HEADER DNA 14-DEC-93 154D TITLE DNA DISTORTION IN BIS-INTERCALATED COMPLEXES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*(CBR)P*GP*CP*G)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA EXPDTA X-RAY DIFFRACTION AUTHOR M.E.PEEK,L.A.LIPSCOMB,J.A.BERTRAND,Q.GAO,B.P.ROQUES,C.GARBAY- AUTHOR 2 JAUREGUIBERRY,L.D.WILLIAMS REVDAT 3 07-FEB-24 154D 1 REMARK LINK REVDAT 2 24-FEB-09 154D 1 VERSN REVDAT 1 31-AUG-94 154D 0 JRNL AUTH M.E.PEEK,L.A.LIPSCOMB,J.A.BERTRAND,Q.GAO,B.P.ROQUES, JRNL AUTH 2 C.GARBAY-JAUREGUIBERRY,L.D.WILLIAMS JRNL TITL DNA DISTORTION IN BIS-INTERCALATED COMPLEXES. JRNL REF BIOCHEMISTRY V. 33 3794 1994 JRNL REFN ISSN 0006-2960 JRNL PMID 8142381 JRNL DOI 10.1021/BI00179A002 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ (MODIFIED BY G.J.QUIGLEY) REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 1183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 160 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.021 ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 154D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000170124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 293.00 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SDMS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1183 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.00, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.94500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 13.54500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 13.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.47250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 13.54500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 13.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.41750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 13.54500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 13.54500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.47250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 13.54500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 13.54500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.41750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.94500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 2 P DG A 2 O5' 0.082 REMARK 500 DG A 2 O3' DG A 2 C3' -0.054 REMARK 500 DG A 2 C6 DG A 2 N1 -0.064 REMARK 500 DG A 2 N7 DG A 2 C8 0.042 REMARK 500 DG A 2 C8 DG A 2 N9 -0.047 REMARK 500 DG A 2 C2 DG A 2 N2 -0.113 REMARK 500 DC A 3 P DC A 3 O5' 0.077 REMARK 500 DC A 3 O5' DC A 3 C5' 0.103 REMARK 500 DC A 3 C4' DC A 3 C3' 0.078 REMARK 500 DC A 3 C2' DC A 3 C1' 0.071 REMARK 500 DC A 3 O3' DC A 3 C3' -0.054 REMARK 500 DC A 3 N3 DC A 3 C4 0.049 REMARK 500 DG A 4 C4' DG A 4 C3' 0.081 REMARK 500 DG A 4 C2' DG A 4 C1' 0.070 REMARK 500 DG A 4 O3' DG A 4 C3' -0.043 REMARK 500 DG A 4 C6 DG A 4 N1 -0.057 REMARK 500 DG A 4 N7 DG A 4 C8 0.037 REMARK 500 DG A 4 C2 DG A 4 N2 -0.094 REMARK 500 DG B 6 C2' DG B 6 C1' 0.086 REMARK 500 DG B 6 C6 DG B 6 N1 -0.059 REMARK 500 DG B 6 C2 DG B 6 N2 -0.116 REMARK 500 DC B 7 C4' DC B 7 C3' 0.066 REMARK 500 DC B 7 O4' DC B 7 C1' 0.068 REMARK 500 DC B 7 O3' DC B 7 C3' -0.041 REMARK 500 DG B 8 C4' DG B 8 C3' 0.068 REMARK 500 DG B 8 C6 DG B 8 N1 -0.063 REMARK 500 DG B 8 N7 DG B 8 C8 0.044 REMARK 500 DG B 8 C8 DG B 8 N9 -0.062 REMARK 500 DG B 8 C2 DG B 8 N2 -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 2 O5' - P - OP2 ANGL. DEV. = -7.0 DEGREES REMARK 500 DG A 2 P - O5' - C5' ANGL. DEV. = -14.6 DEGREES REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG A 2 C6 - N1 - C2 ANGL. DEV. = -4.9 DEGREES REMARK 500 DG A 2 N1 - C2 - N3 ANGL. DEV. = 5.1 DEGREES REMARK 500 DG A 2 C2 - N3 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 DG A 2 C5 - C6 - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DG A 2 N1 - C2 - N2 ANGL. DEV. = 5.6 DEGREES REMARK 500 DG A 2 N3 - C2 - N2 ANGL. DEV. = -10.8 DEGREES REMARK 500 DG A 2 C5 - C6 - O6 ANGL. DEV. = -5.0 DEGREES REMARK 500 DG A 2 C3' - O3' - P ANGL. DEV. = 14.1 DEGREES REMARK 500 DC A 3 O5' - P - OP1 ANGL. DEV. = -8.6 DEGREES REMARK 500 DC A 3 O5' - C5' - C4' ANGL. DEV. = -11.0 DEGREES REMARK 500 DC A 3 P - O5' - C5' ANGL. DEV. = -21.2 DEGREES REMARK 500 DC A 3 O4' - C4' - C3' ANGL. DEV. = -8.7 DEGREES REMARK 500 DC A 3 C1' - O4' - C4' ANGL. DEV. = -15.7 DEGREES REMARK 500 DC A 3 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC A 3 C2 - N3 - C4 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC A 3 N3 - C4 - C5 ANGL. DEV. = -5.0 DEGREES REMARK 500 DC A 3 N1 - C2 - O2 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC A 3 C3' - O3' - P ANGL. DEV. = 8.6 DEGREES REMARK 500 DG A 4 O5' - C5' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG A 4 O4' - C4' - C3' ANGL. DEV. = -6.4 DEGREES REMARK 500 DG A 4 C5' - C4' - O4' ANGL. DEV. = 7.3 DEGREES REMARK 500 DG A 4 C4' - C3' - C2' ANGL. DEV. = -6.4 DEGREES REMARK 500 DG A 4 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 DG A 4 C6 - N1 - C2 ANGL. DEV. = -7.1 DEGREES REMARK 500 DG A 4 N1 - C2 - N3 ANGL. DEV. = 6.8 DEGREES REMARK 500 DG A 4 C2 - N3 - C4 ANGL. DEV. = -3.2 DEGREES REMARK 500 DG A 4 C5 - C6 - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 DG A 4 N3 - C2 - N2 ANGL. DEV. = -10.8 DEGREES REMARK 500 DG A 4 C5 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG B 6 P - O5' - C5' ANGL. DEV. = -10.3 DEGREES REMARK 500 DG B 6 O4' - C1' - C2' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG B 6 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG B 6 C6 - N1 - C2 ANGL. DEV. = -6.6 DEGREES REMARK 500 DG B 6 N1 - C2 - N3 ANGL. DEV. = 6.2 DEGREES REMARK 500 DG B 6 C5 - C6 - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 DG B 6 N3 - C2 - N2 ANGL. DEV. = -10.5 DEGREES REMARK 500 DG B 6 C5 - C6 - O6 ANGL. DEV. = -5.5 DEGREES REMARK 500 DG B 6 C3' - O3' - P ANGL. DEV. = 9.5 DEGREES REMARK 500 DC B 7 O5' - P - OP1 ANGL. DEV. = -7.5 DEGREES REMARK 500 DC B 7 P - O5' - C5' ANGL. DEV. = -13.4 DEGREES REMARK 500 DC B 7 O4' - C4' - C3' ANGL. DEV. = -7.8 DEGREES REMARK 500 DC B 7 C1' - O4' - C4' ANGL. DEV. = -8.8 DEGREES REMARK 500 DC B 7 C2 - N3 - C4 ANGL. DEV. = 5.9 DEGREES REMARK 500 DC B 7 N3 - C4 - C5 ANGL. DEV. = -5.5 DEGREES REMARK 500 DC B 7 N1 - C2 - O2 ANGL. DEV. = 5.4 DEGREES REMARK 500 DC B 7 C3' - O3' - P ANGL. DEV. = 11.4 DEGREES REMARK 500 DG B 8 O5' - P - OP1 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 57 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLD B 9 DBREF 154D A 1 4 PDB 154D 154D 1 4 DBREF 154D B 5 8 PDB 154D 154D 5 8 SEQRES 1 A 4 CBR DG DC DG SEQRES 1 B 4 CBR DG DC DG MODRES 154D CBR A 1 DC MODRES 154D CBR B 5 DC HET CBR A 1 17 HET CBR B 5 17 HET FLD B 9 50 HETNAM CBR 5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM FLD BIS-(N-ETHYLPYRIDINIUM-(3-METHOXYCARBAZOLE))HEXANE-1,6- HETNAM 2 FLD DIAMINE HETSYN FLD FLEXI-DI FORMUL 1 CBR 2(C9 H13 BR N3 O7 P) FORMUL 3 FLD C42 H48 N6 O2 4+ FORMUL 4 HOH *27(H2 O) LINK O3' CBR A 1 P DG A 2 1555 1555 1.61 LINK O3' CBR B 5 P DG B 6 1555 1555 1.60 SITE 1 AC1 10 CBR A 1 DG A 2 DC A 3 DG A 4 SITE 2 AC1 10 CBR B 5 DG B 6 DC B 7 DG B 8 SITE 3 AC1 10 HOH B 11 HOH B 33 CRYST1 27.090 27.090 81.890 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.036914 0.000000 0.000000 0.00000 SCALE2 0.000000 0.036914 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012212 0.00000 HETATM 1 BR CBR A 1 -4.945 14.780 39.858 1.00 24.96 BR HETATM 2 O5' CBR A 1 -4.936 18.218 40.135 1.00 21.60 O HETATM 3 N1 CBR A 1 -1.657 17.158 39.890 1.00 20.53 N HETATM 4 C6 CBR A 1 -2.943 16.664 39.948 1.00 20.36 C HETATM 5 C2 CBR A 1 -0.614 16.319 39.705 1.00 20.04 C HETATM 6 O2 CBR A 1 0.530 16.730 39.663 1.00 20.08 O HETATM 7 N3 CBR A 1 -0.892 14.989 39.549 1.00 20.32 N HETATM 8 C4 CBR A 1 -2.180 14.462 39.585 1.00 20.68 C HETATM 9 N4 CBR A 1 -2.405 13.125 39.421 1.00 20.41 N HETATM 10 C5 CBR A 1 -3.237 15.396 39.799 1.00 20.90 C HETATM 11 C2' CBR A 1 -1.217 19.548 38.945 1.00 21.71 C HETATM 12 C5' CBR A 1 -4.839 19.649 40.085 1.00 21.58 C HETATM 13 C4' CBR A 1 -3.357 20.013 40.036 1.00 21.80 C HETATM 14 O4' CBR A 1 -2.598 19.071 40.761 1.00 21.61 O HETATM 15 C1' CBR A 1 -1.368 18.622 40.104 1.00 20.88 C HETATM 16 C3' CBR A 1 -2.648 20.039 38.664 1.00 22.18 C HETATM 17 O3' CBR A 1 -2.669 21.373 38.201 1.00 22.93 O