 80 ? SER A 84 ? SER A 80 SER A 84 AA3 1 LEU B 10 ? LYS B 11 ? LEU B 10 LYS B 11 AA3 2 VAL B 16 ? ASN B 20 ? VAL B 16 ASN B 20 AA3 3 ASN B 150 ? VAL B 155 ? ASN B 150 VAL B 155 AA3 4 VAL B 121 ? ALA B 124 ? VAL B 121 ALA B 124 AA4 1 VAL B 34 ? ALA B 38 ? VAL B 34 ALA B 38 AA4 2 HIS B 91 ? VAL B 95 ? HIS B 91 VAL B 95 AA4 3 SER B 80 ? SER B 84 ? SER B 80 SER B 84 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 10 ? N LEU A 10 O ILE A 18 ? O ILE A 18 AA1 2 3 N LYS A 19 ? N LYS A 19 O VAL A 155 ? O VAL A 155 AA1 3 4 O TYR A 152 ? O TYR A 152 N LEU A 122 ? N LEU A 122 AA2 1 2 N ASN A 37 ? N ASN A 37 O VAL A 95 ? O VAL A 95 AA2 2 3 O CYS A 92 ? O CYS A 92 N LEU A 83 ? N LEU A 83 AA3 1 2 N LEU B 10 ? N LEU B 10 O ILE B 18 ? O ILE B 18 AA3 2 3 N TYR B 17 ? N TYR B 17 O LEU B 153 ? O LEU B 153 AA3 3 4 O TYR B 152 ? O TYR B 152 N LEU B 122 ? N LEU B 122 AA4 1 2 N ASN B 37 ? N ASN B 37 O VAL B 95 ? O VAL B 95 AA4 2 3 O CYS B 92 ? O CYS B 92 N LEU B 83 ? N LEU B 83 # _pdbx_entry_details.entry_id 13RK _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 86 ? ? 56.81 -133.39 2 1 SER A 128 ? B 67.03 -0.49 3 1 HIS B 86 ? ? 58.17 -128.72 # _phasing.method MR # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 417 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.90 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 1 ? A SER 1 2 1 Y 1 A MET 2 ? A MET 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1CXT N2 N Y N 1 A1CXT C3 C Y N 2 A1CXT C6 C Y N 3 A1CXT C9 C N N 4 A1CXT C12 C N N 5 A1CXT C14 C Y N 6 A1CXT C17 C N N 7 A1CXT C1 C N N 8 A1CXT C10 C N N 9 A1CXT C11 C N N 10 A1CXT C13 C N N 11 A1CXT C15 C Y N 12 A1CXT C16 C Y N 13 A1CXT C2 C Y N 14 A1CXT C4 C Y N 15 A1CXT C5 C Y N 16 A1CXT C7 C Y N 17 A1CXT C8 C N N 18 A1CXT N1 N Y N 19 A1CXT N3 N N N 20 A1CXT N4 N N N 21 A1CXT N5 N Y N 22 A1CXT N6 N Y N 23 A1CXT N7 N Y N 24 A1CXT N8 N N N 25 A1CXT O1 O N N 26 A1CXT H7 H N N 27 A1CXT H8 H N N 28 A1CXT H13 H N N 29 A1CXT H11 H N N 30 A1CXT H12 H N N 31 A1CXT H17 H N N 32 A1CXT H1 H N N 33 A1CXT H2 H N N 34 A1CXT H3 H N N 35 A1CXT H10 H N N 36 A1CXT H9 H N N 37 A1CXT H15 H N N 38 A1CXT H16 H N N 39 A1CXT H14 H N N 40 A1CXT H4 H N N 41 A1CXT H5 H N N 42 A1CXT H6 H N N 43 A1CXT H18 H N N 44 ALA N N N N 45 ALA CA C N S 46 ALA C C N N 47 ALA O O N N 48 ALA CB C N N 49 ALA OXT O N N 50 ALA H H N N 51 ALA H2 H N N 52 ALA HA H N N 53 ALA HB1 H N N 54 ALA HB2 H N N 55 ALA HB3 H N N 56 ALA HXT H N N 57 ARG N N N N 58 ARG CA C N S 59 ARG C C N N 60 ARG O O N N 61 ARG CB C N N 62 ARG CG C N N 63 ARG CD C N N 64 ARG NE N N N 65 ARG CZ C N N 66 ARG NH1 N N N 67 ARG NH2 N N N 68 ARG OXT O N N 69 ARG H H N N 70 ARG H2 H N N 71 ARG HA H N N 72 ARG HB2 H N N 73 ARG HB3 H N N 74 ARG HG2 H N N 75 ARG HG3 H N N 76 ARG HD2 H N N 77 ARG HD3 H N N 78 ARG HE H N N 79 ARG HH11 H N N 80 ARG HH12 H N N 81 ARG HH21 H N N 82 ARG HH22 H N N 83 ARG HXT H N N 84 ASN N N N N 85 ASN CA C N S 86 ASN C C N N 87 ASN O O N N 88 ASN CB C N N 89 ASN CG C N N 90 ASN OD1 O N N 91 ASN ND2 N N N 92 ASN OXT O N N 93 ASN H H N N 94 ASN H2 H N N 95 ASN HA H N N 96 ASN HB2 H N N 97 ASN HB3 H N N 98 ASN HD21 H N N 99 ASN HD22 H N N 100 ASN HXT H N N 101 ASP N N N N 102 ASP CA C N S 103 ASP C C N N 104 ASP O O N N 105 ASP CB C N N 106 ASP CG C N N 107 ASP OD1 O N N 108 ASP OD2 O N N 109 ASP OXT O N N 110 ASP H H N N 111 ASP H2 H N N 112 ASP HA H N N 113 ASP HB2 H N N 114 ASP HB3 H N N 115 ASP HD2 H N N 116 ASP HXT H N N 117 CYS N N N N 118 CYS CA C N R 119 CYS C C N N 120 CYS O O N N 121 CYS CB C N N 122 CYS SG S N N 123 CYS OXT O N N 124 CYS H H N N 125 CYS H2 H N N 126 CYS HA H N N 127 CYS HB2 H N N 128 CYS HB3 H N N 129 CYS HG H N N 130 CYS HXT H N N 131 GLN N N N N 132 GLN CA C N S 133 GLN C C N N 134 GLN O O N N 135 GLN CB C N N 136 GLN CG C N N 137 GLN CD C N N 138 GLN OE1 O N N 139 GLN NE2 N N N 140 GLN OXT O N N 141 GLN H H N N 142 GLN H2 H N N 143 GLN HA H N N 144 GLN HB2 H N N 145 GLN HB3 H N N 146 GLN HG2 H N N 147 GLN HG3 H N N 148 GLN HE21 H N N 149 GLN HE22 H N N 150 GLN HXT H N N 151 GLU N N N N 152 GLU CA C N S 153 GLU C C N N 154 GLU O O N N 155 GLU CB C N N 156 GLU CG C N N 157 GLU CD C N N 158 GLU OE1 O N N 159 GLU OE2 O N N 160 GLU OXT O N N 161 GLU H H N N 162 GLU H2 H N N 163 GLU HA H N N 164 GLU HB2 H N N 165 GLU HB3 H N N 166 GLU HG2 H N N 167 GLU HG3 H N N 168 GLU HE2 H N N 169 GLU HXT H N N 170 GLY N N N N 171 GLY CA C N N 172 GLY C C N N 173 GLY O O N N 174 GLY OXT O N N 175 GLY H H N N 176 GLY H2 H N N 177 GLY HA2 H N N 178 GLY HA3 H N N 179 GLY HXT H N N 180 HIS N N N N 181 HIS CA C N S 182 HIS C C N N 183 HIS O O N N 184 HIS CB C N N 185 HIS CG C Y N 186 HIS ND1 N Y N 187 HIS CD2 C Y N 188 HIS CE1 C Y N 189 HIS NE2 N Y N 190 HIS OXT O N N 191 HIS H H N N 192 HIS H2 H N N 193 HIS HA H N N 194 HIS HB2 H N N 195 HIS HB3 H N N 196 HIS HD1 H N N 197 HIS HD2 H N N 198 HIS HE1 H N N 199 HIS HE2 H N N 200 HIS HXT H N N 201 HOH O O N N 202 HOH H1 H N N 203 HOH H2 H N N 204 ILE N N N N 205 ILE CA C N S 206 ILE C C N N 207 ILE O O N N 208 ILE CB C N S 209 ILE CG1 C N N 210 ILE CG2 C N N 211 ILE CD1 C N N 212 ILE OXT O N N 213 ILE H H N N 214 ILE H2 H N N 215 ILE HA H N N 216 ILE HB H N N 217 ILE HG12 H N N 218 ILE HG13 H N N 219 ILE HG21 H N N 220 ILE HG22 H N N 221 ILE HG23 H N N 222 ILE HD11 H N N 223 ILE HD12 H N N 224 ILE HD13 H N N 225 ILE HXT H N N 226 LEU N N N N 227 LEU CA C N S 228 LEU C C N N 229 LEU O O N N 230 LEU CB C N N 231 LEU CG C N N 232 LEU CD1 C N N 233 LEU CD2 C N N 234 LEU OXT O N N 235 LEU H H N N 236 LEU H2 H N N 237 LEU HA H N N 238 LEU HB2 H N N 239 LEU HB3 H N N 240 LEU HG H N N 241 LEU HD11 H N N 242 LEU HD12 H N N 243 LEU HD13 H N N 244 LEU HD21 H N N 245 LEU HD22 H N N 246 LEU HD23 H N N 247 LEU HXT H N N 248 LYS N N N N 249 LYS CA C N S 250 LYS C C N N 251 LYS O O N N 252 LYS CB C N N 253 LYS CG C N N 254 LYS CD C N N 255 LYS CE C N N 256 LYS NZ N N N 257 LYS OXT O N N 258 LYS H H N N 259 LYS H2 H N N 260 LYS HA H N N 261 LYS HB2 H N N 262 LYS HB3 H N N 263 LYS HG2 H N N 264 LYS HG3 H N N 265 LYS HD2 H N N 266 LYS HD3 H N N 267 LYS HE2 H N N 268 LYS HE3 H N N 269 LYS HZ1 H N N 270 LYS HZ2 H N N 271 LYS HZ3 H N N 272 LYS HXT H N N 273 MET N N N N 274 MET CA C N S 275 MET C C N N 276 MET O O N N 277 MET CB C N N 278 MET CG C N N 279 MET SD S N N 280 MET CE C N N 281 MET OXT O N N 282 MET H H N N 283 MET H2 H N N 284 MET HA H N N 285 MET HB2 H N N 286 MET HB3 H N N 287 MET HG2 H N N 288 MET HG3 H N N 289 MET HE1 H N N 290 MET HE2 H N N 291 MET HE3 H N N 292 MET HXT H N N 293 PHE N N N N 294 PHE CA C N S 295 PHE C C N N 296 PHE O O N N 297 PHE CB C N N 298 PHE CG C Y N 299 PHE CD1 C Y N 300 PHE CD2 C Y N 301 PHE CE1 C Y N 302 PHE CE2 C Y N 303 PHE CZ C Y N 304 PHE OXT O N N 305 PHE H H N N 306 PHE H2 H N N 307 PHE HA H N N 308 PHE HB2 H N N 309 PHE HB3 H N N 310 PHE HD1 H N N 311 PHE HD2 H N N 312 PHE HE1 H N N 313 PHE HE2 H N N 314 PHE HZ H N N 315 PHE HXT H N N 316 PRO N N N N 317 PRO CA C N S 318 PRO C C N N 319 PRO O O N N 320 PRO CB C N N 321 PRO CG C N N 322 PRO CD C N N 323 PRO OXT O N N 324 PRO H H N N 325 PRO HA H N N 326 PRO HB2 H N N 327 PRO HB3 H N N 328 PRO HG2 H N N 329 PRO HG3 H N N 330 PRO HD2 H N N 331 PRO HD3 H N N 332 PRO HXT H N N 333 SER N N N N 334 SER CA C N S 335 SER C C N N 336 SER O O N N 337 SER CB C N N 338 SER OG O N N 339 SER OXT O N N 340 SER H H N N 341 SER H2 H N N 342 SER HA H N N 343 SER HB2 H N N 344 SER HB3 H N N 345 SER HG H N N 346 SER HXT H N N 347 THR N N N N 348 THR CA C N S 349 THR C C N N 350 THR O O N N 351 THR CB C N R 352 THR OG1 O N N 353 THR CG2 C N N 354 THR OXT O N N 355 THR H H N N 356 THR H2 H N N 357 THR HA H N N 358 THR HB H N N 359 THR HG1 H N N 360 THR HG21 H N N 361 THR HG22 H N N 362 THR HG23 H N N 363 THR HXT H N N 364 TYR N N N N 365 TYR CA C N S 366 TYR C C N N 367 TYR O O N N 368 TYR CB C N N 369 TYR CG C Y N 370 TYR CD1 C Y N 371 TYR CD2 C Y N 372 TYR CE1 C Y N 373 TYR CE2 C Y N 374 TYR CZ C Y N 375 TYR OH O N N 376 TYR OXT O N N 377 TYR H H N N 378 TYR H2 H N N 379 TYR HA H N N 380 TYR HB2 H N N 381 TYR HB3 H N N 382 TYR HD1 H N N 383 TYR HD2 H N N 384 TYR HE1 H N N 385 TYR HE2 H N N 386 TYR HH H N N 387 TYR HXT H N N 388 VAL N N N N 389 VAL CA C N S 390 VAL C C N N 391 VAL O O N N 392 VAL CB C N N 393 VAL CG1 C N N 394 VAL CG2 C N N 395 VAL OXT O N N 396 VAL H H N N 397 VAL H2 H N N 398 VAL HA H N N 399 VAL HB H N N 400 VAL HG11 H N N 401 VAL HG12 H N N 402 VAL HG13 H N N 403 VAL HG21 H N N 404 VAL HG22 H N N 405 VAL HG23 H N N 406 VAL HXT H N N 407 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CXT C12 C11 sing N N 1 A1CXT C10 C11 sing N N 2 A1CXT C10 C9 sing N N 3 A1CXT C11 C13 sing N N 4 A1CXT C11 N4 sing N N 5 A1CXT C9 C8 sing N N 6 A1CXT N4 C8 sing N N 7 A1CXT N4 N3 sing N N 8 A1CXT C8 O1 doub N N 9 A1CXT N3 C7 sing N N 10 A1CXT N8 C17 trip N N 11 A1CXT C17 C16 sing N N 12 A1CXT C7 N5 doub Y N 13 A1CXT C7 C6 sing Y N 14 A1CXT C5 C6 sing Y N 15 A1CXT C5 C4 doub Y N 16 A1CXT N5 C14 sing Y N 17 A1CXT C6 C15 doub Y N 18 A1CXT C16 N1 sing Y N 19 A1CXT C16 C3 doub Y N 20 A1CXT C1 N1 sing N N 21 A1CXT C4 C3 sing N N 22 A1CXT C4 N7 sing Y N 23 A1CXT C14 N6 doub Y N 24 A1CXT N1 N2 sing Y N 25 A1CXT C3 C2 sing Y N 26 A1CXT C15 N7 sing Y N 27 A1CXT C15 N6 sing Y N 28 A1CXT N2 C2 doub Y N 29 A1CXT C9 H7 sing N N 30 A1CXT C9 H8 sing N N 31 A1CXT C12 H13 sing N N 32 A1CXT C12 H11 sing N N 33 A1CXT C12 H12 sing N N 34 A1CXT C14 H17 sing N N 35 A1CXT C1 H1 sing N N 36 A1CXT C1 H2 sing N N 37 A1CXT C1 H3 sing N N 38 A1CXT C10 H10 sing N N 39 A1CXT C10 H9 sing N N 40 A1CXT C13 H15 sing N N 41 A1CXT C13 H16 sing N N 42 A1CXT C13 H14 sing N N 43 A1CXT C2 H4 sing N N 44 A1CXT C5 H5 sing N N 45 A1CXT N3 H6 sing N N 46 A1CXT N7 H18 sing N N 47 ALA N CA sing N N 48 ALA N H sing N N 49 ALA N H2 sing N N 50 ALA CA C sing N N 51 ALA CA CB sing N N 52 ALA CA HA sing N N 53 ALA C O doub N N 54 ALA C OXT sing N N 55 ALA CB HB1 sing N N 56 ALA CB HB2 sing N N 57 ALA CB HB3 sing N N 58 ALA OXT HXT sing N N 59 ARG N CA sing N N 60 ARG N H sing N N 61 ARG N H2 sing N N 62 ARG CA C sing N N 63 ARG CA CB sing N N 64 ARG CA HA sing N N 65 ARG C O doub N N 66 ARG C OXT sing N N 67 ARG CB CG sing N N 68 ARG CB HB2 sing N N 69 ARG CB HB3 sing N N 70 ARG CG CD sing N N 71 ARG CG HG2 sing N N 72 ARG CG HG3 sing N N 73 ARG CD NE sing N N 74 ARG CD HD2 sing N N 75 ARG CD HD3 sing N N 76 ARG NE CZ sing N N 77 ARG NE HE sing N N 78 ARG CZ NH1 sing N N 79 ARG CZ NH2 doub N N 80 ARG NH1 HH11 sing N N 81 ARG NH1 HH12 sing N N 82 ARG NH2 HH21 sing N N 83 ARG NH2 HH22 sing N N 84 ARG OXT HXT sing N N 85 ASN N CA sing N N 86 ASN N H sing N N 87 ASN N H2 sing N N 88 ASN CA C sing N N 89 ASN CA CB sing N N 90 ASN CA HA sing N N 91 ASN C O doub N N 92 ASN C OXT sing N N 93 ASN CB CG sing N N 94 ASN CB HB2 sing N N 95 ASN CB HB3 sing N N 96 ASN CG OD1 doub N N 97 ASN CG ND2 sing N N 98 ASN ND2 HD21 sing N N 99 ASN ND2 HD22 sing N N 100 ASN OXT HXT sing N N 101 ASP N CA sing N N 102 ASP N H sing N N 103 ASP N H2 sing N N 104 ASP CA C sing N N 105 ASP CA CB sing N N 106 ASP CA HA sing N N 107 ASP C O doub N N 108 ASP C OXT sing N N 109 ASP CB CG sing N N 110 ASP CB HB2 sing N N 111 ASP CB HB3 sing N N 112 ASP CG OD1 doub N N 113 ASP CG OD2 sing N N 114 ASP OD2 HD2 sing N N 115 ASP OXT HXT sing N N 116 CYS N CA sing N N 117 CYS N H sing N N 118 CYS N H2 sing N N 119 CYS CA C sing N N 120 CYS CA CB sing N N 121 CYS CA HA sing N N 122 CYS C O doub N N 123 CYS C OXT sing N N 124 CYS CB SG sing N N 125 CYS CB HB2 sing N N 126 CYS CB HB3 sing N N 127 CYS SG HG sing N N 128 CYS OXT HXT sing N N 129 GLN N CA sing N N 130 GLN N H sing N N 131 GLN N H2 sing N N 132 GLN CA C sing N N 133 GLN CA CB sing N N 134 GLN CA HA sing N N 135 GLN C O doub N N 136 GLN C OXT sing N N 137 GLN CB CG sing N N 138 GLN CB HB2 sing N N 139 GLN CB HB3 sing N N 140 GLN CG CD sing N N 141 GLN CG HG2 sing N N 142 GLN CG HG3 sing N N 143 GLN CD OE1 doub N N 144 GLN CD NE2 sing N N 145 GLN NE2 HE21 sing N N 146 GLN NE2 HE22 sing N N 147 GLN OXT HXT sing N N 148 GLU N CA sing N N 149 GLU N H sing N N 150 GLU N H2 sing N N 151 GLU CA C sing N N 152 GLU CA CB sing N N 153 GLU CA HA sing N N 154 GLU C O doub N N 155 GLU C OXT sing N N 156 GLU CB CG sing N N 157 GLU CB HB2 sing N N 158 GLU CB HB3 sing N N 159 GLU CG CD sing N N 160 GLU CG HG2 sing N N 161 GLU CG HG3 sing N N 162 GLU CD OE1 doub N N 163 GLU CD OE2 sing N N 164 GLU OE2 HE2 sing N N 165 GLU OXT HXT sing N N 166 GLY N CA sing N N 167 GLY N H sing N N 168 GLY N H2 sing N N 169 GLY CA C sing N N 170 GLY CA HA2 sing N N 171 GLY CA HA3 sing N N 172 GLY C O doub N N 173 GLY C OXT sing N N 174 GLY OXT HXT sing N N 175 HIS N CA sing N N 176 HIS N H sing N N 177 HIS N H2 sing N N 178 HIS CA C sing N N 179 HIS CA CB sing N N 180 HIS CA HA sing N N 181 HIS C O doub N N 182 HIS C OXT sing N N 183 HIS CB CG sing N N 184 HIS CB HB2 sing N N 185 HIS CB HB3 sing N N 186 HIS CG ND1 sing Y N 187 HIS CG CD2 doub Y N 188 HIS ND1 CE1 doub Y N 189 HIS ND1 HD1 sing N N 190 HIS CD2 NE2 sing Y N 191 HIS CD2 HD2 sing N N 192 HIS CE1 NE2 sing Y N 193 HIS CE1 HE1 sing N N 194 HIS NE2 HE2 sing N N 195 HIS OXT HXT sing N N 196 HOH O H1 sing N N 197 HOH O H2 sing N N 198 ILE N CA sing N N 199 ILE N H sing N N 200 ILE N H2 sing N N 201 ILE CA C sing N N 202 ILE CA CB sing N N 203 ILE CA HA sing N N 204 ILE C O doub N N 205 ILE C OXT sing N N 206 ILE CB CG1 sing N N 207 ILE CB CG2 sing N N 208 ILE CB HB sing N N 209 ILE CG1 CD1 sing N N 210 ILE CG1 HG12 sing N N 211 ILE CG1 HG13 sing N N 212 ILE CG2 HG21 sing N N 213 ILE CG2 HG22 sing N N 214 ILE CG2 HG23 sing N N 215 ILE CD1 HD11 sing N N 216 ILE CD1 HD12 sing N N 217 ILE CD1 HD13 sing N N 218 ILE OXT HXT sing N N 219 LEU N CA sing N N 220 LEU N H sing N N 221 LEU N H2 sing N N 222 LEU CA C sing N N 223 LEU CA CB sing N N 224 LEU CA HA sing N N 225 LEU C O doub N N 226 LEU C OXT sing N N 227 LEU CB CG sing N N 228 LEU CB HB2 sing N N 229 LEU CB HB3 sing N N 230 LEU CG CD1 sing N N 231 LEU CG CD2 sing N N 232 LEU CG HG sing N N 233 LEU CD1 HD11 sing N N 234 LEU CD1 HD12 sing N N 235 LEU CD1 HD13 sing N N 236 LEU CD2 HD21 sing N N 237 LEU CD2 HD22 sing N N 238 LEU CD2 HD23 sing N N 239 LEU OXT HXT sing N N 240 LYS N CA sing N N 241 LYS N H sing N N 242 LYS N H2 sing N N 243 LYS CA C sing N N 244 LYS CA CB sing N N 245 LYS CA HA sing N N 246 LYS C O doub N N 247 LYS C OXT sing N N 248 LYS CB CG sing N N 249 LYS CB HB2 sing N N 250 LYS CB HB3 sing N N 251 LYS CG CD sing N N 252 LYS CG HG2 sing N N 253 LYS CG HG3 sing N N 254 LYS CD CE sing N N 255 LYS CD HD2 sing N N 256 LYS CD HD3 sing N N 257 LYS CE NZ sing N N 258 LYS CE HE2 sing N N 259 LYS CE HE3 sing N N 260 LYS NZ HZ1 sing N N 261 LYS NZ HZ2 sing N N 262 LYS NZ HZ3 sing N N 263 LYS OXT HXT sing N N 264 MET N CA sing N N 265 MET N H sing N N 266 MET N H2 sing N N 267 MET CA C sing N N 268 MET CA CB sing N N 269 MET CA HA sing N N 270 MET C O doub N N 271 MET C OXT sing N N 272 MET CB CG sing N N 273 MET CB HB2 sing N N 274 MET CB HB3 sing N N 275 MET CG SD sing N N 276 MET CG HG2 sing N N 277 MET CG HG3 sing N N 278 MET SD CE sing N N 279 MET CE HE1 sing N N 280 MET CE HE2 sing N N 281 MET CE HE3 sing N N 282 MET OXT HXT sing N N 283 PHE N CA sing N N 284 PHE N H sing N N 285 PHE N H2 sing N N 286 PHE CA C sing N N 287 PHE CA CB sing N N 288 PHE CA HA sing N N 289 PHE C O doub N N 290 PHE C OXT sing N N 291 PHE CB CG sing N N 292 PHE CB HB2 sing N N 293 PHE CB HB3 sing N N 294 PHE CG CD1 doub Y N 295 PHE CG CD2 sing Y N 296 PHE CD1 CE1 sing Y N 297 PHE CD1 HD1 sing N N 298 PHE CD2 CE2 doub Y N 299 PHE CD2 HD2 sing N N 300 PHE CE1 CZ doub Y N 301 PHE CE1 HE1 sing N N 302 PHE CE2 CZ sing Y N 303 PHE CE2 HE2 sing N N 304 PHE CZ HZ sing N N 305 PHE OXT HXT sing N N 306 PRO N CA sing N N 307 PRO N CD sing N N 308 PRO N H sing N N 309 PRO CA C sing N N 310 PRO CA CB sing N N 311 PRO CA HA sing N N 312 PRO C O doub N N 313 PRO C OXT sing N N 314 PRO CB CG sing N N 315 PRO CB HB2 sing N N 316 PRO CB HB3 sing N N 317 PRO CG CD sing N N 318 PRO CG HG2 sing N N 319 PRO CG HG3 sing N N 320 PRO CD HD2 sing N N 321 PRO CD HD3 sing N N 322 PRO OXT HXT sing N N 323 SER N CA sing N N 324 SER N H sing N N 325 SER N H2 sing N N 326 SER CA C sing N N 327 SER CA CB sing N N 328 SER CA HA sing N N 329 SER C O doub N N 330 SER C OXT sing N N 331 SER CB OG sing N N 332 SER CB HB2 sing N N 333 SER CB HB3 sing N N 334 SER OG HG sing N N 335 SER OXT HXT sing N N 336 THR N CA sing N N 337 THR N H sing N N 338 THR N H2 sing N N 339 THR CA C sing N N 340 THR CA CB sing N N 341 THR CA HA sing N N 342 THR C O doub N N 343 THR C OXT sing N N 344 THR CB OG1 sing N N 345 THR CB CG2 sing N N 346 THR CB HB sing N N 347 THR OG1 HG1 sing N N 348 THR CG2 HG21 sing N N 349 THR CG2 HG22 sing N N 350 THR CG2 HG23 sing N N 351 THR OXT HXT sing N N 352 TYR N CA sing N N 353 TYR N H sing N N 354 TYR N H2 sing N N 355 TYR CA C sing N N 356 TYR CA CB sing N N 357 TYR CA HA sing N N 358 TYR C O doub N N 359 TYR C OXT sing N N 360 TYR CB CG sing N N 361 TYR CB HB2 sing N N 362 TYR CB HB3 sing N N 363 TYR CG CD1 doub Y N 364 TYR CG CD2 sing Y N 365 TYR CD1 CE1 sing Y N 366 TYR CD1 HD1 sing N N 367 TYR CD2 CE2 doub Y N 368 TYR CD2 HD2 sing N N 369 TYR CE1 CZ doub Y N 370 TYR CE1 HE1 sing N N 371 TYR CE2 CZ sing Y N 372 TYR CE2 HE2 sing N N 373 TYR CZ OH sing N N 374 TYR OH HH sing N N 375 TYR OXT HXT sing N N 376 VAL N CA sing N N 377 VAL N H sing N N 378 VAL N H2 sing N N 379 VAL CA C sing N N 380 VAL CA CB sing N N 381 VAL CA HA sing N N 382 VAL C O doub N N 383 VAL C OXT sing N N 384 VAL CB CG1 sing N N 385 VAL CB CG2 sing N N 386 VAL CB HB sing N N 387 VAL CG1 HG11 sing N N 388 VAL CG1 HG12 sing N N 389 VAL CG1 HG13 sing N N 390 VAL CG2 HG21 sing N N 391 VAL CG2 HG22 sing N N 392 VAL CG2 HG23 sing N N 393 VAL OXT HXT sing N N 394 # _pdbx_audit_support.ordinal 1 _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.grant_number U19AI171110 _pdbx_audit_support.country 'United States' # _pdbx_deposit_group.group_title 'PanDDA analysis group deposition of SARS-CoV-2 NSP3 macrodomain ligand screen - analogues leading to AVI-6451' _pdbx_deposit_group.group_description 'SARS-CoV-2 NSP3 macrodomain in complex with ligands identified by X-ray diffraction using ALS 8.3.1, SSRL 9-2 and SSRL 12-2' _pdbx_deposit_group.group_type 'changed state' _pdbx_deposit_group.group_id G_1002356 # _atom_sites.entry_id 13RK _atom_sites.fract_transf_matrix[1][1] 0.011266 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011266 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025186 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O S # loop_ # loop_ #