data_146D
#
_entry.id 146D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.392
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 146D pdb_0000146d 10.2210/pdb146d/pdb
WWPDB D_1000170106 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1995-03-31
2 'Structure model' 1 1 2008-03-24
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 2 0 2020-07-29
5 'Structure model' 2 1 2022-01-19
6 'Structure model' 2 2 2024-05-22
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Atomic model'
4 4 'Structure model' 'Data collection'
5 4 'Structure model' 'Derived calculations'
6 4 'Structure model' Other
7 4 'Structure model' 'Structure summary'
8 5 'Structure model' 'Database references'
9 5 'Structure model' 'Structure summary'
10 6 'Structure model' 'Data collection'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' atom_site
2 4 'Structure model' chem_comp
3 4 'Structure model' entity
4 4 'Structure model' entity_name_com
5 4 'Structure model' entity_name_sys
6 4 'Structure model' pdbx_branch_scheme
7 4 'Structure model' pdbx_chem_comp_identifier
8 4 'Structure model' pdbx_database_status
9 4 'Structure model' pdbx_entity_branch
10 4 'Structure model' pdbx_entity_branch_descriptor
11 4 'Structure model' pdbx_entity_branch_link
12 4 'Structure model' pdbx_entity_branch_list
13 4 'Structure model' pdbx_entity_nonpoly
14 4 'Structure model' pdbx_nonpoly_scheme
15 4 'Structure model' pdbx_struct_assembly
16 4 'Structure model' pdbx_struct_conn_angle
17 4 'Structure model' pdbx_struct_oper_list
18 4 'Structure model' struct_asym
19 4 'Structure model' struct_conn
20 4 'Structure model' struct_site
21 4 'Structure model' struct_site_gen
22 5 'Structure model' chem_comp
23 5 'Structure model' database_2
24 5 'Structure model' entity_name_com
25 6 'Structure model' chem_comp_atom
26 6 'Structure model' chem_comp_bond
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_atom_site.B_iso_or_equiv'
2 4 'Structure model' '_atom_site.Cartn_x'
3 4 'Structure model' '_atom_site.Cartn_y'
4 4 'Structure model' '_atom_site.Cartn_z'
5 4 'Structure model' '_atom_site.auth_asym_id'
6 4 'Structure model' '_atom_site.auth_atom_id'
7 4 'Structure model' '_atom_site.auth_comp_id'
8 4 'Structure model' '_atom_site.auth_seq_id'
9 4 'Structure model' '_atom_site.label_asym_id'
10 4 'Structure model' '_atom_site.label_atom_id'
11 4 'Structure model' '_atom_site.label_comp_id'
12 4 'Structure model' '_atom_site.label_entity_id'
13 4 'Structure model' '_atom_site.type_symbol'
14 4 'Structure model' '_chem_comp.name'
15 4 'Structure model' '_chem_comp.type'
16 4 'Structure model' '_entity_name_com.entity_id'
17 4 'Structure model' '_entity_name_sys.entity_id'
18 4 'Structure model' '_entity_name_sys.name'
19 4 'Structure model' '_pdbx_database_status.process_site'
20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'
21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'
25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
27 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
28 4 'Structure model' '_pdbx_struct_conn_angle.value'
29 4 'Structure model' '_struct_conn.conn_type_id'
30 4 'Structure model' '_struct_conn.id'
31 4 'Structure model' '_struct_conn.pdbx_dist_value'
32 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
33 4 'Structure model' '_struct_conn.pdbx_value_order'
34 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
35 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
36 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
37 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
38 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'
39 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
40 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
41 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
42 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
43 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
44 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'
45 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'
46 5 'Structure model' '_chem_comp.pdbx_synonyms'
47 5 'Structure model' '_database_2.pdbx_DOI'
48 5 'Structure model' '_database_2.pdbx_database_accession'
49 5 'Structure model' '_entity_name_com.entity_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 146D
_pdbx_database_status.recvd_initial_deposition_date 1993-11-09
_pdbx_database_status.deposit_site ?
_pdbx_database_status.process_site BNL
_pdbx_database_status.SG_entry .
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Sastry, M.' 1
'Patel, D.J.' 2
#
_citation.id primary
_citation.title 'Solution structure of the mithramycin dimer-DNA complex.'
_citation.journal_abbrev Biochemistry
_citation.journal_volume 32
_citation.page_first 6588
_citation.page_last 6604
_citation.year 1993
_citation.journal_id_ASTM BICHAW
_citation.country US
_citation.journal_id_ISSN 0006-2960
_citation.journal_id_CSD 0033
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 8329387
_citation.pdbx_database_id_DOI 10.1021/bi00077a012
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Sastry, M.' 1 ?
primary 'Patel, D.J.' 2 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*TP*CP*GP*CP*GP*A)-3')
;
1809.217 2 ? ? ? ?
2 branched man 'beta-D-Olivopyranose-(1-3)-beta-D-Olivopyranose' 278.299 2 ? ? ? ?
3 branched syn
'2,6-dideoxy-3-C-methyl-beta-D-ribo-hexopyranose-(1-3)-2,6-dideoxy-beta-D-galactopyranose-(1-3)-beta-D-Olivopyranose' 422.468 2 ?
? ? ?
4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ?
5 non-polymer syn '1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE' 388.411 2 ?
? ? ?
#
_entity_name_com.entity_id 4
_entity_name_com.name MAGNESIUM
#
loop_
_entity_name_sys.entity_id
_entity_name_sys.name
1
;DNA (5'-D(*TP*CP*GP*CP*GP*A)-3')
;
3 '2,6-DIDEOXY-3 C-METHYL-D-RIBOPYRANOSIDE'
5 '1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE'
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DG)(DC)(DG)(DA)'
_entity_poly.pdbx_seq_one_letter_code_can TCGCGA
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
4 'MAGNESIUM ION' MG
5 '1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE' CRH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DT n
1 2 DC n
1 3 DG n
1 4 DC n
1 5 DG n
1 6 DA n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'CHEMICALLY SYNTHESIZED'
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide
3 oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 DOlib1-3DOlib1-ROH 'Glycam Condensed Sequence' GMML
1.0
2 2 'WURCS=2.0/1,2,1/[ad122m-1b_1-5]/1-1/a3-b1' WURCS PDB2Glycan
1.1.0
3 2 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{}}' LINUCS PDB-CARE ?
4 3 'WURCS=2.0/3,3,2/[ad122m-1b_1-5][ad112m-1b_1-5][ad622m-1b_1-5_3*C]/1-2-3/a3-b1_b3-c1' WURCS PDB2Glycan
1.1.0
5 3 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2-deoxy-Fucp]{[(3+1)][b-D-2,6-deoxy-Allp]{}}}' LINUCS PDB-CARE ?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 2 2 DDA C1 O1 1 DDA O3 HO3 sing ?
2 3 2 DDL C1 O1 1 DDA O3 HO3 sing ?
3 3 3 MDA C1 O1 2 DDL O3 HO3 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
CRH non-polymer .
'1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE' ? 'C21 H24 O7' 388.411
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DDA 'D-saccharide, beta linking' . beta-D-Olivopyranose
;beta-D-Olivose; 2,6-dideoxy-beta-D-arabino-hexopyranose; 2,6-dideoxy-beta-D-glucopyranose; 2,6-dideoxy-beta-D-mannopyranose; 2-deoxy-beta-D-quinovopyranose; 2-deoxy-beta-D-rhamnoopyranose; D-Olivose; Olivose; 2,6-DIDEOXY-BETA-D-GLUCOSE; 2,6-DIDEOXY-BETA-D-MANNOSE
;
'C6 H12 O4' 148.157
DDL 'D-saccharide, beta linking' . 2,6-dideoxy-beta-D-galactopyranose
;2,6-DIDEOXY-BETA-D-GALACTOSE; 2,6-DIDEOXY-BETA-D-TALOSE; 2,6-dideoxy-beta-D-lyxo-hexopyranose; 2-deoxy-beta-D-fucopyranose; 2,6-dideoxy-D-galactose; 2,6-dideoxy-galactose
;
'C6 H12 O4' 148.157
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
MDA 'D-saccharide, beta linking' . 2,6-dideoxy-3-C-methyl-beta-D-ribo-hexopyranose
;2,6-DIDEOXY-3 C-METHYL-D-RIBOPYRANOSIDE; 2,6-dideoxy-3-C-methyl-beta-D-ribo-hexose; 2,6-dideoxy-3-C-methyl-D-ribo-hexose; 2,6-dideoxy-3-C-methyl-ribo-hexose
;
'C7 H14 O4' 162.184
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DDA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DOlib
DDA 'COMMON NAME' GMML 1.0 b-D-Olivopyranose
DDA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2,6-deoxy-Glcp
DDA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Oli
DDL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2-deoxy-Fucp
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DT 1 1 1 DT T A . n
A 1 2 DC 2 2 2 DC C A . n
A 1 3 DG 3 3 3 DG G A . n
A 1 4 DC 4 4 4 DC C A . n
A 1 5 DG 5 5 5 DG G A . n
A 1 6 DA 6 6 6 DA A A . n
B 1 1 DT 1 7 7 DT T B . n
B 1 2 DC 2 8 8 DC C B . n
B 1 3 DG 3 9 9 DG G B . n
B 1 4 DC 4 10 10 DC C B . n
B 1 5 DG 5 11 11 DG G B . n
B 1 6 DA 6 12 12 DA A B . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
C 2 DDA 1 C DDA 1 ? DDA 8 n
C 2 DDA 2 C DDA 2 ? DDA 7 n
D 3 DDA 1 D DDA 1 ? DDA 10 n
D 3 DDL 2 D DDL 2 ? DDL 11 n
D 3 MDA 3 D MDA 3 ? MDA 12 n
E 2 DDA 1 E DDA 1 ? DDA 2 n
E 2 DDA 2 E DDA 2 ? DDA 1 n
F 3 DDA 1 F DDA 1 ? DDA 4 n
F 3 DDL 2 F DDL 2 ? DDL 5 n
F 3 MDA 3 F MDA 3 ? MDA 6 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 MG 1 13 13 MG MG A .
H 5 CRH 1 9 9 CRH CRH A .
I 5 CRH 1 3 3 CRH CRH B .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
X-PLOR 'model building' . ? 1
X-PLOR refinement . ? 2
X-PLOR phasing . ? 3
#
_cell.entry_id 146D
_cell.length_a 1.000
_cell.length_b 1.000
_cell.length_c 1.000
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 1
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 146D
_symmetry.space_group_name_H-M 'P 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 1
#
_exptl.entry_id 146D
_exptl.method 'SOLUTION NMR'
_exptl.crystals_number ?
#
_database_PDB_matrix.entry_id 146D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 146D
_struct.title 'SOLUTION STRUCTURE OF THE MITHRAMYCIN DIMER-DNA COMPLEX'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 146D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'DNA, MITHRAMYCIN DIMER'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 3 ?
E N N 2 ?
F N N 3 ?
G N N 4 ?
H N N 5 ?
I N N 5 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 146D
_struct_ref.pdbx_db_accession 146D
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 146D A 1 ? 6 ? 146D 1 ? 6 ? 1 6
2 1 146D B 1 ? 6 ? 146D 7 ? 12 ? 7 12
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale one ? H CRH . C6 ? ? ? 1_555 C DDA . O1 ? ? A CRH 9 C DDA 1 1_555 ? ? ? ? ? ? ? 1.393 ? ?
covale2 covale one ? H CRH . C2 ? ? ? 1_555 D DDA . O1 ? ? A CRH 9 D DDA 1 1_555 ? ? ? ? ? ? ? 1.429 ? ?
covale3 covale one ? I CRH . C6 ? ? ? 1_555 E DDA . O1 ? ? B CRH 3 E DDA 1 1_555 ? ? ? ? ? ? ? 1.392 ? ?
covale4 covale one ? I CRH . C2 ? ? ? 1_555 F DDA . O1 ? ? B CRH 3 F DDA 1 1_555 ? ? ? ? ? ? ? 1.428 ? ?
covale5 covale both ? C DDA . O3 ? ? ? 1_555 C DDA . C1 ? ? C DDA 1 C DDA 2 1_555 ? ? ? ? ? ? ? 1.430 sing ?
covale6 covale both ? D DDA . O3 ? ? ? 1_555 D DDL . C1 ? ? D DDA 1 D DDL 2 1_555 ? ? ? ? ? ? ? 1.432 sing ?
covale7 covale both ? D DDL . O3 ? ? ? 1_555 D MDA . C1 ? ? D DDL 2 D MDA 3 1_555 ? ? ? ? ? ? ? 1.437 sing ?
covale8 covale both ? E DDA . O3 ? ? ? 1_555 E DDA . C1 ? ? E DDA 1 E DDA 2 1_555 ? ? ? ? ? ? ? 1.431 sing ?
covale9 covale both ? F DDA . O3 ? ? ? 1_555 F DDL . C1 ? ? F DDA 1 F DDL 2 1_555 ? ? ? ? ? ? ? 1.431 sing ?
covale10 covale both ? F DDL . O3 ? ? ? 1_555 F MDA . C1 ? ? F DDL 2 F MDA 3 1_555 ? ? ? ? ? ? ? 1.436 sing ?
metalc1 metalc ? ? H CRH . O9 ? ? ? 1_555 G MG . MG ? ? A CRH 9 A MG 13 1_555 ? ? ? ? ? ? ? 2.134 ? ?
metalc2 metalc ? ? H CRH . O1 ? ? ? 1_555 G MG . MG ? ? A CRH 9 A MG 13 1_555 ? ? ? ? ? ? ? 2.377 ? ?
metalc3 metalc ? ? G MG . MG ? ? ? 1_555 I CRH . O9 ? ? A MG 13 B CRH 3 1_555 ? ? ? ? ? ? ? 2.132 ? ?
metalc4 metalc ? ? G MG . MG ? ? ? 1_555 I CRH . O1 ? ? A MG 13 B CRH 3 1_555 ? ? ? ? ? ? ? 2.378 ? ?
hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 1 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 1 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 3 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 3 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 3 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 4 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 4 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 4 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O9 ? H CRH . ? A CRH 9 ? 1_555 MG ? G MG . ? A MG 13 ? 1_555 O1 ? H CRH . ? A CRH 9 ? 1_555 70.2 ?
2 O9 ? H CRH . ? A CRH 9 ? 1_555 MG ? G MG . ? A MG 13 ? 1_555 O9 ? I CRH . ? B CRH 3 ? 1_555 179.8 ?
3 O1 ? H CRH . ? A CRH 9 ? 1_555 MG ? G MG . ? A MG 13 ? 1_555 O9 ? I CRH . ? B CRH 3 ? 1_555 109.8 ?
4 O9 ? H CRH . ? A CRH 9 ? 1_555 MG ? G MG . ? A MG 13 ? 1_555 O1 ? I CRH . ? B CRH 3 ? 1_555 110.0 ?
5 O1 ? H CRH . ? A CRH 9 ? 1_555 MG ? G MG . ? A MG 13 ? 1_555 O1 ? I CRH . ? B CRH 3 ? 1_555 80.4 ?
6 O9 ? I CRH . ? B CRH 3 ? 1_555 MG ? G MG . ? A MG 13 ? 1_555 O1 ? I CRH . ? B CRH 3 ? 1_555 70.3 ?
#
_pdbx_validate_rmsd_bond.id 1
_pdbx_validate_rmsd_bond.PDB_model_num 1
_pdbx_validate_rmsd_bond.auth_atom_id_1 C5
_pdbx_validate_rmsd_bond.auth_asym_id_1 A
_pdbx_validate_rmsd_bond.auth_comp_id_1 DT
_pdbx_validate_rmsd_bond.auth_seq_id_1 1
_pdbx_validate_rmsd_bond.PDB_ins_code_1 ?
_pdbx_validate_rmsd_bond.label_alt_id_1 ?
_pdbx_validate_rmsd_bond.auth_atom_id_2 C7
_pdbx_validate_rmsd_bond.auth_asym_id_2 A
_pdbx_validate_rmsd_bond.auth_comp_id_2 DT
_pdbx_validate_rmsd_bond.auth_seq_id_2 1
_pdbx_validate_rmsd_bond.PDB_ins_code_2 ?
_pdbx_validate_rmsd_bond.label_alt_id_2 ?
_pdbx_validate_rmsd_bond.bond_value 1.533
_pdbx_validate_rmsd_bond.bond_target_value 1.496
_pdbx_validate_rmsd_bond.bond_deviation 0.037
_pdbx_validate_rmsd_bond.bond_standard_deviation 0.006
_pdbx_validate_rmsd_bond.linker_flag N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 114.63 108.30 6.33 0.30 N
2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 115.81 108.30 7.51 0.30 N
3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.39 108.30 2.09 0.30 N
4 1 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 116.40 113.10 3.30 0.50 N
5 1 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.88 106.40 -2.52 0.40 N
6 1 "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? "C2'" A DC 4 ? ? 96.93 102.20 -5.27 0.70 N
7 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 114.12 108.30 5.82 0.30 N
8 1 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 116.23 113.10 3.13 0.50 N
9 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.12 108.30 3.82 0.30 N
10 1 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 114.56 108.30 6.26 0.30 N
11 1 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 115.80 108.30 7.50 0.30 N
12 1 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 110.42 108.30 2.12 0.30 N
13 1 N7 B DG 9 ? ? C8 B DG 9 ? ? N9 B DG 9 ? ? 116.38 113.10 3.28 0.50 N
14 1 C8 B DG 9 ? ? N9 B DG 9 ? ? C4 B DG 9 ? ? 103.90 106.40 -2.50 0.40 N
15 1 "C4'" B DC 10 ? ? "C3'" B DC 10 ? ? "C2'" B DC 10 ? ? 96.95 102.20 -5.25 0.70 N
16 1 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 114.13 108.30 5.83 0.30 N
17 1 N7 B DG 11 ? ? C8 B DG 11 ? ? N9 B DG 11 ? ? 116.20 113.10 3.10 0.50 N
18 1 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? N9 B DA 12 ? ? 112.08 108.30 3.78 0.30 N
19 2 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.48 122.90 -4.42 0.60 N
20 2 "C3'" A DT 1 ? ? "O3'" A DT 1 ? ? P A DC 2 ? ? 128.87 119.70 9.17 1.20 Y
21 2 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 116.75 108.30 8.45 0.30 N
22 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.24 108.30 2.94 0.30 N
23 2 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 116.27 113.10 3.17 0.50 N
24 2 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.76 106.40 -2.64 0.40 N
25 2 "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? "C2'" A DC 4 ? ? 96.47 102.20 -5.73 0.70 N
26 2 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 114.84 108.30 6.54 0.30 N
27 2 N7 A DG 5 ? ? C8 A DG 5 ? ? N9 A DG 5 ? ? 116.21 113.10 3.11 0.50 N
28 2 "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? "O4'" A DA 6 ? ? 119.43 109.80 9.63 1.10 N
29 2 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 113.40 108.30 5.10 0.30 N
30 2 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 118.58 122.90 -4.32 0.60 N
31 2 "C3'" B DT 7 ? ? "O3'" B DT 7 ? ? P B DC 8 ? ? 128.80 119.70 9.10 1.20 Y
32 2 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 116.81 108.30 8.51 0.30 N
33 2 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.26 108.30 2.96 0.30 N
34 2 N7 B DG 9 ? ? C8 B DG 9 ? ? N9 B DG 9 ? ? 116.36 113.10 3.26 0.50 N
35 2 C8 B DG 9 ? ? N9 B DG 9 ? ? C4 B DG 9 ? ? 103.76 106.40 -2.64 0.40 N
36 2 "C4'" B DC 10 ? ? "C3'" B DC 10 ? ? "C2'" B DC 10 ? ? 96.56 102.20 -5.64 0.70 N
37 2 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 114.85 108.30 6.55 0.30 N
38 2 N7 B DG 11 ? ? C8 B DG 11 ? ? N9 B DG 11 ? ? 116.15 113.10 3.05 0.50 N
39 2 "C5'" B DA 12 ? ? "C4'" B DA 12 ? ? "O4'" B DA 12 ? ? 119.46 109.80 9.66 1.10 N
40 2 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? N9 B DA 12 ? ? 113.28 108.30 4.98 0.30 N
#
loop_
_pdbx_validate_planes.id
_pdbx_validate_planes.PDB_model_num
_pdbx_validate_planes.auth_comp_id
_pdbx_validate_planes.auth_asym_id
_pdbx_validate_planes.auth_seq_id
_pdbx_validate_planes.PDB_ins_code
_pdbx_validate_planes.label_alt_id
_pdbx_validate_planes.rmsd
_pdbx_validate_planes.type
1 1 DC A 4 ? ? 0.074 'SIDE CHAIN'
2 1 DA A 6 ? ? 0.058 'SIDE CHAIN'
3 1 DC B 10 ? ? 0.074 'SIDE CHAIN'
4 1 DA B 12 ? ? 0.058 'SIDE CHAIN'
#
_pdbx_nmr_ensemble.entry_id 146D
_pdbx_nmr_ensemble.conformers_calculated_total_number 2
_pdbx_nmr_ensemble.conformers_submitted_total_number 2
_pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted'
_pdbx_nmr_ensemble.average_constraints_per_residue ?
_pdbx_nmr_ensemble.average_constraint_violations_per_residue ?
_pdbx_nmr_ensemble.maximum_distance_constraint_violation ?
_pdbx_nmr_ensemble.average_distance_constraint_violation ?
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ?
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ?
_pdbx_nmr_ensemble.distance_constraint_violation_method ?
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ?
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ?
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ?
#
_pdbx_nmr_details.entry_id 146D
_pdbx_nmr_details.text
;THE HYDROXYL PROTONS IN THE RELAXATION MATRIX REFINED STRUCTURES ARE NOT WELL DETERMINED. THE HYDROPHILIC SIDE CHAIN, THE B SUGAR RESIDUE DDA 1 AND DDA 7, AND RESIDUES T 1 AND C 2 ARE UNDETERMINED.
;
#
_pdbx_nmr_refine.entry_id 146D
_pdbx_nmr_refine.method 'MOLECULAR DYNAMICS, MATRIX RELAXATION'
_pdbx_nmr_refine.details
;TWO STARTING MODELS WERE OBTAINED BY DOCKING THE MG2+ COORDINATED MITHRAMYCIN DIMER IN THE MINOR GROOVE OF A AND B FORM D(TCGCGA) DUPLEX. THESE MODELS WERE SUBSEQUENTLY REFINED BY DISTANCE RESTRAINED MOLECULAR DYNAMICS USING A SET OF INTER-PROTON DISTANCE RESTRAINTS DERIVED FROM THE NMR DATA. THE TWO DISTANCE-REFINED STRUCTURES WERE REFINED FURTHER USING RELAXATION-MATRIX BASED NOE INTENSITY-RESTRAINED MOLECULAR DYNAMICS. THE FINAL TWO STRUCTURES WERE OBTAINED BY TAKING THE AVERAGE COORDINATES OF THE LAST 1 PS OF THE DYNAMICS DURING RELAXATION MATRIX REFINEMENT AND MINIMIZED. THE R VALUE WAS USED TO REFINE THE STRUCTURE DURING RELAXATION MATRIX REFINEMENT. THE R FACTOR AND THE RMS DEVIATIONS FROM IDEAL GEOMETRY FOR THE TWO FINAL STRUCTURES ARE: MODEL 1 MODEL 2 R FACTOR 0.146 0.136 BOND (ANGSTROMS) 0.016 0.013 ANGLES (DEGREES) 3.410 3.369. THE STRUCTURE EXHIBITS APPROXIMATE TWO-FOLD SYMMETRY, PERPENDICULAR TO THE HELICAL AXIS AND PASSING THROUGH THE MAGNESIUM IN THE COMPLEX. THE TRANSFORMATION PRESENTED ON *MTRIX 1* RECORDS BELOW WILL YIELD APPROXIMATE COORDINATES FOR CHAIN B OF MODEL 1 WHEN APPLIED TO CHAIN A OF MODEL 1. THE TRANSFORMATION PRESENTED ON *MTRIX 2* RECORDS BELOW WILL YIELD APPROXIMATE COORDINATES FOR CHAIN B OF MODEL 2 WHEN APPLIED TO CHAIN A OF MODEL 2.
;
_pdbx_nmr_refine.software_ordinal 1
#
_pdbx_nmr_software.name X-PLOR
_pdbx_nmr_software.version 2.1
_pdbx_nmr_software.classification refinement
_pdbx_nmr_software.authors Brunger
_pdbx_nmr_software.ordinal 1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
CRH C1 C N N 1
CRH C2 C N N 2
CRH C3 C N R 3
CRH C4 C N N 4
CRH C5 C Y N 5
CRH C6 C Y N 6
CRH C7 C Y N 7
CRH C8 C Y N 8
CRH C9 C Y N 9
CRH C10 C Y N 10
CRH C11 C Y N 11
CRH C12 C Y N 12
CRH C13 C Y N 13
CRH C14 C Y N 14
CRH C15 C N N 15
CRH O1 O N N 16
CRH O8 O N N 17
CRH O9 O N N 18
CRH "C1'" C N S 19
CRH "C2'" C N N 20
CRH "C3'" C N S 21
CRH "C4'" C N R 22
CRH C1M C N N 23
CRH C4M C N N 24
CRH "O1'" O N N 25
CRH "O2'" O N N 26
CRH "O3'" O N N 27
CRH "O4'" O N N 28
CRH H21 H N N 29
CRH H22 H N N 30
CRH H3 H N N 31
CRH H41 H N N 32
CRH H42 H N N 33
CRH H5 H N N 34
CRH H6 H N N 35
CRH H10 H N N 36
CRH H151 H N N 37
CRH H152 H N N 38
CRH H153 H N N 39
CRH HO8 H N N 40
CRH HO9 H N N 41
CRH "H1'" H N N 42
CRH "H3'" H N N 43
CRH "H4'" H N N 44
CRH "H1'1" H N N 45
CRH "H1'2" H N N 46
CRH "H1'3" H N N 47
CRH "H4'1" H N N 48
CRH "H4'2" H N N 49
CRH "H4'3" H N N 50
CRH HO3 H N N 51
CRH HO4 H N N 52
DA OP3 O N N 53
DA P P N N 54
DA OP1 O N N 55
DA OP2 O N N 56
DA "O5'" O N N 57
DA "C5'" C N N 58
DA "C4'" C N R 59
DA "O4'" O N N 60
DA "C3'" C N S 61
DA "O3'" O N N 62
DA "C2'" C N N 63
DA "C1'" C N R 64
DA N9 N Y N 65
DA C8 C Y N 66
DA N7 N Y N 67
DA C5 C Y N 68
DA C6 C Y N 69
DA N6 N N N 70
DA N1 N Y N 71
DA C2 C Y N 72
DA N3 N Y N 73
DA C4 C Y N 74
DA HOP3 H N N 75
DA HOP2 H N N 76
DA "H5'" H N N 77
DA "H5''" H N N 78
DA "H4'" H N N 79
DA "H3'" H N N 80
DA "HO3'" H N N 81
DA "H2'" H N N 82
DA "H2''" H N N 83
DA "H1'" H N N 84
DA H8 H N N 85
DA H61 H N N 86
DA H62 H N N 87
DA H2 H N N 88
DC OP3 O N N 89
DC P P N N 90
DC OP1 O N N 91
DC OP2 O N N 92
DC "O5'" O N N 93
DC "C5'" C N N 94
DC "C4'" C N R 95
DC "O4'" O N N 96
DC "C3'" C N S 97
DC "O3'" O N N 98
DC "C2'" C N N 99
DC "C1'" C N R 100
DC N1 N N N 101
DC C2 C N N 102
DC O2 O N N 103
DC N3 N N N 104
DC C4 C N N 105
DC N4 N N N 106
DC C5 C N N 107
DC C6 C N N 108
DC HOP3 H N N 109
DC HOP2 H N N 110
DC "H5'" H N N 111
DC "H5''" H N N 112
DC "H4'" H N N 113
DC "H3'" H N N 114
DC "HO3'" H N N 115
DC "H2'" H N N 116
DC "H2''" H N N 117
DC "H1'" H N N 118
DC H41 H N N 119
DC H42 H N N 120
DC H5 H N N 121
DC H6 H N N 122
DDA C1 C N R 123
DDA C2 C N N 124
DDA C3 C N R 125
DDA C4 C N S 126
DDA C5 C N R 127
DDA C6 C N N 128
DDA O5 O N N 129
DDA O1 O N N 130
DDA O3 O N N 131
DDA O4 O N N 132
DDA H1 H N N 133
DDA H21 H N N 134
DDA H22 H N N 135
DDA H3 H N N 136
DDA H4 H N N 137
DDA H5 H N N 138
DDA H61 H N N 139
DDA H62 H N N 140
DDA H63 H N N 141
DDA HO1 H N N 142
DDA HO3 H N N 143
DDA HO4 H N N 144
DDL C1 C N R 145
DDL C2 C N N 146
DDL C3 C N R 147
DDL C4 C N R 148
DDL C5 C N R 149
DDL C6 C N N 150
DDL O1 O N N 151
DDL O5 O N N 152
DDL O3 O N N 153
DDL O4 O N N 154
DDL H1 H N N 155
DDL H2 H N N 156
DDL H22 H N N 157
DDL H3 H N N 158
DDL H4 H N N 159
DDL H5 H N N 160
DDL H61 H N N 161
DDL H62 H N N 162
DDL H63 H N N 163
DDL HO1 H N N 164
DDL HO3 H N N 165
DDL HO4 H N N 166
DG OP3 O N N 167
DG P P N N 168
DG OP1 O N N 169
DG OP2 O N N 170
DG "O5'" O N N 171
DG "C5'" C N N 172
DG "C4'" C N R 173
DG "O4'" O N N 174
DG "C3'" C N S 175
DG "O3'" O N N 176
DG "C2'" C N N 177
DG "C1'" C N R 178
DG N9 N Y N 179
DG C8 C Y N 180
DG N7 N Y N 181
DG C5 C Y N 182
DG C6 C N N 183
DG O6 O N N 184
DG N1 N N N 185
DG C2 C N N 186
DG N2 N N N 187
DG N3 N N N 188
DG C4 C Y N 189
DG HOP3 H N N 190
DG HOP2 H N N 191
DG "H5'" H N N 192
DG "H5''" H N N 193
DG "H4'" H N N 194
DG "H3'" H N N 195
DG "HO3'" H N N 196
DG "H2'" H N N 197
DG "H2''" H N N 198
DG "H1'" H N N 199
DG H8 H N N 200
DG H1 H N N 201
DG H21 H N N 202
DG H22 H N N 203
DT OP3 O N N 204
DT P P N N 205
DT OP1 O N N 206
DT OP2 O N N 207
DT "O5'" O N N 208
DT "C5'" C N N 209
DT "C4'" C N R 210
DT "O4'" O N N 211
DT "C3'" C N S 212
DT "O3'" O N N 213
DT "C2'" C N N 214
DT "C1'" C N R 215
DT N1 N N N 216
DT C2 C N N 217
DT O2 O N N 218
DT N3 N N N 219
DT C4 C N N 220
DT O4 O N N 221
DT C5 C N N 222
DT C7 C N N 223
DT C6 C N N 224
DT HOP3 H N N 225
DT HOP2 H N N 226
DT "H5'" H N N 227
DT "H5''" H N N 228
DT "H4'" H N N 229
DT "H3'" H N N 230
DT "HO3'" H N N 231
DT "H2'" H N N 232
DT "H2''" H N N 233
DT "H1'" H N N 234
DT H3 H N N 235
DT H71 H N N 236
DT H72 H N N 237
DT H73 H N N 238
DT H6 H N N 239
MDA C1 C N R 240
MDA C2 C N N 241
MDA C3 C N S 242
MDA C4 C N R 243
MDA C5 C N R 244
MDA C6 C N N 245
MDA "C3'" C N N 246
MDA O1 O N N 247
MDA O5 O N N 248
MDA O3 O N N 249
MDA O4 O N N 250
MDA H1 H N N 251
MDA H2 H N N 252
MDA H22 H N N 253
MDA H4 H N N 254
MDA H5 H N N 255
MDA H61 H N N 256
MDA H62 H N N 257
MDA H63 H N N 258
MDA "H3'1" H N N 259
MDA "H3'2" H N N 260
MDA "H3'3" H N N 261
MDA HO1 H N N 262
MDA HO3 H N N 263
MDA HO4 H N N 264
MG MG MG N N 265
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CRH C1 C2 sing N N 1
CRH C1 C13 sing N N 2
CRH C1 O1 doub N N 3
CRH C2 C3 sing N N 4
CRH C2 H21 sing N N 5
CRH C2 H22 sing N N 6
CRH C3 C4 sing N N 7
CRH C3 "C1'" sing N N 8
CRH C3 H3 sing N N 9
CRH C4 C14 sing N N 10
CRH C4 H41 sing N N 11
CRH C4 H42 sing N N 12
CRH C5 C6 doub Y N 13
CRH C5 C11 sing Y N 14
CRH C5 H5 sing N N 15
CRH C6 C7 sing Y N 16
CRH C6 H6 sing N N 17
CRH C7 C8 doub Y N 18
CRH C7 C15 sing N N 19
CRH C8 C12 sing Y N 20
CRH C8 O8 sing N N 21
CRH C9 C12 doub Y N 22
CRH C9 C13 sing Y N 23
CRH C9 O9 sing N N 24
CRH C10 C11 doub Y N 25
CRH C10 C14 sing Y N 26
CRH C10 H10 sing N N 27
CRH C11 C12 sing Y N 28
CRH C13 C14 doub Y N 29
CRH C15 H151 sing N N 30
CRH C15 H152 sing N N 31
CRH C15 H153 sing N N 32
CRH O8 HO8 sing N N 33
CRH O9 HO9 sing N N 34
CRH "C1'" "C2'" sing N N 35
CRH "C1'" "O1'" sing N N 36
CRH "C1'" "H1'" sing N N 37
CRH "C2'" "C3'" sing N N 38
CRH "C2'" "O2'" doub N N 39
CRH "C3'" "C4'" sing N N 40
CRH "C3'" "O3'" sing N N 41
CRH "C3'" "H3'" sing N N 42
CRH "C4'" C4M sing N N 43
CRH "C4'" "O4'" sing N N 44
CRH "C4'" "H4'" sing N N 45
CRH C1M "O1'" sing N N 46
CRH C1M "H1'1" sing N N 47
CRH C1M "H1'2" sing N N 48
CRH C1M "H1'3" sing N N 49
CRH C4M "H4'1" sing N N 50
CRH C4M "H4'2" sing N N 51
CRH C4M "H4'3" sing N N 52
CRH "O3'" HO3 sing N N 53
CRH "O4'" HO4 sing N N 54
DA OP3 P sing N N 55
DA OP3 HOP3 sing N N 56
DA P OP1 doub N N 57
DA P OP2 sing N N 58
DA P "O5'" sing N N 59
DA OP2 HOP2 sing N N 60
DA "O5'" "C5'" sing N N 61
DA "C5'" "C4'" sing N N 62
DA "C5'" "H5'" sing N N 63
DA "C5'" "H5''" sing N N 64
DA "C4'" "O4'" sing N N 65
DA "C4'" "C3'" sing N N 66
DA "C4'" "H4'" sing N N 67
DA "O4'" "C1'" sing N N 68
DA "C3'" "O3'" sing N N 69
DA "C3'" "C2'" sing N N 70
DA "C3'" "H3'" sing N N 71
DA "O3'" "HO3'" sing N N 72
DA "C2'" "C1'" sing N N 73
DA "C2'" "H2'" sing N N 74
DA "C2'" "H2''" sing N N 75
DA "C1'" N9 sing N N 76
DA "C1'" "H1'" sing N N 77
DA N9 C8 sing Y N 78
DA N9 C4 sing Y N 79
DA C8 N7 doub Y N 80
DA C8 H8 sing N N 81
DA N7 C5 sing Y N 82
DA C5 C6 sing Y N 83
DA C5 C4 doub Y N 84
DA C6 N6 sing N N 85
DA C6 N1 doub Y N 86
DA N6 H61 sing N N 87
DA N6 H62 sing N N 88
DA N1 C2 sing Y N 89
DA C2 N3 doub Y N 90
DA C2 H2 sing N N 91
DA N3 C4 sing Y N 92
DC OP3 P sing N N 93
DC OP3 HOP3 sing N N 94
DC P OP1 doub N N 95
DC P OP2 sing N N 96
DC P "O5'" sing N N 97
DC OP2 HOP2 sing N N 98
DC "O5'" "C5'" sing N N 99
DC "C5'" "C4'" sing N N 100
DC "C5'" "H5'" sing N N 101
DC "C5'" "H5''" sing N N 102
DC "C4'" "O4'" sing N N 103
DC "C4'" "C3'" sing N N 104
DC "C4'" "H4'" sing N N 105
DC "O4'" "C1'" sing N N 106
DC "C3'" "O3'" sing N N 107
DC "C3'" "C2'" sing N N 108
DC "C3'" "H3'" sing N N 109
DC "O3'" "HO3'" sing N N 110
DC "C2'" "C1'" sing N N 111
DC "C2'" "H2'" sing N N 112
DC "C2'" "H2''" sing N N 113
DC "C1'" N1 sing N N 114
DC "C1'" "H1'" sing N N 115
DC N1 C2 sing N N 116
DC N1 C6 sing N N 117
DC C2 O2 doub N N 118
DC C2 N3 sing N N 119
DC N3 C4 doub N N 120
DC C4 N4 sing N N 121
DC C4 C5 sing N N 122
DC N4 H41 sing N N 123
DC N4 H42 sing N N 124
DC C5 C6 doub N N 125
DC C5 H5 sing N N 126
DC C6 H6 sing N N 127
DDA C1 C2 sing N N 128
DDA C1 O5 sing N N 129
DDA C1 O1 sing N N 130
DDA C1 H1 sing N N 131
DDA C2 C3 sing N N 132
DDA C2 H21 sing N N 133
DDA C2 H22 sing N N 134
DDA C3 C4 sing N N 135
DDA C3 O3 sing N N 136
DDA C3 H3 sing N N 137
DDA C4 C5 sing N N 138
DDA C4 O4 sing N N 139
DDA C4 H4 sing N N 140
DDA C5 C6 sing N N 141
DDA C5 O5 sing N N 142
DDA C5 H5 sing N N 143
DDA C6 H61 sing N N 144
DDA C6 H62 sing N N 145
DDA C6 H63 sing N N 146
DDA O1 HO1 sing N N 147
DDA O3 HO3 sing N N 148
DDA O4 HO4 sing N N 149
DDL C1 C2 sing N N 150
DDL C1 O1 sing N N 151
DDL C1 O5 sing N N 152
DDL C1 H1 sing N N 153
DDL C2 C3 sing N N 154
DDL C2 H2 sing N N 155
DDL C2 H22 sing N N 156
DDL C3 C4 sing N N 157
DDL C3 O3 sing N N 158
DDL C3 H3 sing N N 159
DDL C4 C5 sing N N 160
DDL C4 O4 sing N N 161
DDL C4 H4 sing N N 162
DDL C5 C6 sing N N 163
DDL C5 O5 sing N N 164
DDL C5 H5 sing N N 165
DDL C6 H61 sing N N 166
DDL C6 H62 sing N N 167
DDL C6 H63 sing N N 168
DDL O1 HO1 sing N N 169
DDL O3 HO3 sing N N 170
DDL O4 HO4 sing N N 171
DG OP3 P sing N N 172
DG OP3 HOP3 sing N N 173
DG P OP1 doub N N 174
DG P OP2 sing N N 175
DG P "O5'" sing N N 176
DG OP2 HOP2 sing N N 177
DG "O5'" "C5'" sing N N 178
DG "C5'" "C4'" sing N N 179
DG "C5'" "H5'" sing N N 180
DG "C5'" "H5''" sing N N 181
DG "C4'" "O4'" sing N N 182
DG "C4'" "C3'" sing N N 183
DG "C4'" "H4'" sing N N 184
DG "O4'" "C1'" sing N N 185
DG "C3'" "O3'" sing N N 186
DG "C3'" "C2'" sing N N 187
DG "C3'" "H3'" sing N N 188
DG "O3'" "HO3'" sing N N 189
DG "C2'" "C1'" sing N N 190
DG "C2'" "H2'" sing N N 191
DG "C2'" "H2''" sing N N 192
DG "C1'" N9 sing N N 193
DG "C1'" "H1'" sing N N 194
DG N9 C8 sing Y N 195
DG N9 C4 sing Y N 196
DG C8 N7 doub Y N 197
DG C8 H8 sing N N 198
DG N7 C5 sing Y N 199
DG C5 C6 sing N N 200
DG C5 C4 doub Y N 201
DG C6 O6 doub N N 202
DG C6 N1 sing N N 203
DG N1 C2 sing N N 204
DG N1 H1 sing N N 205
DG C2 N2 sing N N 206
DG C2 N3 doub N N 207
DG N2 H21 sing N N 208
DG N2 H22 sing N N 209
DG N3 C4 sing N N 210
DT OP3 P sing N N 211
DT OP3 HOP3 sing N N 212
DT P OP1 doub N N 213
DT P OP2 sing N N 214
DT P "O5'" sing N N 215
DT OP2 HOP2 sing N N 216
DT "O5'" "C5'" sing N N 217
DT "C5'" "C4'" sing N N 218
DT "C5'" "H5'" sing N N 219
DT "C5'" "H5''" sing N N 220
DT "C4'" "O4'" sing N N 221
DT "C4'" "C3'" sing N N 222
DT "C4'" "H4'" sing N N 223
DT "O4'" "C1'" sing N N 224
DT "C3'" "O3'" sing N N 225
DT "C3'" "C2'" sing N N 226
DT "C3'" "H3'" sing N N 227
DT "O3'" "HO3'" sing N N 228
DT "C2'" "C1'" sing N N 229
DT "C2'" "H2'" sing N N 230
DT "C2'" "H2''" sing N N 231
DT "C1'" N1 sing N N 232
DT "C1'" "H1'" sing N N 233
DT N1 C2 sing N N 234
DT N1 C6 sing N N 235
DT C2 O2 doub N N 236
DT C2 N3 sing N N 237
DT N3 C4 sing N N 238
DT N3 H3 sing N N 239
DT C4 O4 doub N N 240
DT C4 C5 sing N N 241
DT C5 C7 sing N N 242
DT C5 C6 doub N N 243
DT C7 H71 sing N N 244
DT C7 H72 sing N N 245
DT C7 H73 sing N N 246
DT C6 H6 sing N N 247
MDA C1 C2 sing N N 248
MDA C1 O1 sing N N 249
MDA C1 O5 sing N N 250
MDA C1 H1 sing N N 251
MDA C2 C3 sing N N 252
MDA C2 H2 sing N N 253
MDA C2 H22 sing N N 254
MDA C3 C4 sing N N 255
MDA C3 "C3'" sing N N 256
MDA C3 O3 sing N N 257
MDA C4 C5 sing N N 258
MDA C4 O4 sing N N 259
MDA C4 H4 sing N N 260
MDA C5 C6 sing N N 261
MDA C5 O5 sing N N 262
MDA C5 H5 sing N N 263
MDA C6 H61 sing N N 264
MDA C6 H62 sing N N 265
MDA C6 H63 sing N N 266
MDA "C3'" "H3'1" sing N N 267
MDA "C3'" "H3'2" sing N N 268
MDA "C3'" "H3'3" sing N N 269
MDA O1 HO1 sing N N 270
MDA O3 HO3 sing N N 271
MDA O4 HO4 sing N N 272
#
_ndb_struct_conf_na.entry_id 146D
_ndb_struct_conf_na.feature 'double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DT 1 1_555 B DA 6 1_555 -0.393 0.099 0.275 -43.852 -5.404 3.385 1 A_DT1:DA12_B A 1 ? B 12 ? 20 1
1 A DC 2 1_555 B DG 5 1_555 0.694 -0.188 0.558 -28.009 0.013 -2.266 2 A_DC2:DG11_B A 2 ? B 11 ? 19 1
1 A DG 3 1_555 B DC 4 1_555 -0.423 -0.192 0.385 8.110 -4.309 -2.903 3 A_DG3:DC10_B A 3 ? B 10 ? 19 1
1 A DC 4 1_555 B DG 3 1_555 0.452 -0.197 0.382 -8.246 -4.238 -2.901 4 A_DC4:DG9_B A 4 ? B 9 ? 19 1
1 A DG 5 1_555 B DC 2 1_555 -0.658 -0.207 0.555 27.809 0.106 -2.288 5 A_DG5:DC8_B A 5 ? B 8 ? 19 1
1 A DA 6 1_555 B DT 1 1_555 0.417 0.078 0.273 43.833 -5.265 3.443 6 A_DA6:DT7_B A 6 ? B 7 ? 20 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DT 1 1_555 B DA 6 1_555 A DC 2 1_555 B DG 5 1_555 -0.722 -0.596 3.106 1.495 -4.166 30.598 -0.346 1.631 3.120 -7.843 -2.815
30.909 1 AA_DT1DC2:DG11DA12_BB A 1 ? B 12 ? A 2 ? B 11 ?
1 A DC 2 1_555 B DG 5 1_555 A DG 3 1_555 B DC 4 1_555 0.159 -0.631 2.224 4.743 7.197 24.927 -2.653 0.488 1.964 16.073
-10.592 26.352 2 AA_DC2DG3:DC10DG11_BB A 2 ? B 11 ? A 3 ? B 10 ?
1 A DG 3 1_555 B DC 4 1_555 A DC 4 1_555 B DG 3 1_555 -0.001 -0.968 3.953 0.008 -10.528 40.717 0.012 0.002 4.069 -14.834 -0.011
42.000 3 AA_DG3DC4:DG9DC10_BB A 3 ? B 10 ? A 4 ? B 9 ?
1 A DC 4 1_555 B DG 3 1_555 A DG 5 1_555 B DC 2 1_555 -0.160 -0.628 2.228 -4.708 7.204 24.961 -2.646 -0.478 1.970 16.070 10.502
26.381 4 AA_DC4DG5:DC8DG9_BB A 4 ? B 9 ? A 5 ? B 8 ?
1 A DG 5 1_555 B DC 2 1_555 A DA 6 1_555 B DT 1 1_555 0.722 -0.597 3.102 -1.534 -4.114 30.548 -0.357 -1.641 3.115 -7.757 2.892
30.854 5 AA_DG5DA6:DT7DC8_BB A 5 ? B 8 ? A 6 ? B 7 ?
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 DDA 1 n
2 DDA 2 n
3 DDA 1 n
3 DDL 2 n
3 MDA 3 n
#
_atom_sites.entry_id 146D
_atom_sites.fract_transf_matrix[1][1] 1.000000
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 1.000000
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 1.000000
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
H
MG
N
O
P
#
loop_