data_154D # _entry.id 154D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 154D pdb_0000154d 10.2210/pdb154d/pdb RCSB DDDB46 ? ? WWPDB D_1000170124 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-08-31 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 154D _pdbx_database_status.recvd_initial_deposition_date 1993-12-14 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Peek, M.E.' 1 'Lipscomb, L.A.' 2 'Bertrand, J.A.' 3 'Gao, Q.' 4 'Roques, B.P.' 5 'Garbay-Jaureguiberry, C.' 6 'Williams, L.D.' 7 # _citation.id primary _citation.title 'DNA distortion in bis-intercalated complexes.' _citation.journal_abbrev Biochemistry _citation.journal_volume 33 _citation.page_first 3794 _citation.page_last 3800 _citation.year 1994 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8142381 _citation.pdbx_database_id_DOI 10.1021/bi00179a002 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Peek, M.E.' 1 ? primary 'Lipscomb, L.A.' 2 ? primary 'Bertrand, J.A.' 3 ? primary 'Gao, Q.' 4 ? primary 'Roques, B.P.' 5 ? primary 'Garbay-Jaureguiberry, C.' 6 ? primary 'Williams, L.D.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*(CBR)P*GP*CP*G)-3') ; 1270.714 2 ? ? ? ? 2 non-polymer syn 'BIS-(N-ETHYLPYRIDINIUM-(3-METHOXYCARBAZOLE))HEXANE-1,6-DIAMINE' 668.870 1 ? ? ? ? 3 water nat water 18.015 27 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(CBR)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BIS-(N-ETHYLPYRIDINIUM-(3-METHOXYCARBAZOLE))HEXANE-1,6-DIAMINE' FLD 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CBR n 1 2 DG n 1 3 DC n 1 4 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 FLD non-polymer . 'BIS-(N-ETHYLPYRIDINIUM-(3-METHOXYCARBAZOLE))HEXANE-1,6-DIAMINE' FLEXI-DI 'C42 H48 N6 O2 4' 668.870 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CBR 1 1 1 CBR C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n B 1 1 CBR 1 5 5 CBR C B . n B 1 2 DG 2 6 6 DG G B . n B 1 3 DC 3 7 7 DC C B . n B 1 4 DG 4 8 8 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FLD 1 9 9 FLD FLD B . D 3 HOH 1 12 12 HOH HOH A . D 3 HOH 2 17 17 HOH HOH A . D 3 HOH 3 18 18 HOH HOH A . D 3 HOH 4 20 20 HOH HOH A . D 3 HOH 5 24 24 HOH HOH A . D 3 HOH 6 26 26 HOH HOH A . D 3 HOH 7 27 27 HOH HOH A . D 3 HOH 8 28 28 HOH HOH A . D 3 HOH 9 32 32 HOH HOH A . D 3 HOH 10 34 34 HOH HOH A . E 3 HOH 1 10 10 HOH HOH B . E 3 HOH 2 11 11 HOH HOH B . E 3 HOH 3 13 13 HOH HOH B . E 3 HOH 4 14 14 HOH HOH B . E 3 HOH 5 15 15 HOH HOH B . E 3 HOH 6 16 16 HOH HOH B . E 3 HOH 7 19 19 HOH HOH B . E 3 HOH 8 21 21 HOH HOH B . E 3 HOH 9 22 22 HOH HOH B . E 3 HOH 10 23 23 HOH HOH B . E 3 HOH 11 25 25 HOH HOH B . E 3 HOH 12 29 29 HOH HOH B . E 3 HOH 13 30 30 HOH HOH B . E 3 HOH 14 31 31 HOH HOH B . E 3 HOH 15 33 33 HOH HOH B . E 3 HOH 16 35 35 HOH HOH B . E 3 HOH 17 36 36 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PROLSQ refinement '(MODIFIED BY G.J.QUIGLEY)' ? 1 MODIFIED refinement 'BY G.J.QUIGLEY' ? 2 # _cell.entry_id 154D _cell.length_a 27.090 _cell.length_b 27.090 _cell.length_c 81.890 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 154D _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 154D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_percent_sol 58.39 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 293.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SDMS _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 154D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low ? _reflns.d_resolution_high 2.500 _reflns.number_obs 1183 _reflns.number_all 2139 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 154D _refine.ls_number_reflns_obs 1183 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.100 _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs 99.700 _refine.ls_R_factor_obs 0.239 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 158 _refine_hist.pdbx_number_atoms_ligand 52 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 237 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 7.100 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ? p_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 154D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 154D _struct.title 'DNA DISTORTION IN BIS-INTERCALATED COMPLEXES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 154D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 154D _struct_ref.pdbx_db_accession 154D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 154D A 1 ? 4 ? 154D 1 ? 4 ? 1 4 2 1 154D B 1 ? 4 ? 154D 5 ? 8 ? 5 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A CBR 1 "O3'" ? ? ? 1_555 A DG 2 P ? ? A CBR 1 A DG 2 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale2 covale both ? B CBR 1 "O3'" ? ? ? 1_555 B DG 2 P ? ? B CBR 5 B DG 6 1_555 ? ? ? ? ? ? ? 1.597 ? ? hydrog1 hydrog ? ? A CBR 1 N3 ? ? ? 1_555 B DG 4 N1 ? ? A CBR 1 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A CBR 1 N4 ? ? ? 1_555 B DG 4 O6 ? ? A CBR 1 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A CBR 1 O2 ? ? ? 1_555 B DG 4 N2 ? ? A CBR 1 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 2 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 2 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 2 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 3 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 3 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 3 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B CBR 1 N3 ? ? A DG 4 B CBR 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B CBR 1 O2 ? ? A DG 4 B CBR 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B CBR 1 N4 ? ? A DG 4 B CBR 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B FLD 9 ? 11 'BINDING SITE FOR RESIDUE FLD B 9' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 CBR A 1 ? CBR A 1 . ? 1_555 ? 2 AC1 11 DG A 2 ? DG A 2 . ? 1_555 ? 3 AC1 11 DC A 3 ? DC A 3 . ? 1_555 ? 4 AC1 11 DG A 4 ? DG A 4 . ? 1_555 ? 5 AC1 11 CBR B 1 ? CBR B 5 . ? 1_555 ? 6 AC1 11 DG B 2 ? DG B 6 . ? 1_555 ? 7 AC1 11 DC B 3 ? DC B 7 . ? 6_455 ? 8 AC1 11 DC B 3 ? DC B 7 . ? 1_555 ? 9 AC1 11 DG B 4 ? DG B 8 . ? 1_555 ? 10 AC1 11 HOH E . ? HOH B 11 . ? 1_555 ? 11 AC1 11 HOH E . ? HOH B 33 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.675 1.593 0.082 0.010 N 2 1 "O3'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.365 1.419 -0.054 0.006 N 3 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.327 1.391 -0.064 0.007 N 4 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.347 1.305 0.042 0.006 N 5 1 C8 A DG 2 ? ? N9 A DG 2 ? ? 1.327 1.374 -0.047 0.007 N 6 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.228 1.341 -0.113 0.010 N 7 1 P A DC 3 ? ? "O5'" A DC 3 ? ? 1.670 1.593 0.077 0.010 N 8 1 "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? 1.543 1.440 0.103 0.016 N 9 1 "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 1.607 1.529 0.078 0.010 N 10 1 "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.590 1.519 0.071 0.010 N 11 1 "O3'" A DC 3 ? ? "C3'" A DC 3 ? ? 1.365 1.419 -0.054 0.006 N 12 1 N3 A DC 3 ? ? C4 A DC 3 ? ? 1.384 1.335 0.049 0.007 N 13 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.610 1.529 0.081 0.010 N 14 1 "C2'" A DG 4 ? ? "C1'" A DG 4 ? ? 1.589 1.519 0.070 0.010 N 15 1 "O3'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.376 1.419 -0.043 0.006 N 16 1 C6 A DG 4 ? ? N1 A DG 4 ? ? 1.334 1.391 -0.057 0.007 N 17 1 N7 A DG 4 ? ? C8 A DG 4 ? ? 1.342 1.305 0.037 0.006 N 18 1 C2 A DG 4 ? ? N2 A DG 4 ? ? 1.247 1.341 -0.094 0.010 N 19 1 "C2'" B DG 6 ? ? "C1'" B DG 6 ? ? 1.605 1.519 0.086 0.010 N 20 1 C6 B DG 6 ? ? N1 B DG 6 ? ? 1.332 1.391 -0.059 0.007 N 21 1 C2 B DG 6 ? ? N2 B DG 6 ? ? 1.225 1.341 -0.116 0.010 N 22 1 "C4'" B DC 7 ? ? "C3'" B DC 7 ? ? 1.595 1.529 0.066 0.010 N 23 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? 1.488 1.420 0.068 0.011 N 24 1 "O3'" B DC 7 ? ? "C3'" B DC 7 ? ? 1.378 1.419 -0.041 0.006 N 25 1 "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? 1.597 1.529 0.068 0.010 N 26 1 C6 B DG 8 ? ? N1 B DG 8 ? ? 1.328 1.391 -0.063 0.007 N 27 1 N7 B DG 8 ? ? C8 B DG 8 ? ? 1.349 1.305 0.044 0.006 N 28 1 C8 B DG 8 ? ? N9 B DG 8 ? ? 1.312 1.374 -0.062 0.007 N 29 1 C2 B DG 8 ? ? N2 B DG 8 ? ? 1.244 1.341 -0.097 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 98.75 105.70 -6.95 0.90 N 2 1 P A DG 2 ? ? "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? 106.28 120.90 -14.62 1.60 N 3 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.64 108.30 4.34 0.30 N 4 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 120.18 125.10 -4.92 0.60 N 5 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 129.02 123.90 5.12 0.60 N 6 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 108.82 111.90 -3.08 0.50 N 7 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 116.30 111.50 4.80 0.50 N 8 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 121.84 116.20 5.64 0.90 N 9 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 109.13 119.90 -10.77 0.70 N 10 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 123.57 128.60 -5.03 0.60 N 11 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 133.80 119.70 14.10 1.20 Y 12 1 "O5'" A DC 3 ? ? P A DC 3 ? ? OP1 A DC 3 ? ? 97.10 105.70 -8.60 0.90 N 13 1 "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 98.40 109.40 -11.00 0.80 N 14 1 P A DC 3 ? ? "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? 99.71 120.90 -21.19 1.60 N 15 1 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 95.82 104.50 -8.68 0.40 N 16 1 "C1'" A DC 3 ? ? "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 94.38 110.10 -15.72 1.00 N 17 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? "C2'" A DC 3 ? ? 101.03 105.90 -4.87 0.80 N 18 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 124.59 119.90 4.69 0.50 N 19 1 N3 A DC 3 ? ? C4 A DC 3 ? ? C5 A DC 3 ? ? 116.94 121.90 -4.96 0.40 N 20 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.24 118.90 4.34 0.60 N 21 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DG 4 ? ? 128.27 119.70 8.57 1.20 Y 22 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 103.41 109.40 -5.99 0.80 N 23 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 98.12 104.50 -6.38 0.40 N 24 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? "O4'" A DG 4 ? ? 117.11 109.80 7.31 1.10 N 25 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 95.82 102.20 -6.38 0.70 N 26 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 113.78 108.30 5.48 0.30 N 27 1 C6 A DG 4 ? ? N1 A DG 4 ? ? C2 A DG 4 ? ? 118.03 125.10 -7.07 0.60 N 28 1 N1 A DG 4 ? ? C2 A DG 4 ? ? N3 A DG 4 ? ? 130.71 123.90 6.81 0.60 N 29 1 C2 A DG 4 ? ? N3 A DG 4 ? ? C4 A DG 4 ? ? 108.69 111.90 -3.21 0.50 N 30 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 117.29 111.50 5.79 0.50 N 31 1 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 109.06 119.90 -10.84 0.70 N 32 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 124.81 128.60 -3.79 0.60 N 33 1 P B DG 6 ? ? "O5'" B DG 6 ? ? "C5'" B DG 6 ? ? 110.61 120.90 -10.29 1.60 N 34 1 "O4'" B DG 6 ? ? "C1'" B DG 6 ? ? "C2'" B DG 6 ? ? 99.95 105.90 -5.95 0.80 N 35 1 "O4'" B DG 6 ? ? "C1'" B DG 6 ? ? N9 B DG 6 ? ? 112.65 108.30 4.35 0.30 N 36 1 C6 B DG 6 ? ? N1 B DG 6 ? ? C2 B DG 6 ? ? 118.49 125.10 -6.61 0.60 N 37 1 N1 B DG 6 ? ? C2 B DG 6 ? ? N3 B DG 6 ? ? 130.06 123.90 6.16 0.60 N 38 1 C5 B DG 6 ? ? C6 B DG 6 ? ? N1 B DG 6 ? ? 117.34 111.50 5.84 0.50 N 39 1 N3 B DG 6 ? ? C2 B DG 6 ? ? N2 B DG 6 ? ? 109.38 119.90 -10.52 0.70 N 40 1 C5 B DG 6 ? ? C6 B DG 6 ? ? O6 B DG 6 ? ? 123.06 128.60 -5.54 0.60 N 41 1 "C3'" B DG 6 ? ? "O3'" B DG 6 ? ? P B DC 7 ? ? 129.20 119.70 9.50 1.20 Y 42 1 "O5'" B DC 7 ? ? P B DC 7 ? ? OP1 B DC 7 ? ? 98.18 105.70 -7.52 0.90 N 43 1 P B DC 7 ? ? "O5'" B DC 7 ? ? "C5'" B DC 7 ? ? 107.47 120.90 -13.43 1.60 N 44 1 "O4'" B DC 7 ? ? "C4'" B DC 7 ? ? "C3'" B DC 7 ? ? 96.67 104.50 -7.83 0.40 N 45 1 "C1'" B DC 7 ? ? "O4'" B DC 7 ? ? "C4'" B DC 7 ? ? 101.34 110.10 -8.76 1.00 N 46 1 C2 B DC 7 ? ? N3 B DC 7 ? ? C4 B DC 7 ? ? 125.81 119.90 5.91 0.50 N 47 1 N3 B DC 7 ? ? C4 B DC 7 ? ? C5 B DC 7 ? ? 116.41 121.90 -5.49 0.40 N 48 1 N1 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 124.34 118.90 5.44 0.60 N 49 1 "C3'" B DC 7 ? ? "O3'" B DC 7 ? ? P B DG 8 ? ? 131.14 119.70 11.44 1.20 Y 50 1 "O5'" B DG 8 ? ? P B DG 8 ? ? OP1 B DG 8 ? ? 100.30 105.70 -5.40 0.90 N 51 1 "O4'" B DG 8 ? ? "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? 100.86 104.50 -3.64 0.40 N 52 1 "C5'" B DG 8 ? ? "C4'" B DG 8 ? ? "O4'" B DG 8 ? ? 120.26 109.80 10.46 1.10 N 53 1 C6 B DG 8 ? ? N1 B DG 8 ? ? C2 B DG 8 ? ? 119.01 125.10 -6.09 0.60 N 54 1 N1 B DG 8 ? ? C2 B DG 8 ? ? N3 B DG 8 ? ? 129.28 123.90 5.38 0.60 N 55 1 C5 B DG 8 ? ? C6 B DG 8 ? ? N1 B DG 8 ? ? 118.11 111.50 6.61 0.50 N 56 1 N3 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 110.47 119.90 -9.43 0.70 N 57 1 C5 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 124.96 128.60 -3.64 0.60 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CBR 1 A CBR 1 ? DC ? 2 B CBR 1 B CBR 5 ? DC ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text BIS-INTERCALATION # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CBR BR BR N N 1 CBR P P N N 2 CBR OP1 O N N 3 CBR OP2 O N N 4 CBR "O5'" O N N 5 CBR N1 N N N 6 CBR C6 C N N 7 CBR C2 C N N 8 CBR O2 O N N 9 CBR N3 N N N 10 CBR C4 C N N 11 CBR N4 N N N 12 CBR C5 C N N 13 CBR "C2'" C N N 14 CBR "C5'" C N N 15 CBR "C4'" C N R 16 CBR "O4'" O N N 17 CBR "C1'" C N R 18 CBR "C3'" C N S 19 CBR "O3'" O N N 20 CBR OP3 O N N 21 CBR HOP2 H N N 22 CBR H6 H N N 23 CBR H41 H N N 24 CBR H42 H N N 25 CBR "H2'" H N N 26 CBR "H2''" H N N 27 CBR "H5'" H N N 28 CBR "H5''" H N N 29 CBR "H4'" H N N 30 CBR "H1'" H N N 31 CBR "H3'" H N N 32 CBR "HO3'" H N N 33 CBR HOP3 H N N 34 DC OP3 O N N 35 DC P P N N 36 DC OP1 O N N 37 DC OP2 O N N 38 DC "O5'" O N N 39 DC "C5'" C N N 40 DC "C4'" C N R 41 DC "O4'" O N N 42 DC "C3'" C N S 43 DC "O3'" O N N 44 DC "C2'" C N N 45 DC "C1'" C N R 46 DC N1 N N N 47 DC C2 C N N 48 DC O2 O N N 49 DC N3 N N N 50 DC C4 C N N 51 DC N4 N N N 52 DC C5 C N N 53 DC C6 C N N 54 DC HOP3 H N N 55 DC HOP2 H N N 56 DC "H5'" H N N 57 DC "H5''" H N N 58 DC "H4'" H N N 59 DC "H3'" H N N 60 DC "HO3'" H N N 61 DC "H2'" H N N 62 DC "H2''" H N N 63 DC "H1'" H N N 64 DC H41 H N N 65 DC H42 H N N 66 DC H5 H N N 67 DC H6 H N N 68 DG OP3 O N N 69 DG P P N N 70 DG OP1 O N N 71 DG OP2 O N N 72 DG "O5'" O N N 73 DG "C5'" C N N 74 DG "C4'" C N R 75 DG "O4'" O N N 76 DG "C3'" C N S 77 DG "O3'" O N N 78 DG "C2'" C N N 79 DG "C1'" C N R 80 DG N9 N Y N 81 DG C8 C Y N 82 DG N7 N Y N 83 DG C5 C Y N 84 DG C6 C N N 85 DG O6 O N N 86 DG N1 N N N 87 DG C2 C N N 88 DG N2 N N N 89 DG N3 N N N 90 DG C4 C Y N 91 DG HOP3 H N N 92 DG HOP2 H N N 93 DG "H5'" H N N 94 DG "H5''" H N N 95 DG "H4'" H N N 96 DG "H3'" H N N 97 DG "HO3'" H N N 98 DG "H2'" H N N 99 DG "H2''" H N N 100 DG "H1'" H N N 101 DG H8 H N N 102 DG H1 H N N 103 DG H21 H N N 104 DG H22 H N N 105 FLD C1 C Y N 106 FLD N2 N Y N 107 FLD C3 C Y N 108 FLD C4 C Y N 109 FLD C5 C Y N 110 FLD C6 C Y N 111 FLD N7 N Y N 112 FLD C8 C Y N 113 FLD C9 C Y N 114 FLD C10 C Y N 115 FLD O10 O N N 116 FLD C11 C Y N 117 FLD C12 C Y N 118 FLD C13 C Y N 119 FLD C14 C Y N 120 FLD C15 C Y N 121 FLD C16 C Y N 122 FLD C17 C Y N 123 FLD C18 C N N 124 FLD C19 C N N 125 FLD C20 C N N 126 FLD N21 N N N 127 FLD C22 C N N 128 FLD C23 C N N 129 FLD C24 C N N 130 FLD C1X C Y N 131 FLD N2X N Y N 132 FLD C3X C Y N 133 FLD C4X C Y N 134 FLD C5X C Y N 135 FLD C6X C Y N 136 FLD N7X N Y N 137 FLD C8X C Y N 138 FLD C9X C Y N 139 FLD CAX C Y N 140 FLD OAX O N N 141 FLD CBX C Y N 142 FLD CCX C Y N 143 FLD CDX C Y N 144 FLD CEX C Y N 145 FLD CFX C Y N 146 FLD CGX C Y N 147 FLD CHX C Y N 148 FLD CIX C N N 149 FLD CJX C N N 150 FLD CKX C N N 151 FLD NLX N N N 152 FLD CMX C N N 153 FLD CNX C N N 154 FLD COX C N N 155 FLD H1 H N N 156 FLD H3 H N N 157 FLD H4 H N N 158 FLD H5 H N N 159 FLD H6 H N N 160 FLD HN7 H N N 161 FLD H8 H N N 162 FLD H9 H N N 163 FLD H11 H N N 164 FLD H181 H N N 165 FLD H182 H N N 166 FLD H183 H N N 167 FLD H191 H N N 168 FLD H192 H N N 169 FLD H201 H N N 170 FLD H202 H N N 171 FLD HN21 H N N 172 FLD HN22 H N N 173 FLD H221 H N N 174 FLD H222 H N N 175 FLD H231 H N N 176 FLD H232 H N N 177 FLD H241 H N N 178 FLD H242 H N N 179 FLD H1X H N N 180 FLD H3X H N N 181 FLD H4X H N N 182 FLD H5X H N N 183 FLD H6X H N N 184 FLD HN7X H N N 185 FLD H8X H N N 186 FLD H9X H N N 187 FLD H11X H N N 188 FLD HX81 H N N 189 FLD HX82 H N N 190 FLD HX83 H N N 191 FLD HX91 H N N 192 FLD HX92 H N N 193 FLD HX01 H N N 194 FLD HX02 H N N 195 FLD HN1X H N N 196 FLD HN2X H N N 197 FLD HX21 H N N 198 FLD HX22 H N N 199 FLD HX31 H N N 200 FLD HX32 H N N 201 FLD HX41 H N N 202 FLD HX42 H N N 203 HOH O O N N 204 HOH H1 H N N 205 HOH H2 H N N 206 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CBR BR C5 sing N N 1 CBR P OP1 doub N N 2 CBR P OP2 sing N N 3 CBR P "O5'" sing N N 4 CBR P OP3 sing N N 5 CBR OP2 HOP2 sing N N 6 CBR "O5'" "C5'" sing N N 7 CBR N1 C6 sing N N 8 CBR N1 C2 sing N N 9 CBR N1 "C1'" sing N N 10 CBR C6 C5 doub N N 11 CBR C6 H6 sing N N 12 CBR C2 O2 doub N N 13 CBR C2 N3 sing N N 14 CBR N3 C4 doub N N 15 CBR C4 N4 sing N N 16 CBR C4 C5 sing N N 17 CBR N4 H41 sing N N 18 CBR N4 H42 sing N N 19 CBR "C2'" "C1'" sing N N 20 CBR "C2'" "C3'" sing N N 21 CBR "C2'" "H2'" sing N N 22 CBR "C2'" "H2''" sing N N 23 CBR "C5'" "C4'" sing N N 24 CBR "C5'" "H5'" sing N N 25 CBR "C5'" "H5''" sing N N 26 CBR "C4'" "O4'" sing N N 27 CBR "C4'" "C3'" sing N N 28 CBR "C4'" "H4'" sing N N 29 CBR "O4'" "C1'" sing N N 30 CBR "C1'" "H1'" sing N N 31 CBR "C3'" "O3'" sing N N 32 CBR "C3'" "H3'" sing N N 33 CBR "O3'" "HO3'" sing N N 34 CBR OP3 HOP3 sing N N 35 DC OP3 P sing N N 36 DC OP3 HOP3 sing N N 37 DC P OP1 doub N N 38 DC P OP2 sing N N 39 DC P "O5'" sing N N 40 DC OP2 HOP2 sing N N 41 DC "O5'" "C5'" sing N N 42 DC "C5'" "C4'" sing N N 43 DC "C5'" "H5'" sing N N 44 DC "C5'" "H5''" sing N N 45 DC "C4'" "O4'" sing N N 46 DC "C4'" "C3'" sing N N 47 DC "C4'" "H4'" sing N N 48 DC "O4'" "C1'" sing N N 49 DC "C3'" "O3'" sing N N 50 DC "C3'" "C2'" sing N N 51 DC "C3'" "H3'" sing N N 52 DC "O3'" "HO3'" sing N N 53 DC "C2'" "C1'" sing N N 54 DC "C2'" "H2'" sing N N 55 DC "C2'" "H2''" sing N N 56 DC "C1'" N1 sing N N 57 DC "C1'" "H1'" sing N N 58 DC N1 C2 sing N N 59 DC N1 C6 sing N N 60 DC C2 O2 doub N N 61 DC C2 N3 sing N N 62 DC N3 C4 doub N N 63 DC C4 N4 sing N N 64 DC C4 C5 sing N N 65 DC N4 H41 sing N N 66 DC N4 H42 sing N N 67 DC C5 C6 doub N N 68 DC C5 H5 sing N N 69 DC C6 H6 sing N N 70 DG OP3 P sing N N 71 DG OP3 HOP3 sing N N 72 DG P OP1 doub N N 73 DG P OP2 sing N N 74 DG P "O5'" sing N N 75 DG OP2 HOP2 sing N N 76 DG "O5'" "C5'" sing N N 77 DG "C5'" "C4'" sing N N 78 DG "C5'" "H5'" sing N N 79 DG "C5'" "H5''" sing N N 80 DG "C4'" "O4'" sing N N 81 DG "C4'" "C3'" sing N N 82 DG "C4'" "H4'" sing N N 83 DG "O4'" "C1'" sing N N 84 DG "C3'" "O3'" sing N N 85 DG "C3'" "C2'" sing N N 86 DG "C3'" "H3'" sing N N 87 DG "O3'" "HO3'" sing N N 88 DG "C2'" "C1'" sing N N 89 DG "C2'" "H2'" sing N N 90 DG "C2'" "H2''" sing N N 91 DG "C1'" N9 sing N N 92 DG "C1'" "H1'" sing N N 93 DG N9 C8 sing Y N 94 DG N9 C4 sing Y N 95 DG C8 N7 doub Y N 96 DG C8 H8 sing N N 97 DG N7 C5 sing Y N 98 DG C5 C6 sing N N 99 DG C5 C4 doub Y N 100 DG C6 O6 doub N N 101 DG C6 N1 sing N N 102 DG N1 C2 sing N N 103 DG N1 H1 sing N N 104 DG C2 N2 sing N N 105 DG C2 N3 doub N N 106 DG N2 H21 sing N N 107 DG N2 H22 sing N N 108 DG N3 C4 sing N N 109 FLD C1 N2 doub Y N 110 FLD C1 C17 sing Y N 111 FLD C1 H1 sing N N 112 FLD N2 C3 sing Y N 113 FLD N2 C19 sing N N 114 FLD C3 C4 doub Y N 115 FLD C3 H3 sing N N 116 FLD C4 C12 sing Y N 117 FLD C4 H4 sing N N 118 FLD C5 C6 doub Y N 119 FLD C5 C12 sing Y N 120 FLD C5 H5 sing N N 121 FLD C6 C13 sing Y N 122 FLD C6 H6 sing N N 123 FLD N7 C13 sing Y N 124 FLD N7 C14 sing Y N 125 FLD N7 HN7 sing N N 126 FLD C8 C9 sing Y N 127 FLD C8 C14 doub Y N 128 FLD C8 H8 sing N N 129 FLD C9 C10 doub Y N 130 FLD C9 H9 sing N N 131 FLD C10 O10 sing N N 132 FLD C10 C11 sing Y N 133 FLD O10 C18 sing N N 134 FLD C11 C15 doub Y N 135 FLD C11 H11 sing N N 136 FLD C12 C17 doub Y N 137 FLD C13 C16 doub Y N 138 FLD C14 C15 sing Y N 139 FLD C15 C16 sing Y N 140 FLD C16 C17 sing Y N 141 FLD C18 H181 sing N N 142 FLD C18 H182 sing N N 143 FLD C18 H183 sing N N 144 FLD C19 C20 sing N N 145 FLD C19 H191 sing N N 146 FLD C19 H192 sing N N 147 FLD C20 N21 sing N N 148 FLD C20 H201 sing N N 149 FLD C20 H202 sing N N 150 FLD N21 C22 sing N N 151 FLD N21 HN21 sing N N 152 FLD N21 HN22 sing N N 153 FLD C22 C23 sing N N 154 FLD C22 H221 sing N N 155 FLD C22 H222 sing N N 156 FLD C23 C24 sing N N 157 FLD C23 H231 sing N N 158 FLD C23 H232 sing N N 159 FLD C24 COX sing N N 160 FLD C24 H241 sing N N 161 FLD C24 H242 sing N N 162 FLD C1X N2X doub Y N 163 FLD C1X CHX sing Y N 164 FLD C1X H1X sing N N 165 FLD N2X C3X sing Y N 166 FLD N2X CJX sing N N 167 FLD C3X C4X doub Y N 168 FLD C3X H3X sing N N 169 FLD C4X CCX sing Y N 170 FLD C4X H4X sing N N 171 FLD C5X C6X doub Y N 172 FLD C5X CCX sing Y N 173 FLD C5X H5X sing N N 174 FLD C6X CDX sing Y N 175 FLD C6X H6X sing N N 176 FLD N7X CDX sing Y N 177 FLD N7X CEX sing Y N 178 FLD N7X HN7X sing N N 179 FLD C8X C9X sing Y N 180 FLD C8X CEX doub Y N 181 FLD C8X H8X sing N N 182 FLD C9X CAX doub Y N 183 FLD C9X H9X sing N N 184 FLD CAX OAX sing N N 185 FLD CAX CBX sing Y N 186 FLD OAX CIX sing N N 187 FLD CBX CFX doub Y N 188 FLD CBX H11X sing N N 189 FLD CCX CHX doub Y N 190 FLD CDX CGX doub Y N 191 FLD CEX CFX sing Y N 192 FLD CFX CGX sing Y N 193 FLD CGX CHX sing Y N 194 FLD CIX HX81 sing N N 195 FLD CIX HX82 sing N N 196 FLD CIX HX83 sing N N 197 FLD CJX CKX sing N N 198 FLD CJX HX91 sing N N 199 FLD CJX HX92 sing N N 200 FLD CKX NLX sing N N 201 FLD CKX HX01 sing N N 202 FLD CKX HX02 sing N N 203 FLD NLX CMX sing N N 204 FLD NLX HN1X sing N N 205 FLD NLX HN2X sing N N 206 FLD CMX CNX sing N N 207 FLD CMX HX21 sing N N 208 FLD CMX HX22 sing N N 209 FLD CNX COX sing N N 210 FLD CNX HX31 sing N N 211 FLD CNX HX32 sing N N 212 FLD COX HX41 sing N N 213 FLD COX HX42 sing N N 214 HOH O H1 sing N N 215 HOH O H2 sing N N 216 # _ndb_struct_conf_na.entry_id 154D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A CBR 1 1_555 B DG 4 1_555 0.357 -0.348 0.177 2.524 -4.268 1.747 1 A_CBR1:DG8_B A 1 ? B 8 ? 19 1 1 A DG 2 1_555 B DC 3 1_555 -0.465 -0.433 -0.277 -7.802 3.583 -2.794 2 A_DG2:DC7_B A 2 ? B 7 ? 19 1 1 A DC 3 1_555 B DG 2 1_555 -0.242 -0.305 -0.139 3.921 7.024 -0.516 3 A_DC3:DG6_B A 3 ? B 6 ? 19 1 1 A DG 4 1_555 B CBR 1 1_555 -0.132 -0.212 0.106 -4.085 -6.668 4.106 4 A_DG4:CBR5_B A 4 ? B 5 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A CBR 1 1_555 B DG 4 1_555 A DG 2 1_555 B DC 3 1_555 0.953 -0.131 6.996 6.392 1.076 17.303 -1.697 4.695 6.877 3.424 -20.343 18.469 1 AA_CBR1DG2:DC7DG8_BB A 1 ? B 8 ? A 2 ? B 7 ? 1 A DG 2 1_555 B DC 3 1_555 A DC 3 1_555 B DG 2 1_555 0.521 0.014 3.368 -1.695 -8.598 25.360 2.309 -1.574 3.152 -18.881 3.723 26.808 2 AA_DG2DC3:DG6DC7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A DC 3 1_555 B DG 2 1_555 A DG 4 1_555 B CBR 1 1_555 -0.985 -0.380 6.919 -3.829 -0.247 24.306 -0.730 -0.206 6.992 -0.583 9.021 24.603 3 AA_DC3DG4:CBR5DG6_BB A 3 ? B 6 ? A 4 ? B 5 ? # _atom_sites.entry_id 154D _atom_sites.fract_transf_matrix[1][1] 0.036914 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.036914 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012212 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_